Dockerfile_jupyterlab

FROM ghcr.io/seisscoped/pysep:ubuntu20.04_jupyterlab

LABEL maintainer="Ian Wang"

RUN apt-get update --yes \
    && apt-get install -yq --no-install-recommends zlib1g-dev gfortran libmpich-dev mpich \
    && docker-clean

RUN cd /home/scoped \
    && git clone https://github.com/adjtomo/adjdocs \
    && git clone --branch devel https://github.com/adjtomo/seisflows \
    && git clone --branch devel https://github.com/adjtomo/pyatoa \
    && git clone --branch devel --depth=1 https://github.com/specfem/specfem2d \
    && git clone --branch devel --depth=1 https://github.com/specfem/specfem3d

RUN cd /home/scoped/pyatoa \
    && conda env update -f environment.yml -n base \
    && docker-clean

RUN cd /home/scoped/seisflows \
    && conda env update -f environment.yml -n base \
    && docker-clean

ADD scripts/clean_specfem2d_repo.sh /home/scoped/clean_specfem2d_repo.sh 
ADD scripts/clean_specfem3d_repo.sh /home/scoped/clean_specfem3d_repo.sh

RUN cd /home/scoped/specfem2d \
    && ./configure FC=gfortran CC=gcc CXX=mpicxx MPIFC=mpif90 --with-mpi \
    && make all \
    && bash /home/scoped/clean_specfem2d_repo.sh \
    && rm /home/scoped/clean_specfem2d_repo.sh \
    && docker-clean

RUN cd /home/scoped/specfem3d \
    && ./configure FC=gfortran CC=gcc CXX=mpicxx MPIFC=mpif90 --with-mpi \
    && make all \
    && bash /home/scoped/clean_specfem3d_repo.sh \
    && rm /home/scoped/clean_specfem3d_repo.sh \
    && docker-clean