From 52bb6cfa1cba3b21feae5082c3b5e12205e8f7f3 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Thu, 31 Aug 2023 10:59:27 +0100 Subject: [PATCH 01/29] Updated environment lockfiles (#296) Co-authored-by: stephenworsley --- requirements/locks/py310-linux-64.lock | 86 ++++++++++++------------ requirements/locks/py311-linux-64.lock | 86 ++++++++++++------------ requirements/locks/py39-linux-64.lock | 92 ++++++++++++++------------ 3 files changed, 138 insertions(+), 126 deletions(-) diff --git a/requirements/locks/py310-linux-64.lock b/requirements/locks/py310-linux-64.lock index 1f898d6d..a7a0d5d9 100644 --- a/requirements/locks/py310-linux-64.lock +++ b/requirements/locks/py310-linux-64.lock @@ -25,7 +25,7 @@ https://conda.anaconda.org/conda-forge/linux-64/aws-c-common-0.8.23-hd590300_0.c https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-h7f98852_4.tar.bz2#a1fd65c7ccbf10880423d82bca54eb54 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https://conda.anaconda.org/conda-forge/linux-64/graphviz-8.1.0-h28d9a01_0.conda#33628e0e3de7afd2c8172f76439894cb https://conda.anaconda.org/conda-forge/noarch/imagehash-4.3.1-pyhd8ed1ab_0.tar.bz2#132ad832787a2156be1f1b309835001a https://conda.anaconda.org/conda-forge/linux-64/libnetcdf-4.9.2-nompi_h7e745eb_109.conda#9e208615247477427acbd0900ca7038f @@ -293,3 +287,13 @@ https://conda.anaconda.org/conda-forge/linux-64/netcdf-fortran-4.6.1-nompi_hec59 https://conda.anaconda.org/conda-forge/linux-64/netcdf4-1.6.4-nompi_py39h4218a78_101.conda#8f5c25bb7accd1954d8b7fc689c5975c https://conda.anaconda.org/conda-forge/linux-64/esmf-8.4.2-nompi_ha7f9e30_1.conda#f3516df9a5e2b2ef3e3be2b350f9e93d https://conda.anaconda.org/conda-forge/noarch/esmpy-8.4.2-pyhc1e730c_1.conda#4067029ad6872d49f6d43c05dd1f51a9 +https://conda.anaconda.org/conda-forge/noarch/pydata-sphinx-theme-0.13.3-pyhd8ed1ab_0.conda#07aca5f2dea315dcc16680d6891e9056 +https://conda.anaconda.org/conda-forge/noarch/sphinx-copybutton-0.5.2-pyhd8ed1ab_0.conda#ac832cc43adc79118cf6e23f1f9b8995 +https://conda.anaconda.org/conda-forge/noarch/sphinx-design-0.5.0-pyhd8ed1ab_0.conda#264b3c697fa9cdade87eb0abe4440d54 +https://conda.anaconda.org/conda-forge/noarch/sphinx-gallery-0.14.0-pyhd8ed1ab_0.conda#b3788794f88c9512393032e448428261 +https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-applehelp-1.0.7-pyhd8ed1ab_0.conda#aebfabcb60c33a89c1f9290cab49bc93 +https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-devhelp-1.0.5-pyhd8ed1ab_0.conda#ebf08f5184d8eaa486697bc060031953 +https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-htmlhelp-2.0.4-pyhd8ed1ab_0.conda#a9a89000dfd19656ad004b937eeb6828 +https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-qthelp-1.0.6-pyhd8ed1ab_0.conda#cf5c9649272c677a964a7313279e3a9b +https://conda.anaconda.org/conda-forge/noarch/sphinx-5.3.0-pyhd8ed1ab_0.tar.bz2#f9e1fcfe235d655900bfeb6aee426472 +https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-serializinghtml-1.1.9-pyhd8ed1ab_0.conda#0612e497d7860728f2cda421ea2aec09 From 97d02578336733b11b65e7e6ab09fb1553e4f24f Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 31 Aug 2023 11:00:47 +0100 Subject: [PATCH 02/29] Bump scitools/workflows from 2023.05.0 to 2023.06.0 (#282) Bumps [scitools/workflows](https://github.com/scitools/workflows) from 2023.05.0 to 2023.06.0. - [Release notes](https://github.com/scitools/workflows/releases) - [Commits](https://github.com/scitools/workflows/compare/2023.05.0...2023.06.0) --- updated-dependencies: - dependency-name: scitools/workflows dependency-type: direct:production ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/ci-manifest.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci-manifest.yml b/.github/workflows/ci-manifest.yml index 3758aad2..ae26a615 100644 --- a/.github/workflows/ci-manifest.yml +++ b/.github/workflows/ci-manifest.yml @@ -20,4 +20,4 @@ concurrency: jobs: manifest: name: "check-manifest" - uses: scitools/workflows/.github/workflows/ci-manifest.yml@2023.05.0 + uses: scitools/workflows/.github/workflows/ci-manifest.yml@2023.06.0 From 0bde40dd3cbb0f721c63ff8eb1b7771ac5f39f7c Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 7 Sep 2023 14:13:21 +0100 Subject: [PATCH 03/29] Bump scitools/workflows from 2023.06.0 to 2023.09.0 (#306) Bumps [scitools/workflows](https://github.com/scitools/workflows) from 2023.06.0 to 2023.09.0. - [Release notes](https://github.com/scitools/workflows/releases) - [Commits](https://github.com/scitools/workflows/compare/2023.06.0...2023.09.0) --- updated-dependencies: - dependency-name: scitools/workflows dependency-type: direct:production ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/ci-manifest.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci-manifest.yml b/.github/workflows/ci-manifest.yml index ae26a615..12d0d660 100644 --- a/.github/workflows/ci-manifest.yml +++ b/.github/workflows/ci-manifest.yml @@ -20,4 +20,4 @@ concurrency: jobs: manifest: name: "check-manifest" - uses: scitools/workflows/.github/workflows/ci-manifest.yml@2023.06.0 + uses: scitools/workflows/.github/workflows/ci-manifest.yml@2023.09.0 From e61fed6a3ab3d257a0658a88a348cd98c919dd90 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 7 Sep 2023 14:14:53 +0100 Subject: [PATCH 04/29] Bump actions/checkout from 3 to 4 (#305) Bumps [actions/checkout](https://github.com/actions/checkout) from 3 to 4. - [Release notes](https://github.com/actions/checkout/releases) - [Changelog](https://github.com/actions/checkout/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/checkout/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/checkout dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/benchmark.yml | 2 +- .github/workflows/ci-tests.yml | 2 +- .github/workflows/ci-wheels.yml | 4 ++-- .github/workflows/refresh-lockfiles.yml | 2 +- 4 files changed, 5 insertions(+), 5 deletions(-) diff --git a/.github/workflows/benchmark.yml b/.github/workflows/benchmark.yml index d9d58f10..843f9396 100644 --- a/.github/workflows/benchmark.yml +++ b/.github/workflows/benchmark.yml @@ -46,7 +46,7 @@ jobs: steps: - name: "checkout" - uses: actions/checkout@v3 + uses: actions/checkout@v4 with: fetch-depth: 0 - if: ${{ github.event_name == 'pull_request' }} diff --git a/.github/workflows/ci-tests.yml b/.github/workflows/ci-tests.yml index d2fe33a0..bc9e62d6 100644 --- a/.github/workflows/ci-tests.yml +++ b/.github/workflows/ci-tests.yml @@ -55,7 +55,7 @@ jobs: steps: - name: "checkout" - uses: actions/checkout@v3 + uses: actions/checkout@v4 - name: Install Nox run: | diff --git a/.github/workflows/ci-wheels.yml b/.github/workflows/ci-wheels.yml index 6647c1e0..cbc3f0d8 100644 --- a/.github/workflows/ci-wheels.yml +++ b/.github/workflows/ci-wheels.yml @@ -34,7 +34,7 @@ jobs: shell: bash -l {0} steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 with: fetch-depth: 0 @@ -72,7 +72,7 @@ jobs: steps: - name: "checkout" - uses: actions/checkout@v3 + uses: actions/checkout@v4 with: fetch-depth: 0 diff --git a/.github/workflows/refresh-lockfiles.yml b/.github/workflows/refresh-lockfiles.yml index 9562dab3..601d5519 100644 --- a/.github/workflows/refresh-lockfiles.yml +++ b/.github/workflows/refresh-lockfiles.yml @@ -24,7 +24,7 @@ jobs: gen_lockfiles: runs-on: ubuntu-latest steps: - - uses: actions/checkout@v3 + - uses: actions/checkout@v4 - name: install nox run: | source $CONDA/bin/activate base From 4f685cfaeeba05fe1a769d5975b8ac78f5c79e1e Mon Sep 17 00:00:00 2001 From: stephenworsley <49274989+stephenworsley@users.noreply.github.com> Date: Wed, 1 Nov 2023 14:02:31 +0000 Subject: [PATCH 05/29] Allow regridding for projections in non-degree type units (#178) * allow regridding for projections in non-degree type units * fix tests * add tests * fix tests * address review comments --- esmf_regrid/schemes.py | 11 +++-- esmf_regrid/tests/unit/schemes/__init__.py | 49 +++++++++++++++++++ .../unit/schemes/test_ESMFAreaWeighted.py | 6 +++ .../tests/unit/schemes/test_ESMFBilinear.py | 6 +++ .../tests/unit/schemes/test_ESMFNearest.py | 6 +++ .../unit/schemes/test__cube_to_GridInfo.py | 10 ++-- 6 files changed, 80 insertions(+), 8 deletions(-) diff --git a/esmf_regrid/schemes.py b/esmf_regrid/schemes.py index a9c2528e..21731830 100644 --- a/esmf_regrid/schemes.py +++ b/esmf_regrid/schemes.py @@ -191,10 +191,13 @@ def _cube_to_GridInfo(cube, center=False, resolution=None, mask=None): lat_bound_array = _contiguous_masked(lat.bounds, mask) # 2D coords must be AuxCoords, which do not have a circular attribute. circular = False - lon_bound_array = lon.units.convert(lon_bound_array, Unit("degrees")) - lat_bound_array = lat.units.convert(lat_bound_array, Unit("degrees")) - lon_points = lon.units.convert(lon.points, Unit("degrees")) - lat_points = lon.units.convert(lat.points, Unit("degrees")) + lon_points = lon.points + lat_points = lat.points + if crs is None: + lon_bound_array = lon.units.convert(lon_bound_array, Unit("degrees")) + lat_bound_array = lat.units.convert(lat_bound_array, Unit("degrees")) + lon_points = lon.units.convert(lon_points, Unit("degrees")) + lat_points = lon.units.convert(lat_points, Unit("degrees")) if resolution is None: grid_info = GridInfo( lon_points, diff --git a/esmf_regrid/tests/unit/schemes/__init__.py b/esmf_regrid/tests/unit/schemes/__init__.py index 7d468fc4..22fc55be 100644 --- a/esmf_regrid/tests/unit/schemes/__init__.py +++ b/esmf_regrid/tests/unit/schemes/__init__.py @@ -1,9 +1,11 @@ """Unit tests for `esmf_regrid.schemes`.""" +from iris.coord_systems import OSGB import numpy as np from numpy import ma import pytest +from esmf_regrid.schemes import ESMFAreaWeighted, ESMFBilinear, ESMFNearest from esmf_regrid.tests.unit.schemes.test__cube_to_GridInfo import _grid_cube from esmf_regrid.tests.unit.schemes.test__mesh_to_MeshInfo import ( _gridlike_mesh, @@ -166,3 +168,50 @@ def _test_mask_from_regridder(scheme, mask_keyword): np.testing.assert_allclose( getattr(rg_from_different, regridder_attr), mask_different ) + + +def _test_non_degree_crs(scheme): + """Test regridding scheme is compatible with coordinates with non-degree units.""" + coord_system = OSGB() + + # This definition comes from a small section of real user data. + n_lons_src = 2 + n_lats_src = 3 + lon_bounds = (-197500, -192500) + lat_bounds = (1247500, 1237500) + tm_cube = _grid_cube( + n_lons_src, + n_lats_src, + lon_bounds, + lat_bounds, + circular=False, + coord_system=coord_system, + standard_names=["projection_x_coordinate", "projection_y_coordinate"], + units="m", + ) + data = np.arange(n_lats_src * n_lons_src).reshape([n_lats_src, n_lons_src]) + tm_cube.data = data + + n_lons_tgt = 12 + n_lats_tgt = 14 + lon_bounds_tgt = (-13, -12.8) + lat_bounds_tgt = (60.5, 60.7) + cube_tgt = _grid_cube( + n_lons_tgt, n_lats_tgt, lon_bounds_tgt, lat_bounds_tgt, circular=True + ) + + result = tm_cube.regrid(cube_tgt, scheme()) + + # Set expected results, this varies depending on the scheme. + if scheme is ESMFAreaWeighted: + expected_sum, expected_unmasked = 50.86147272655136, 21 + elif scheme is ESMFBilinear: + expected_sum, expected_unmasked = 35.90837983047451, 13 + elif scheme is ESMFNearest: + expected_sum, expected_unmasked = 490, 168 + + # Check that the data is as expected. + assert np.isclose(result.data.sum(), expected_sum) + + # Check that the number of masked points is as expected. + assert (1 - result.data.mask).sum() == expected_unmasked diff --git a/esmf_regrid/tests/unit/schemes/test_ESMFAreaWeighted.py b/esmf_regrid/tests/unit/schemes/test_ESMFAreaWeighted.py index 49cd91c0..e9986a74 100644 --- a/esmf_regrid/tests/unit/schemes/test_ESMFAreaWeighted.py +++ b/esmf_regrid/tests/unit/schemes/test_ESMFAreaWeighted.py @@ -8,6 +8,7 @@ _test_invalid_mdtol, _test_mask_from_init, _test_mask_from_regridder, + _test_non_degree_crs, ) @@ -62,3 +63,8 @@ def test_invalid_tgt_location(): match = "For area weighted regridding, target location must be 'face'." with pytest.raises(ValueError, match=match): _ = ESMFAreaWeighted(tgt_location="node") + + +def test_non_degree_crs(): + """Test for coordinates with non-degree units.""" + _test_non_degree_crs(ESMFAreaWeighted) diff --git a/esmf_regrid/tests/unit/schemes/test_ESMFBilinear.py b/esmf_regrid/tests/unit/schemes/test_ESMFBilinear.py index 71af3b66..d92350bf 100644 --- a/esmf_regrid/tests/unit/schemes/test_ESMFBilinear.py +++ b/esmf_regrid/tests/unit/schemes/test_ESMFBilinear.py @@ -8,6 +8,7 @@ _test_invalid_mdtol, _test_mask_from_init, _test_mask_from_regridder, + _test_non_degree_crs, ) @@ -51,3 +52,8 @@ def test_mask_from_regridder(mask_keyword): Checks that use_src_mask and use_tgt_mask are passed down correctly. """ _test_mask_from_regridder(ESMFBilinear, mask_keyword) + + +def test_non_degree_crs(): + """Test for coordinates with non-degree units.""" + _test_non_degree_crs(ESMFBilinear) diff --git a/esmf_regrid/tests/unit/schemes/test_ESMFNearest.py b/esmf_regrid/tests/unit/schemes/test_ESMFNearest.py index 48b01181..85f8ec49 100644 --- a/esmf_regrid/tests/unit/schemes/test_ESMFNearest.py +++ b/esmf_regrid/tests/unit/schemes/test_ESMFNearest.py @@ -8,6 +8,7 @@ from esmf_regrid.tests.unit.schemes.__init__ import ( _test_mask_from_init, _test_mask_from_regridder, + _test_non_degree_crs, ) from esmf_regrid.tests.unit.schemes.test__cube_to_GridInfo import _grid_cube from esmf_regrid.tests.unit.schemes.test__mesh_to_MeshInfo import ( @@ -94,3 +95,8 @@ def test_mask_from_regridder(mask_keyword): Checks that use_src_mask and use_tgt_mask are passed down correctly. """ _test_mask_from_regridder(ESMFNearest, mask_keyword) + + +def test_non_degree_crs(): + """Test for coordinates with non-degree units.""" + _test_non_degree_crs(ESMFNearest) diff --git a/esmf_regrid/tests/unit/schemes/test__cube_to_GridInfo.py b/esmf_regrid/tests/unit/schemes/test__cube_to_GridInfo.py index 6d2ef88b..fa74d829 100644 --- a/esmf_regrid/tests/unit/schemes/test__cube_to_GridInfo.py +++ b/esmf_regrid/tests/unit/schemes/test__cube_to_GridInfo.py @@ -67,12 +67,14 @@ def _grid_cube( lat_outer_bounds, circular=False, coord_system=None, + standard_names=["longitude", "latitude"], + units="degrees", ): lon_points, lon_bounds = _generate_points_and_bounds(n_lons, lon_outer_bounds) lon = DimCoord( lon_points, - "longitude", - units="degrees", + standard_names[0], + units=units, bounds=lon_bounds, circular=circular, coord_system=coord_system, @@ -80,8 +82,8 @@ def _grid_cube( lat_points, lat_bounds = _generate_points_and_bounds(n_lats, lat_outer_bounds) lat = DimCoord( lat_points, - "latitude", - units="degrees", + standard_names[1], + units=units, bounds=lat_bounds, coord_system=coord_system, ) From b041fdb33d307ef28a3686305eb6a285fe76da83 Mon Sep 17 00:00:00 2001 From: Henry Wright <84939917+HGWright@users.noreply.github.com> Date: Thu, 2 Nov 2023 16:45:02 +0000 Subject: [PATCH 06/29] First pass at mesh to mesh (#311) * First pass at mesh to mesh * fix tests #1 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * remve resolution and correct ref's * remove circular * new changes to fix tests * test fix * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fix test * test fixes * match cube dimension * fixing last test * all tests fixed * adding and updating docstrings * more docstring changes --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> --- .../experimental/unstructured_scheme.py | 76 ++++++++ esmf_regrid/schemes.py | 100 +++++++++- ...est_regrid_unstructured_to_unstructured.py | 174 ++++++++++++++++++ .../unit/schemes/test_ESMFAreaWeighted.py | 8 +- .../tests/unit/schemes/test_ESMFBilinear.py | 8 +- .../tests/unit/schemes/test_ESMFNearest.py | 8 +- 6 files changed, 367 insertions(+), 7 deletions(-) create mode 100644 esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_unstructured_to_unstructured.py diff --git a/esmf_regrid/experimental/unstructured_scheme.py b/esmf_regrid/experimental/unstructured_scheme.py index f17aadcd..ccda7214 100644 --- a/esmf_regrid/experimental/unstructured_scheme.py +++ b/esmf_regrid/experimental/unstructured_scheme.py @@ -9,6 +9,8 @@ _regrid_rectilinear_to_unstructured__prepare, _regrid_unstructured_to_rectilinear__perform, _regrid_unstructured_to_rectilinear__prepare, + _regrid_unstructured_to_unstructured__perform, + _regrid_unstructured_to_unstructured__prepare, ) @@ -353,3 +355,77 @@ def __init__( self.resolution = src_resolution self.mesh, self.location = self._tgt self.grid_x, self.grid_y = self._src + + +def regrid_unstructured_to_unstructured( + src_mesh_cube, + tgt_mesh_cube, + mdtol=0, + method="conservative", + use_src_mask=False, + use_tgt_mask=False, +): + r""" + Regrid rectilinear :class:`~iris.cube.Cube` onto unstructured mesh. + + Return a new :class:`~iris.cube.Cube` with :attr:`~iris.cube.Cube.data` + values calculated using weights generated by :mod:`esmpy` to give the weighted + mean of :attr:`~iris.cube.Cube.data` values from ``src_mesh_cube`` regridded onto the + horizontal mesh of ``tgt_mesh_cube``. The resulting cube will have the same + ``mesh_dim`` as ``src_mesh_cube``. + + Parameters + ---------- + src_mesh_cube : :class:`iris.cube.Cube` + A unstructured instance of :class:`~iris.cube.Cube` that supplies the data, + metadata and coordinates. + tgt_mesh_cube : :class:`iris.cube.Cube` + An unstructured instance of :class:`~iris.cube.Cube` that supplies the desired + horizontal mesh definition. + mdtol : float, default=0 + Tolerance of missing data. The value returned in each element of the + returned :class:`~iris.cube.Cube`\\ 's :attr:`~iris.cube.Cube.data` array + will be masked if the fraction of masked + data in the overlapping cells of the source cube exceeds ``mdtol``. This + fraction is calculated based on the area of masked cells within each + target cell. ``mdtol=0`` means no missing data is tolerated while ``mdtol=1`` + will mean the resulting element will be masked if and only if all the + overlapping cells of the ``src_cube`` are masked. + method : str, default="conservative" + Either "conservative", "bilinear" or "nearest". Corresponds to the :mod:`esmpy` methods + :attr:`~esmpy.api.constants.RegridMethod.CONSERVE` or + :attr:`~esmpy.api.constants.RegridMethod.BILINEAR` or + :attr:`~esmpy.api.constants.RegridMethod.NEAREST` used to calculate weights. + use_src_mask : :obj:`~numpy.typing.ArrayLike` or bool, default=False + Either an array representing the cells in the source to ignore, or else + a boolean value. If True, this array is taken from the mask on the data + in ``src_cube``. If False, no mask will be taken and all points will + be used in weights calculation. + use_tgt_mask : :obj:`~numpy.typing.ArrayLike` or bool, default=False + Either an array representing the cells in the target to ignore, or else + a boolean value. If True, this array is taken from the mask on the data + in ``grid_cube``. If False, no mask will be taken and all points + will be used in weights calculation. + + Returns + ------- + :class:`iris.cube.Cube` + A new :class:`~iris.cube.Cube` instance. + + """ + if tgt_mesh_cube.mesh is None: + raise ValueError("mesh_cube has no mesh.") + src_mask = _get_mask(src_mesh_cube, use_src_mask) + tgt_mask = _get_mask(tgt_mesh_cube, use_tgt_mask) + + regrid_info = _regrid_unstructured_to_unstructured__prepare( + src_mesh_cube, + tgt_mesh_cube, + method=method, + src_mask=src_mask, + tgt_mask=tgt_mask, + ) + result = _regrid_unstructured_to_unstructured__perform( + src_mesh_cube, regrid_info, mdtol + ) + return result diff --git a/esmf_regrid/schemes.py b/esmf_regrid/schemes.py index 21731830..59e723d2 100644 --- a/esmf_regrid/schemes.py +++ b/esmf_regrid/schemes.py @@ -516,6 +516,13 @@ def _regrid_rectilinear_to_rectilinear__prepare( src_mask=None, tgt_mask=None, ): + """ + First (setup) part of 'regrid_rectilinear_to_rectilinear'. + + Check inputs and calculate the sparse regrid matrix and related info. + The 'regrid info' returned can be re-used over many 2d slices. + + """ tgt_x = _get_coord(tgt_grid_cube, "x") tgt_y = _get_coord(tgt_grid_cube, "y") src_x = _get_coord(src_grid_cube, "x") @@ -544,6 +551,12 @@ def _regrid_rectilinear_to_rectilinear__prepare( def _regrid_rectilinear_to_rectilinear__perform(src_cube, regrid_info, mdtol): + """ + Second (regrid) part of 'regrid_rectilinear_to_rectilinear'. + + Perform the prepared regrid calculation on a single cube. + + """ grid_x_dim, grid_y_dim = regrid_info.dims grid_x, grid_y = regrid_info.target regridder = regrid_info.regridder @@ -769,17 +782,96 @@ def _regrid_rectilinear_to_unstructured__perform(src_cube, regrid_info, mdtol): def _regrid_unstructured_to_unstructured__prepare( - src_grid_cube, - target_mesh_cube, + src_mesh_cube, + tgt_cube_or_mesh, method, precomputed_weights=None, + src_mask=None, + tgt_mask=None, + src_location=None, tgt_location=None, ): - raise NotImplementedError + """ + First (setup) part of 'regrid_unstructured_to_unstructured'. + + Check inputs and calculate the sparse regrid matrix and related info. + The 'regrid info' returned can be re-used over many 2d slices. + + """ + if isinstance(tgt_cube_or_mesh, Mesh): + mesh = tgt_cube_or_mesh + location = tgt_location + else: + mesh = tgt_cube_or_mesh.mesh + location = tgt_cube_or_mesh.location + + mesh_dim = src_mesh_cube.mesh_dim() + + src_meshinfo = _make_meshinfo( + src_mesh_cube, method, src_mask, "source", location=src_location + ) + tgt_meshinfo = _make_meshinfo( + tgt_cube_or_mesh, method, tgt_mask, "target", location=tgt_location + ) + + regridder = Regridder( + src_meshinfo, + tgt_meshinfo, + method=method, + precomputed_weights=precomputed_weights, + ) + + regrid_info = RegridInfo( + dims=[mesh_dim], + target=MeshRecord(mesh, location), + regridder=regridder, + ) + + return regrid_info def _regrid_unstructured_to_unstructured__perform(src_cube, regrid_info, mdtol): - raise NotImplementedError + """ + Second (regrid) part of 'regrid_unstructured_to_unstructured'. + + Perform the prepared regrid calculation on a single cube. + + """ + (mesh_dim,) = regrid_info.dims + mesh, location = regrid_info.target + regridder = regrid_info.regridder + + regrid = functools.partial( + _regrid_along_dims, + regridder, + dims=[mesh_dim], + num_out_dims=1, + mdtol=mdtol, + ) + if location == "face": + face_node = mesh.face_node_connectivity + chunk_shape = (face_node.shape[face_node.location_axis],) + elif location == "node": + chunk_shape = mesh.node_coords[0].shape + else: + raise NotImplementedError(f"Unrecognised location {location}.") + + new_data = _map_complete_blocks( + src_cube, + regrid, + (mesh_dim,), + chunk_shape, + ) + + new_cube = _create_cube( + new_data, + src_cube, + (mesh_dim,), + mesh.to_MeshCoords(location), + 1, + ) + + return new_cube def regrid_rectilinear_to_rectilinear( diff --git a/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_unstructured_to_unstructured.py b/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_unstructured_to_unstructured.py new file mode 100644 index 00000000..8be55fe9 --- /dev/null +++ b/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_unstructured_to_unstructured.py @@ -0,0 +1,174 @@ +"""Unit tests for :func:`esmf_regrid.experimental.unstructured_scheme.regrid_unstructured_to_unstructured`.""" + +from iris.coords import AuxCoord, DimCoord +from iris.cube import Cube +import numpy as np +import pytest + +from esmf_regrid.experimental.unstructured_scheme import ( + regrid_unstructured_to_unstructured, +) +from esmf_regrid.tests.unit.schemes.test__mesh_to_MeshInfo import ( + _gridlike_mesh_cube, +) +from esmf_regrid.tests.unit.schemes.test__regrid_unstructured_to_rectilinear__prepare import ( + _flat_mesh_cube, + _full_mesh, +) + + +def _add_metadata(cube): + result = cube.copy() + result.units = "K" + result.attributes = {"a": 1} + result.standard_name = "air_temperature" + scalar_height = AuxCoord([5], units="m", standard_name="height") + scalar_time = DimCoord([10], units="s", standard_name="time") + result.add_aux_coord(scalar_height) + result.add_aux_coord(scalar_time) + return result + + +def test_flat_cubes(): + """ + Basic test for :func:`esmf_regrid.experimental.unstructured_scheme.regrid_unstructured_to_unstructured`. + + Tests with flat cubes as input (a 1D mesh cube and a 2D grid cube). + """ + src = _flat_mesh_cube() + + n_lons = 6 + n_lats = 5 + tgt = _flat_mesh_cube() + # Ensure data in the target grid is different to the expected data. + # i.e. target grid data is all zero, expected data is all one + tgt.data[:] = 0 + + src = _add_metadata(src) + src.data[:] = 1 # Ensure all data in the source is one. + result = regrid_unstructured_to_unstructured(src, tgt) + + expected_data = np.ones([n_lats, n_lons]) + expected_cube = _add_metadata(tgt) + + # Lenient check for data. + assert np.allclose(expected_data, result.data) + + # Check metadata and scalar coords. + expected_cube.data = result.data + assert expected_cube == result + + +@pytest.mark.parametrize("method", ("bilinear", "nearest")) +def test_node_friendly_methods(method): + """ + Basic test for :func:`esmf_regrid.experimental.unstructured_scheme.regrid_unstructured_to_unstructured`. + + Tests with the bilinear and nearest method. + """ + n_lons = 6 + n_lats = 5 + src = _gridlike_mesh_cube(n_lons, n_lats, location="node") + tgt = _gridlike_mesh_cube(n_lons, n_lats, location="node") + # Ensure data in the target mesh is different to the expected data. + # i.e. target mesh data is all zero, expected data is all one + tgt.data[:] = 0 + + src = _add_metadata(src) + src.data[:] = 1 # Ensure all data in the source is one. + result = regrid_unstructured_to_unstructured(src, tgt, method=method) + + expected_data = np.ones_like(tgt.data) + expected_cube = _add_metadata(tgt) + + # Lenient check for data. + assert np.allclose(expected_data, result.data) + + # Check metadata and scalar coords. + expected_cube.data = result.data + assert expected_cube == result + + +def test_invalid_args(): + """ + Test for :func:`esmf_regrid.experimental.unstructured_scheme.regrid_unstructured_to_unstructured`. + + Tests that an appropriate error is raised when arguments are invalid. + """ + n_lons = 6 + n_lats = 5 + node_src = _gridlike_mesh_cube(n_lons, n_lats, location="node") + edge_src = _gridlike_mesh_cube(n_lons, n_lats, location="edge") + face_src = _gridlike_mesh_cube(n_lons, n_lats, location="face") + tgt = _gridlike_mesh_cube(n_lons, n_lats) + + with pytest.raises(NotImplementedError): + _ = regrid_unstructured_to_unstructured(face_src, tgt, method="other") + with pytest.raises(ValueError) as excinfo: + _ = regrid_unstructured_to_unstructured(node_src, tgt, method="conservative") + expected_message = ( + "Conservative regridding requires a source cube located on " + "the face of a cube, target cube had the node location." + ) + assert expected_message in str(excinfo.value) + with pytest.raises(ValueError) as excinfo: + _ = regrid_unstructured_to_unstructured(edge_src, tgt, method="bilinear") + expected_message = ( + "bilinear regridding requires a source cube with a node " + "or face location, target cube had the edge location." + ) + assert expected_message in str(excinfo.value) + with pytest.raises(ValueError) as excinfo: + _ = regrid_unstructured_to_unstructured(edge_src, tgt, method="nearest") + expected_message = ( + "nearest regridding requires a source cube with a node " + "or face location, target cube had the edge location." + ) + assert expected_message in str(excinfo.value) + + +def test_multidim_cubes(): + """ + Test for :func:`esmf_regrid.experimental.unstructured_scheme.regrid_unstructured_to_unstructured`. + + Tests with multidimensional cubes. The source cube contains + coordinates on the dimensions before and after the mesh dimension. + """ + + mesh = _full_mesh() + mesh_length = mesh.connectivity(contains_face=True).shape[0] + + h = 2 + t = 3 + height = DimCoord(np.arange(h), standard_name="height") + time = DimCoord(np.arange(t), standard_name="time") + + src_data = np.empty([t, mesh_length, h]) + src_data[:] = np.arange(t * h).reshape([t, h])[:, np.newaxis, :] + cube = Cube(src_data) + mesh_coord_x, mesh_coord_y = mesh.to_MeshCoords("face") + cube.add_aux_coord(mesh_coord_x, 1) + cube.add_aux_coord(mesh_coord_y, 1) + cube.add_dim_coord(time, 0) + cube.add_dim_coord(height, 2) + + n_lons = 6 + n_lats = 5 + tgt = _gridlike_mesh_cube(n_lons, n_lats) + + result = regrid_unstructured_to_unstructured(cube, tgt) + + # Lenient check for data. + expected_data = np.empty([t, n_lats * n_lons, h]) + expected_data[:] = np.arange(t * h).reshape(t, h)[:, np.newaxis, :] + assert np.allclose(expected_data, result.data) + + expected_cube = Cube(expected_data) + expected_cube.add_dim_coord(time, 0) + expected_cube.add_aux_coord(tgt.coord("latitude"), 1) + expected_cube.add_aux_coord(tgt.coord("longitude"), 1) + expected_cube.add_dim_coord(height, 2) + + # Check metadata and scalar coords. + result.data = expected_data + assert expected_cube == result diff --git a/esmf_regrid/tests/unit/schemes/test_ESMFAreaWeighted.py b/esmf_regrid/tests/unit/schemes/test_ESMFAreaWeighted.py index e9986a74..e73bee5d 100644 --- a/esmf_regrid/tests/unit/schemes/test_ESMFAreaWeighted.py +++ b/esmf_regrid/tests/unit/schemes/test_ESMFAreaWeighted.py @@ -14,7 +14,13 @@ @pytest.mark.parametrize( "src_type,tgt_type", - [("grid", "grid"), ("grid", "mesh"), ("grid", "just_mesh"), ("mesh", "grid")], + [ + ("grid", "grid"), + ("grid", "mesh"), + ("grid", "just_mesh"), + ("mesh", "grid"), + ("mesh", "mesh"), + ], ) def test_cube_regrid(src_type, tgt_type): """ diff --git a/esmf_regrid/tests/unit/schemes/test_ESMFBilinear.py b/esmf_regrid/tests/unit/schemes/test_ESMFBilinear.py index d92350bf..393bbe0a 100644 --- a/esmf_regrid/tests/unit/schemes/test_ESMFBilinear.py +++ b/esmf_regrid/tests/unit/schemes/test_ESMFBilinear.py @@ -14,7 +14,13 @@ @pytest.mark.parametrize( "src_type,tgt_type", - [("grid", "grid"), ("grid", "mesh"), ("grid", "just_mesh"), ("mesh", "grid")], + [ + ("grid", "grid"), + ("grid", "mesh"), + ("grid", "just_mesh"), + ("mesh", "grid"), + ("mesh", "mesh"), + ], ) def test_cube_regrid(src_type, tgt_type): """ diff --git a/esmf_regrid/tests/unit/schemes/test_ESMFNearest.py b/esmf_regrid/tests/unit/schemes/test_ESMFNearest.py index 85f8ec49..b5812b5a 100644 --- a/esmf_regrid/tests/unit/schemes/test_ESMFNearest.py +++ b/esmf_regrid/tests/unit/schemes/test_ESMFNearest.py @@ -19,7 +19,13 @@ @pytest.mark.parametrize( "src_type,tgt_type", - [("grid", "grid"), ("grid", "mesh"), ("grid", "just_mesh"), ("mesh", "grid")], + [ + ("grid", "grid"), + ("grid", "mesh"), + ("grid", "just_mesh"), + ("mesh", "grid"), + ("mesh", "mesh"), + ], ) def test_cube_regrid(src_type, tgt_type): """ From 5ead49eede21ab36a645dc2843056a71f7fa0adc Mon Sep 17 00:00:00 2001 From: stephenworsley <49274989+stephenworsley@users.noreply.github.com> Date: Fri, 3 Nov 2023 11:32:16 +0000 Subject: [PATCH 07/29] Update to v0.9 (#313) * update to v0.9.0 * update to v0.9.0 --- CHANGELOG.md | 12 +++++++++++- esmf_regrid/__init__.py | 2 +- 2 files changed, 12 insertions(+), 2 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 34d37401..17bc299e 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -5,7 +5,17 @@ All notable changes to this project will be documented in this file. The format is based on [Keep a Changelog](http://keepachangelog.com/) and this project adheres to [Semantic Versioning](http://semver.org/). -## [Unreleased] +## [0.9] - 2023-11-03 + +### Added + +- [PR#178](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/178) + Added support for coordinate systems with non-degree type units. + [@stephenworsley](https://github.com/stephenworsley) + +- [PR#311](https://github.com/SciTools-incubator/iris-esmf-regrid/pull/311) + Added support for Mesh to Mesh regridding. + [@HGWright](https://github.com/HGWright) ### Fixed diff --git a/esmf_regrid/__init__.py b/esmf_regrid/__init__.py index 3170a7a5..6235c53b 100644 --- a/esmf_regrid/__init__.py +++ b/esmf_regrid/__init__.py @@ -10,4 +10,4 @@ from .schemes import * -__version__ = "0.9.dev0" +__version__ = "0.9.0" From abc3856692e798a27078a5e689664ce933a767d1 Mon Sep 17 00:00:00 2001 From: stephenworsley <49274989+stephenworsley@users.noreply.github.com> Date: Fri, 3 Nov 2023 14:05:47 +0000 Subject: [PATCH 08/29] update to v0.10.dev0 (#314) --- esmf_regrid/__init__.py | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/esmf_regrid/__init__.py b/esmf_regrid/__init__.py index 6235c53b..6d4613de 100644 --- a/esmf_regrid/__init__.py +++ b/esmf_regrid/__init__.py @@ -10,4 +10,4 @@ from .schemes import * -__version__ = "0.9.0" +__version__ = "0.10.dev0" From be33a81daf6ce794adc4a1fa9a7286a8cf2bbe05 Mon Sep 17 00:00:00 2001 From: Martin Yeo <40734014+trexfeathers@users.noreply.github.com> Date: Wed, 15 Nov 2023 11:46:26 +0000 Subject: [PATCH 09/29] Flake8 compliant type checking. (#316) --- .../test__regrid_unstructured_to_rectilinear__prepare.py | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/esmf_regrid/tests/unit/schemes/test__regrid_unstructured_to_rectilinear__prepare.py b/esmf_regrid/tests/unit/schemes/test__regrid_unstructured_to_rectilinear__prepare.py index 0e585b0d..a14fcfa1 100644 --- a/esmf_regrid/tests/unit/schemes/test__regrid_unstructured_to_rectilinear__prepare.py +++ b/esmf_regrid/tests/unit/schemes/test__regrid_unstructured_to_rectilinear__prepare.py @@ -68,5 +68,5 @@ def test_flat_cubes(): assert mesh_dim == 0 assert grid_x == tgt.coord("longitude") assert grid_y == tgt.coord("latitude") - assert type(regridder.tgt) == GridInfo - assert type(regridder.src) == MeshInfo + assert type(regridder.tgt) is GridInfo + assert type(regridder.src) is MeshInfo From e83b7be5d212fc71877e66154dab80a49e636b19 Mon Sep 17 00:00:00 2001 From: Elias <110238618+ESadek-MO@users.noreply.github.com> Date: Thu, 30 Nov 2023 16:46:11 +0000 Subject: [PATCH 10/29] updated for enums (#293) * updated for enums * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * tried another form of import * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * moved import constants to bottom; it's something like this * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * I've fixed this before, but I can't remember how * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * I added a note to my old one, hopefully this does the trick * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * testing this works * hopefully fixed the type error problems * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * updated test to fix one error * figuring it out * fixed no method error * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * removed NotImplementedError * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * missed one * fixed flake8 * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixed flake8 again * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixed flake8 the third * updated to include a checker function in constants, with necessary tests * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci * fixed flake8 conflicts * missed one: fixed another flake8 conflict * more flake8 * flake8 2: electric imperativemoodaloo * more flake8 * fixed test failure * fixed test failure * fixed error messages to use enums * hasn't this been a journey. Fixed error message * actioned review comments * fixed precommit and error message * corrected constants error message * corrected docstring --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> --- esmf_regrid/__init__.py | 2 + esmf_regrid/constants.py | 60 +++++++++++++++++++ esmf_regrid/esmf_regridder.py | 47 ++++++--------- esmf_regrid/experimental/io.py | 9 ++- .../experimental/unstructured_scheme.py | 49 ++++++--------- esmf_regrid/schemes.py | 60 +++++++------------ .../esmf_regridder/test_Regridder.py | 5 +- .../unit/esmf_regridder/test_Constants.py | 52 ++++++++++++++++ .../unit/esmf_regridder/test_Regridder.py | 3 +- .../experimental/io/test_round_tripping.py | 35 ++++++++--- .../unstructured_regrid/test_MeshInfo.py | 13 +++- .../test_GridToMeshESMFRegridder.py | 29 +++++---- .../test_MeshToGridESMFRegridder.py | 32 ++++++---- ...test_regrid_rectilinear_to_unstructured.py | 25 +++++--- ...test_regrid_unstructured_to_rectilinear.py | 25 +++++--- ...est_regrid_unstructured_to_unstructured.py | 4 +- .../tests/unit/schemes/test__ESMFRegridder.py | 2 +- ...id_unstructured_to_rectilinear__prepare.py | 4 +- 18 files changed, 303 insertions(+), 153 deletions(-) create mode 100644 esmf_regrid/constants.py create mode 100644 esmf_regrid/tests/unit/esmf_regridder/test_Constants.py diff --git a/esmf_regrid/__init__.py b/esmf_regrid/__init__.py index 6d4613de..850de104 100644 --- a/esmf_regrid/__init__.py +++ b/esmf_regrid/__init__.py @@ -7,6 +7,8 @@ except ImportError: raise exc +# constants needs to be above schemes, as it is used within +from .constants import Constants, check_method, check_norm from .schemes import * diff --git a/esmf_regrid/constants.py b/esmf_regrid/constants.py new file mode 100644 index 00000000..2335d60e --- /dev/null +++ b/esmf_regrid/constants.py @@ -0,0 +1,60 @@ +"""Holds all enums created for esmf-regrid.""" + +from enum import Enum + +from . import esmpy + + +class Constants: + """Encompassing class for best practice import.""" + + class Method(Enum): + """holds enums for Method values.""" + + CONSERVATIVE = esmpy.RegridMethod.CONSERVE + BILINEAR = esmpy.RegridMethod.BILINEAR + NEAREST = esmpy.RegridMethod.NEAREST_STOD + + class NormType(Enum): + """holds enums for norm types.""" + + FRACAREA = esmpy.api.constants.NormType.FRACAREA + DSTAREA = esmpy.api.constants.NormType.DSTAREA + + +method_dict = { + "conservative": Constants.Method.CONSERVATIVE, + "bilinear": Constants.Method.BILINEAR, + "nearest": Constants.Method.NEAREST, +} + +norm_dict = { + "fracarea": Constants.NormType.FRACAREA, + "dstarea": Constants.NormType.DSTAREA, +} + + +def check_method(method): + """Check that method is a member of the `Constants.Method` enum or raise an error.""" + if method in method_dict.keys(): + result = method_dict[method] + elif method in method_dict.values(): + result = method + else: + raise ValueError( + f"Method must be a member of `Constants.Method` enum, instead got {method}" + ) + return result + + +def check_norm(norm): + """Check that normtype is a member of the `Constants.NormType` enum or raise an error.""" + if norm in norm_dict.keys(): + result = norm_dict[norm] + elif norm in norm_dict.values(): + result = norm + else: + raise ValueError( + f"NormType must be a member of `Constants.NormType` enum, instead got {norm}" + ) + return result diff --git a/esmf_regrid/esmf_regridder.py b/esmf_regrid/esmf_regridder.py index 094532f4..07d81071 100644 --- a/esmf_regrid/esmf_regridder.py +++ b/esmf_regrid/esmf_regridder.py @@ -5,6 +5,7 @@ import scipy.sparse import esmf_regrid +from esmf_regrid import check_method, check_norm, Constants from . import esmpy from ._esmf_sdo import GridInfo, RefinedGridInfo @@ -57,7 +58,9 @@ def _weights_dict_to_sparse_array(weights, shape, index_offsets): class Regridder: """Regridder for directly interfacing with :mod:`esmpy`.""" - def __init__(self, src, tgt, method="conservative", precomputed_weights=None): + def __init__( + self, src, tgt, method=Constants.Method.CONSERVATIVE, precomputed_weights=None + ): """ Create a regridder from descriptions of horizontal grids/meshes. @@ -76,11 +79,8 @@ def __init__(self, src, tgt, method="conservative", precomputed_weights=None): Describes the target mesh/grid. Data output by this regridder will be a :class:`numpy.ndarray` whose shape is compatible with ``tgt``. - method : str - Either "conservative", "bilinear" or "nearest". Corresponds to the :mod:`esmpy` methods - :attr:`~esmpy.api.constants.RegridMethod.CONSERVE`, - :attr:`~esmpy.api.constants.RegridMethod.BILINEAR` or - :attr:`~esmpy.api.constants.RegridMethod.NEAREST_STOD` used to calculate weights. + method : :class:`Constants.Method` + The method to be used to calculate weights. precomputed_weights : :class:`scipy.sparse.spmatrix`, optional If ``None``, :mod:`esmpy` will be used to calculate regridding weights. Otherwise, :mod:`esmpy` will be bypassed @@ -88,18 +88,8 @@ def __init__(self, src, tgt, method="conservative", precomputed_weights=None): """ self.src = src self.tgt = tgt - - if method == "conservative": - esmf_regrid_method = esmpy.RegridMethod.CONSERVE - elif method == "bilinear": - esmf_regrid_method = esmpy.RegridMethod.BILINEAR - elif method == "nearest": - esmf_regrid_method = esmpy.RegridMethod.NEAREST_STOD - else: - raise ValueError( - f"method must be either 'bilinear', 'conservative' or 'nearest', got '{method}'." - ) - self.method = method + # type checks method + self.method = check_method(method) self.esmf_regrid_version = esmf_regrid.__version__ if precomputed_weights is None: @@ -107,7 +97,7 @@ def __init__(self, src, tgt, method="conservative", precomputed_weights=None): weights_dict = _get_regrid_weights_dict( src.make_esmf_field(), tgt.make_esmf_field(), - regrid_method=esmf_regrid_method, + regrid_method=method.value, ) self.weight_matrix = _weights_dict_to_sparse_array( weights_dict, @@ -144,7 +134,7 @@ def __init__(self, src, tgt, method="conservative", precomputed_weights=None): self.esmf_version = None self.weight_matrix = precomputed_weights - def regrid(self, src_array, norm_type="fracarea", mdtol=1): + def regrid(self, src_array, norm_type=Constants.NormType.FRACAREA, mdtol=1): """ Perform regridding on an array of data. @@ -152,11 +142,9 @@ def regrid(self, src_array, norm_type="fracarea", mdtol=1): ---------- src_array : :obj:`~numpy.typing.ArrayLike` Array whose shape is compatible with ``self.src`` - norm_type : str - Either ``fracarea`` or ``dstarea``, defaults to ``fracarea``. Determines the - type of normalisation applied to the weights. Normalisations correspond - to :mod:`esmpy` constants :attr:`~esmpy.api.constants.NormType.FRACAREA` and - :attr:`~esmpy.api.constants.NormType.DSTAREA`. + norm_type : :class:`Constants.NormType` + Either ``Constants.NormType.FRACAREA`` or ``Constants.NormType.DSTAREA``. + Determines the type of normalisation applied to the weights. mdtol : float, default=1 A number between 0 and 1 describing the missing data tolerance. Depending on the value of ``mdtol``, if a cell in the target grid is not @@ -173,6 +161,9 @@ def regrid(self, src_array, norm_type="fracarea", mdtol=1): An array whose shape is compatible with ``self.tgt``. """ + # Sets default value, as this can't be done with class attributes within method call + norm_type = check_norm(norm_type) + array_shape = src_array.shape main_shape = array_shape[-self.src.dims :] if main_shape != self.src.shape: @@ -190,12 +181,10 @@ def regrid(self, src_array, norm_type="fracarea", mdtol=1): tgt_mask = weight_sums > 1 - mdtol masked_weight_sums = weight_sums * tgt_mask normalisations = np.ones([self.tgt.size, extra_size]) - if norm_type == "fracarea": + if norm_type == Constants.NormType.FRACAREA: normalisations[tgt_mask] /= masked_weight_sums[tgt_mask] - elif norm_type == "dstarea": + elif norm_type == Constants.NormType.DSTAREA: pass - else: - raise ValueError(f'Normalisation type "{norm_type}" is not supported') normalisations = ma.array(normalisations, mask=np.logical_not(tgt_mask)) flat_src = self.src._array_to_matrix(ma.filled(src_array, 0.0)) diff --git a/esmf_regrid/experimental/io.py b/esmf_regrid/experimental/io.py index 2df56971..624820c3 100644 --- a/esmf_regrid/experimental/io.py +++ b/esmf_regrid/experimental/io.py @@ -8,6 +8,7 @@ import scipy.sparse import esmf_regrid +from esmf_regrid import check_method, Constants from esmf_regrid.experimental.unstructured_scheme import ( GridToMeshESMFRegridder, MeshToGridESMFRegridder, @@ -109,7 +110,8 @@ def _standard_grid_cube(grid, name): ) raise TypeError(msg) - method = rg.method + method = str(check_method(rg.method).name) + resolution = rg.resolution weight_matrix = rg.regridder.weight_matrix @@ -203,7 +205,10 @@ def load_regridder(filename): # Determine the regridding method, allowing for files created when # conservative regridding was the only method. - method = weights_cube.attributes.get(METHOD, "conservative") + method = getattr( + Constants.Method, weights_cube.attributes.get(METHOD, "CONSERVATIVE") + ) + resolution = weights_cube.attributes.get(RESOLUTION, None) if resolution is not None: resolution = int(resolution) diff --git a/esmf_regrid/experimental/unstructured_scheme.py b/esmf_regrid/experimental/unstructured_scheme.py index ccda7214..2c8ecf5c 100644 --- a/esmf_regrid/experimental/unstructured_scheme.py +++ b/esmf_regrid/experimental/unstructured_scheme.py @@ -2,6 +2,7 @@ from iris.experimental.ugrid import Mesh +from esmf_regrid import check_method, Constants from esmf_regrid.schemes import ( _ESMFRegridder, _get_mask, @@ -18,7 +19,7 @@ def regrid_unstructured_to_rectilinear( src_cube, grid_cube, mdtol=0, - method="conservative", + method=Constants.Method.CONSERVATIVE, tgt_resolution=None, use_src_mask=False, use_tgt_mask=False, @@ -59,11 +60,8 @@ def regrid_unstructured_to_rectilinear( target cell. ``mdtol=0`` means no missing data is tolerated while ``mdtol=1`` will mean the resulting element will be masked if and only if all the overlapping cells of ``src_cube`` are masked. - method : str, default="conservative" - Either "conservative", "bilinear" or "nearest". Corresponds to the :mod:`esmpy` methods - :attr:`~esmpy.api.constants.RegridMethod.CONSERVE` or - :attr:`~esmpy.api.constants.RegridMethod.BILINEAR` or - :attr:`~esmpy.api.constants.RegridMethod.NEAREST` used to calculate weights. + method : :class:`Constants.Method`, default=Constants.Method.CONSERVATIVE + The method used to calculate weights. tgt_resolution : int, optional If present, represents the amount of latitude slices per cell given to ESMF for calculation. @@ -88,6 +86,7 @@ def regrid_unstructured_to_rectilinear( raise ValueError("src_cube has no mesh.") src_mask = _get_mask(src_cube, use_src_mask) tgt_mask = _get_mask(grid_cube, use_tgt_mask) + method = check_method(method) regrid_info = _regrid_unstructured_to_rectilinear__prepare( src_cube, @@ -109,7 +108,7 @@ def __init__( src, tgt, mdtol=None, - method="conservative", + method=Constants.Method.CONSERVATIVE, precomputed_weights=None, tgt_resolution=None, use_src_mask=False, @@ -131,11 +130,8 @@ def __init__( ``mdtol=1`` will mean the resulting element will be masked if and only if all the contributing elements of data are masked. Defaults to 1 for conservative regregridding and 0 for bilinear regridding. - method : str, default="conservative" - Either "conservative", "bilinear" or "nearest". Corresponds to the :mod:`esmpy` - methods :attr:`~esmpy.api.constants.RegridMethod.CONSERVE` or - :attr:`~esmpy.api.constants.RegridMethod.BILINEAR` or - :attr:`~esmpy.api.constants.RegridMethod.NEAREST` used to calculate weights. + method : :class:`Constants.Method`, default=Constants.Method.CONSERVATIVE + The method used to calculate weights. precomputed_weights : :class:`scipy.sparse.spmatrix`, optional If ``None``, :mod:`esmpy` will be used to calculate regridding weights. Otherwise, :mod:`esmpy` will be bypassed @@ -185,7 +181,7 @@ def regrid_rectilinear_to_unstructured( src_cube, mesh_cube, mdtol=0, - method="conservative", + method=Constants.Method.CONSERVATIVE, src_resolution=None, use_src_mask=False, use_tgt_mask=False, @@ -230,11 +226,8 @@ def regrid_rectilinear_to_unstructured( target cell. ``mdtol=0`` means no missing data is tolerated while ``mdtol=1`` will mean the resulting element will be masked if and only if all the overlapping cells of the ``src_cube`` are masked. - method : str, default="conservative" - Either "conservative", "bilinear" or "nearest". Corresponds to the :mod:`esmpy` methods - :attr:`~esmpy.api.constants.RegridMethod.CONSERVE` or - :attr:`~esmpy.api.constants.RegridMethod.BILINEAR` or - :attr:`~esmpy.api.constants.RegridMethod.NEAREST` used to calculate weights. + method : :class:`Constants.Method`, default=Constants.Method.CONSERVATIVE + The method used to calculate weights. src_resolution : int, optional If present, represents the amount of latitude slices per cell given to ESMF for calculation. @@ -259,6 +252,7 @@ def regrid_rectilinear_to_unstructured( raise ValueError("mesh_cube has no mesh.") src_mask = _get_mask(src_cube, use_src_mask) tgt_mask = _get_mask(mesh_cube, use_tgt_mask) + method = check_method(method) regrid_info = _regrid_rectilinear_to_unstructured__prepare( src_cube, @@ -280,7 +274,7 @@ def __init__( src, tgt, mdtol=None, - method="conservative", + method=Constants.Method.CONSERVATIVE, precomputed_weights=None, src_resolution=None, use_src_mask=False, @@ -304,11 +298,8 @@ def __init__( ``mdtol=1`` will mean the resulting element will be masked if and only if all the contributing elements of data are masked. Defaults to 1 for conservative regregridding and 0 for bilinear regridding. - method : str, default="conservative" - Either "conservative", "bilinear" or "nearest". Corresponds to the :mod:`esmpy` - methods :attr:`~esmpy.api.constants.RegridMethod.CONSERVE` or - :attr:`~esmpy.api.constants.RegridMethod.BILINEAR` or - :attr:`~esmpy.api.constants.RegridMethod.NEAREST` used to calculate weights. + method : :class:`Constants.Method`, default=Constants.Method.CONSERVATIVE + The method used to calculate weights. precomputed_weights : :class:`scipy.sparse.spmatrix`, optional If ``None``, :mod:`esmpy` will be used to calculate regridding weights. Otherwise, :mod:`esmpy` will be bypassed @@ -361,7 +352,7 @@ def regrid_unstructured_to_unstructured( src_mesh_cube, tgt_mesh_cube, mdtol=0, - method="conservative", + method=Constants.Method.CONSERVATIVE, use_src_mask=False, use_tgt_mask=False, ): @@ -391,11 +382,8 @@ def regrid_unstructured_to_unstructured( target cell. ``mdtol=0`` means no missing data is tolerated while ``mdtol=1`` will mean the resulting element will be masked if and only if all the overlapping cells of the ``src_cube`` are masked. - method : str, default="conservative" - Either "conservative", "bilinear" or "nearest". Corresponds to the :mod:`esmpy` methods - :attr:`~esmpy.api.constants.RegridMethod.CONSERVE` or - :attr:`~esmpy.api.constants.RegridMethod.BILINEAR` or - :attr:`~esmpy.api.constants.RegridMethod.NEAREST` used to calculate weights. + method : :class:`Constants.Method`, default=Constants.Method.CONSERVATIVE + The method used to calculate weights. use_src_mask : :obj:`~numpy.typing.ArrayLike` or bool, default=False Either an array representing the cells in the source to ignore, or else a boolean value. If True, this array is taken from the mask on the data @@ -413,6 +401,7 @@ def regrid_unstructured_to_unstructured( A new :class:`~iris.cube.Cube` instance. """ + method = check_method(method) if tgt_mesh_cube.mesh is None: raise ValueError("mesh_cube has no mesh.") src_mask = _get_mask(src_mesh_cube, use_src_mask) diff --git a/esmf_regrid/schemes.py b/esmf_regrid/schemes.py index 59e723d2..0192021e 100644 --- a/esmf_regrid/schemes.py +++ b/esmf_regrid/schemes.py @@ -12,6 +12,7 @@ from iris.experimental.ugrid import Mesh import numpy as np +from esmf_regrid import check_method, Constants from esmf_regrid.esmf_regridder import GridInfo, RefinedGridInfo, Regridder from esmf_regrid.experimental.unstructured_regrid import MeshInfo @@ -245,7 +246,7 @@ def _regrid_along_dims(regridder, data, dims, num_out_dims, mdtol): Parameters ---------- regridder : Regridder - An instance of Regridder initialised to perfomr regridding. + An instance of Regridder initialised to perform regridding. data : array The data to be regrid. dims : tuple of int @@ -457,23 +458,21 @@ def copy_coords(src_coords, add_method): def _make_gridinfo(cube, method, resolution, mask): + method = check_method(method) if resolution is not None: if not (isinstance(resolution, int) and resolution > 0): raise ValueError("resolution must be a positive integer.") - if method != "conservative": + if method != Constants.Method.CONSERVATIVE: raise ValueError("resolution can only be set for conservative regridding.") - if method == "conservative": + if method == Constants.Method.CONSERVATIVE: center = False - elif method in ("bilinear", "nearest"): + elif method in (Constants.Method.NEAREST, Constants.Method.BILINEAR): center = True - else: - raise NotImplementedError( - f"method must be either 'bilinear', 'conservative' or 'nearest', got '{method}'." - ) return _cube_to_GridInfo(cube, center=center, resolution=resolution, mask=mask) def _make_meshinfo(cube_or_mesh, method, mask, src_or_tgt, location=None): + method = check_method(method) if isinstance(cube_or_mesh, Mesh): mesh = cube_or_mesh else: @@ -481,27 +480,23 @@ def _make_meshinfo(cube_or_mesh, method, mask, src_or_tgt, location=None): location = cube_or_mesh.location if mesh is None: raise ValueError(f"The {src_or_tgt} cube is not defined on a mesh.") - if method == "conservative": + if method == Constants.Method.CONSERVATIVE: if location != "face": raise ValueError( - f"Conservative regridding requires a {src_or_tgt} cube located on " + f"{method.name.lower()} regridding requires a {src_or_tgt} cube located on " f"the face of a cube, target cube had the {location} location." ) - elif method in ("bilinear", "nearest"): + elif method in (Constants.Method.NEAREST, Constants.Method.BILINEAR): if location not in ["face", "node"]: raise ValueError( - f"{method} regridding requires a {src_or_tgt} cube with a node " + f"{method.name.lower()} regridding requires a {src_or_tgt} cube with a node " f"or face location, target cube had the {location} location." ) if location == "face" and None in mesh.face_coords: raise ValueError( - f"{method} regridding requires a {src_or_tgt} cube on a face" + f"{method.name.lower()} regridding requires a {src_or_tgt} cube on a face" f"location to have a face center." ) - else: - raise NotImplementedError( - f"method must be either 'bilinear', 'conservative' or 'nearest', got '{method}'." - ) return _mesh_to_MeshInfo(mesh, location, mask=mask) @@ -878,7 +873,7 @@ def regrid_rectilinear_to_rectilinear( src_cube, grid_cube, mdtol=0, - method="conservative", + method=Constants.Method.CONSERVATIVE, src_resolution=None, tgt_resolution=None, ): @@ -907,11 +902,8 @@ def regrid_rectilinear_to_rectilinear( target cell. ``mdtol=0`` means no missing data is tolerated while ``mdtol=1`` will mean the resulting element will be masked if and only if all the overlapping cells of ``src_cube`` are masked. - method : str, default="conservative" - Either "conservative", "bilinear" or "nearest". Corresponds to the :mod:`esmpy` methods - :attr:`~esmpy.api.constants.RegridMethod.CONSERVE`, - :attr:`~esmpy.api.constants.RegridMethod.BILINEAR` or - :attr:`~esmpy.api.constants.RegridMethod.NEAREST_STOD` used to calculate weights. + method : :class:`Constants.Method`, , default=Constants.Method.CONSERVATIVE. + The method to be used to calculate weights. src_resolution, tgt_resolution : int, optional If present, represents the amount of latitude slices per source/target cell given to ESMF for calculation. @@ -1279,11 +1271,8 @@ def __init__( The rectilinear :class:`~iris.cube.Cube` providing the source grid. tgt : :class:`iris.cube.Cube` or :class:`iris.experimental.ugrid.Mesh` The rectilinear :class:`~iris.cube.Cube` providing the target grid. - method : str - Either "conservative", "bilinear" or "nearest". Corresponds to the :mod:`esmpy` methods - :attr:`~esmpy.api.constants.RegridMethod.CONSERVE`, - :attr:`~esmpy.api.constants.RegridMethod.BILINEAR` or - :attr:`~esmpy.api.constants.RegridMethod.NEAREST_STOD` used to calculate weights. + method : :class:`Constants.Method` + The method to be used to calculate weights. mdtol : float, default=None Tolerance of missing data. The value returned in each element of the returned array will be masked if the fraction of masked data @@ -1307,14 +1296,11 @@ def __init__( or ``tgt`` respectively are not constant over non-horizontal dimensions. """ - if method not in ["conservative", "bilinear", "nearest"]: - raise NotImplementedError( - f"method must be either 'bilinear', 'conservative' or 'nearest', got '{method}'." - ) + method = check_method(method) if mdtol is None: - if method == "conservative": + if method == Constants.Method.CONSERVATIVE: mdtol = 1 - elif method in ("bilinear", "nearest"): + elif method in (Constants.Method.BILINEAR, Constants.Method.NEAREST): mdtol = 0 if not (0 <= mdtol <= 1): msg = "Value for mdtol must be in range 0 - 1, got {}." @@ -1508,7 +1494,7 @@ def __init__( super().__init__( src, tgt, - "conservative", + Constants.Method.CONSERVATIVE, mdtol=mdtol, precomputed_weights=precomputed_weights, tgt_location="face", @@ -1567,7 +1553,7 @@ def __init__( super().__init__( src, tgt, - "bilinear", + Constants.Method.BILINEAR, mdtol=mdtol, precomputed_weights=precomputed_weights, use_src_mask=use_src_mask, @@ -1620,7 +1606,7 @@ def __init__( super().__init__( src, tgt, - "nearest", + Constants.Method.NEAREST, mdtol=0, precomputed_weights=precomputed_weights, use_src_mask=use_src_mask, diff --git a/esmf_regrid/tests/integration/esmf_regridder/test_Regridder.py b/esmf_regrid/tests/integration/esmf_regridder/test_Regridder.py index 437c813f..0d2c8df7 100644 --- a/esmf_regrid/tests/integration/esmf_regridder/test_Regridder.py +++ b/esmf_regrid/tests/integration/esmf_regridder/test_Regridder.py @@ -3,6 +3,7 @@ import numpy as np from numpy import ma +from esmf_regrid import Constants from esmf_regrid import esmpy from esmf_regrid.esmf_regridder import GridInfo, Regridder from esmf_regrid.tests import make_grid_args @@ -60,10 +61,10 @@ def test_esmpy_normalisation(): tgt_field_dstarea = esmpy_dstarea_regridder(src_field, tgt_field) result_esmpy_dstarea = tgt_field_dstarea.data - result_dstarea = regridder.regrid(src_array, norm_type="dstarea") + result_dstarea = regridder.regrid(src_array, norm_type=Constants.NormType.DSTAREA) assert ma.allclose(result_esmpy_dstarea, result_dstarea) tgt_field_fracarea = esmpy_fracarea_regridder(src_field, tgt_field) result_esmpy_fracarea = tgt_field_fracarea.data - result_fracarea = regridder.regrid(src_array, norm_type="fracarea") + result_fracarea = regridder.regrid(src_array, norm_type=Constants.NormType.FRACAREA) assert ma.allclose(result_esmpy_fracarea, result_fracarea) diff --git a/esmf_regrid/tests/unit/esmf_regridder/test_Constants.py b/esmf_regrid/tests/unit/esmf_regridder/test_Constants.py new file mode 100644 index 00000000..3be4dbee --- /dev/null +++ b/esmf_regrid/tests/unit/esmf_regridder/test_Constants.py @@ -0,0 +1,52 @@ +"""Unit tests for :class:`esmf_regrid.constants.Constants`, and associated checkers.""" + +import pytest + +from esmf_regrid import check_method, check_norm, Constants + + +@pytest.mark.parametrize( + "method", + [ + ["conservative", Constants.Method.CONSERVATIVE], + ["bilinear", Constants.Method.BILINEAR], + ["nearest", Constants.Method.NEAREST], + ], +) +def test_check_method_validates(method): + """Tests that `check_method()` converts strings to enum.""" + # with original text-input behaviour + assert check_method(method[0]) == method[1] + # with updated enum-input behaviour + assert check_method(method[1]) == method[1] + + +def test_invalid_method(): + """Ensures invalid methods raise an appropriate error, via string and enum.""" + with pytest.raises(ValueError): + _ = check_method("other") + with pytest.raises(AttributeError): + _ = check_method(Constants.Method.OTHER) + + +@pytest.mark.parametrize( + "norm", + [ + ["fracarea", Constants.NormType.FRACAREA], + ["dstarea", Constants.NormType.DSTAREA], + ], +) +def test_check_norm_validates(norm): + """Tests that `check_norm()` converts strings to enum.""" + # with original text-input behaviour + assert check_norm(norm[0]) == norm[1] + # with updated enum-input behaviour + assert check_norm(norm[1]) == norm[1] + + +def test_invalid_norm(): + """Ensures invalid norms raise an appropriate error, via string and enum.""" + with pytest.raises(ValueError): + _ = check_norm("other") + with pytest.raises(AttributeError): + _ = check_norm(Constants.Norm.OTHER) diff --git a/esmf_regrid/tests/unit/esmf_regridder/test_Regridder.py b/esmf_regrid/tests/unit/esmf_regridder/test_Regridder.py index 8f16753b..c29d6df8 100644 --- a/esmf_regrid/tests/unit/esmf_regridder/test_Regridder.py +++ b/esmf_regrid/tests/unit/esmf_regridder/test_Regridder.py @@ -5,6 +5,7 @@ import pytest import scipy.sparse +from esmf_regrid import Constants from esmf_regrid.esmf_regridder import GridInfo, Regridder from esmf_regrid.tests import make_grid_args @@ -117,7 +118,7 @@ def test_Regridder_regrid(): assert ma.allclose(result_half_mdtol, expected_half_mdtol) # Regrid with norm_type="dstarea". - result_dstarea = rg.regrid(src_masked, norm_type="dstarea") + result_dstarea = rg.regrid(src_masked, norm_type=Constants.NormType.DSTAREA) expected_dstarea = ma.array( [ [0.3325805974343169, 0.4999999999999999, 0.6674194025656823], diff --git a/esmf_regrid/tests/unit/experimental/io/test_round_tripping.py b/esmf_regrid/tests/unit/experimental/io/test_round_tripping.py index 15727706..c16adcef 100644 --- a/esmf_regrid/tests/unit/experimental/io/test_round_tripping.py +++ b/esmf_regrid/tests/unit/experimental/io/test_round_tripping.py @@ -4,6 +4,7 @@ from numpy import ma import pytest +from esmf_regrid import Constants from esmf_regrid.experimental.io import load_regridder, save_regridder from esmf_regrid.experimental.unstructured_scheme import ( GridToMeshESMFRegridder, @@ -19,7 +20,7 @@ def _make_grid_to_mesh_regridder( - method="conservative", + method=Constants.Method.CONSERVATIVE, resolution=None, grid_dims=1, circular=True, @@ -40,7 +41,7 @@ def _make_grid_to_mesh_regridder( src = _curvilinear_cube(src_lons, src_lats, lon_bounds, lat_bounds) src.coord("longitude").var_name = "longitude" src.coord("latitude").var_name = "latitude" - if method == "bilinear": + if method == Constants.Method.BILINEAR: location = "node" else: location = "face" @@ -72,7 +73,11 @@ def _make_grid_to_mesh_regridder( def _make_mesh_to_grid_regridder( - method="conservative", resolution=None, grid_dims=1, circular=True, masks=False + method=Constants.Method.CONSERVATIVE, + resolution=None, + grid_dims=1, + circular=True, + masks=False, ): src_lons = 3 src_lats = 4 @@ -86,7 +91,7 @@ def _make_mesh_to_grid_regridder( tgt = _curvilinear_cube(tgt_lons, tgt_lats, lon_bounds, lat_bounds) tgt.coord("longitude").var_name = "longitude" tgt.coord("latitude").var_name = "latitude" - if method == "bilinear": + if method == Constants.Method.BILINEAR: location = "node" else: location = "face" @@ -117,7 +122,14 @@ def _make_mesh_to_grid_regridder( return rg, src -@pytest.mark.parametrize("method", ["conservative", "bilinear", "nearest"]) +@pytest.mark.parametrize( + "method", + [ + Constants.Method.CONSERVATIVE, + Constants.Method.BILINEAR, + Constants.Method.NEAREST, + ], +) def test_GridToMeshESMFRegridder_round_trip(tmp_path, method): """Test save/load round tripping for `GridToMeshESMFRegridder`.""" original_rg, src = _make_grid_to_mesh_regridder(method=method, circular=True) @@ -157,7 +169,7 @@ def test_GridToMeshESMFRegridder_round_trip(tmp_path, method): == loaded_rg.regridder.esmf_regrid_version ) - if method == "conservative": + if method == Constants.Method.CONSERVATIVE: # Ensure resolution is equal. assert original_rg.resolution == loaded_rg.resolution original_res_rg, _ = _make_grid_to_mesh_regridder(method=method, resolution=8) @@ -225,7 +237,14 @@ def test_MeshESMFRegridder_masked_round_trip(tmp_path, rg_maker): assert np.array_equal(loaded_rg.tgt_mask, original_rg.tgt_mask) -@pytest.mark.parametrize("method", ["conservative", "bilinear", "nearest"]) +@pytest.mark.parametrize( + "method", + [ + Constants.Method.CONSERVATIVE, + Constants.Method.BILINEAR, + Constants.Method.NEAREST, + ], +) def test_MeshToGridESMFRegridder_round_trip(tmp_path, method): """Test save/load round tripping for `MeshToGridESMFRegridder`.""" original_rg, src = _make_mesh_to_grid_regridder(method=method, circular=True) @@ -264,7 +283,7 @@ def test_MeshToGridESMFRegridder_round_trip(tmp_path, method): == loaded_rg.regridder.esmf_regrid_version ) - if method == "conservative": + if method == Constants.Method.CONSERVATIVE: # Ensure resolution is equal. assert original_rg.resolution == loaded_rg.resolution original_res_rg, _ = _make_mesh_to_grid_regridder(method=method, resolution=8) diff --git a/esmf_regrid/tests/unit/experimental/unstructured_regrid/test_MeshInfo.py b/esmf_regrid/tests/unit/experimental/unstructured_regrid/test_MeshInfo.py index 7c12e2ca..fe2ced0b 100644 --- a/esmf_regrid/tests/unit/experimental/unstructured_regrid/test_MeshInfo.py +++ b/esmf_regrid/tests/unit/experimental/unstructured_regrid/test_MeshInfo.py @@ -3,6 +3,7 @@ import numpy as np from numpy import ma +from esmf_regrid import Constants from esmf_regrid.esmf_regridder import GridInfo, Regridder from esmf_regrid.experimental.unstructured_regrid import MeshInfo from esmf_regrid.tests import get_result_path, make_grid_args @@ -111,7 +112,9 @@ def test_regrid_bilinear_with_mesh(): grid_args = [ar * 2 for ar in make_grid_args(2, 3)] grid = GridInfo(*grid_args, center=True) - mesh_to_grid_regridder = Regridder(node_mesh, grid, method="bilinear") + mesh_to_grid_regridder = Regridder( + node_mesh, grid, method=Constants.Method.BILINEAR + ) mesh_input = np.arange(5) grid_output = mesh_to_grid_regridder.regrid(mesh_input) # For a flat surface, we would expect the fractional part of these values @@ -132,13 +135,17 @@ def test_regrid_bilinear_with_mesh(): expected_grid_output = ma.array(expected_grid_output, mask=expected_grid_mask) assert ma.allclose(expected_grid_output, grid_output) - grid_to_mesh_regridder = Regridder(grid, node_mesh, method="bilinear") + grid_to_mesh_regridder = Regridder( + grid, node_mesh, method=Constants.Method.BILINEAR + ) grid_input = np.array([[0, 0], [1, 0], [2, 1]]) mesh_output = grid_to_mesh_regridder.regrid(grid_input) expected_mesh_output = ma.array([0.0, 1.5, 0.0, 0.5, -1], mask=[0, 0, 0, 0, 1]) assert ma.allclose(expected_mesh_output, mesh_output) - grid_to_face_mesh_regridder = Regridder(grid, face_mesh, method="bilinear") + grid_to_face_mesh_regridder = Regridder( + grid, face_mesh, method=Constants.Method.BILINEAR + ) grid_input_2 = np.array([[0, 0], [1, 0], [4, 1]]) face_mesh_output = grid_to_face_mesh_regridder.regrid(grid_input_2) expected_face_mesh_output = np.array([0.0, 1.4888258584989558]) diff --git a/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_GridToMeshESMFRegridder.py b/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_GridToMeshESMFRegridder.py index 03978e68..c3b11581 100644 --- a/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_GridToMeshESMFRegridder.py +++ b/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_GridToMeshESMFRegridder.py @@ -7,6 +7,7 @@ from numpy import ma import pytest +from esmf_regrid import Constants from esmf_regrid.experimental.unstructured_scheme import ( GridToMeshESMFRegridder, ) @@ -75,12 +76,14 @@ def test_flat_cubes(): @pytest.mark.parametrize("nsi", [0, 1]) -@pytest.mark.parametrize("method", ["bilinear", "nearest"]) +@pytest.mark.parametrize( + "method", [Constants.Method.BILINEAR, Constants.Method.NEAREST] +) def test_node_friendly_methods(method, nsi): """ Basic test for :class:`esmf_regrid.experimental.unstructured_scheme.GridToMeshESMFRegridder`. - Tests with method="bilinear" and method="nearest". + Tests with method=Constants.Method.BILINEAR and method=Constants.Method.NEAREST. """ n_lons = 6 n_lats = 5 @@ -200,24 +203,24 @@ def test_invalid_method(): node_tgt = _gridlike_mesh_cube(n_lons, n_lats, location="node") src = _grid_cube(n_lons, n_lats, lon_bounds, lat_bounds, circular=True) - with pytest.raises(NotImplementedError): + with pytest.raises(ValueError): _ = GridToMeshESMFRegridder(src, face_tgt, method="other") with pytest.raises(ValueError) as excinfo: - _ = GridToMeshESMFRegridder(src, node_tgt, method="conservative") + _ = GridToMeshESMFRegridder(src, node_tgt, method=Constants.Method.CONSERVATIVE) expected_message = ( - "Conservative regridding requires a target cube located on " + "conservative regridding requires a target cube located on " "the face of a cube, target cube had the node location." ) assert expected_message in str(excinfo.value) with pytest.raises(ValueError) as excinfo: - _ = GridToMeshESMFRegridder(src, edge_tgt, method="bilinear") + _ = GridToMeshESMFRegridder(src, edge_tgt, method=Constants.Method.BILINEAR) expected_message = ( "bilinear regridding requires a target cube with a node " "or face location, target cube had the edge location." ) assert expected_message in str(excinfo.value) with pytest.raises(ValueError) as excinfo: - _ = GridToMeshESMFRegridder(src, edge_tgt, method="nearest") + _ = GridToMeshESMFRegridder(src, edge_tgt, method=Constants.Method.NEAREST) expected_message = ( "nearest regridding requires a target cube with a node " "or face location, target cube had the edge location." @@ -239,12 +242,16 @@ def test_invalid_resolution(): src = _grid_cube(n_lons, n_lats, lon_bounds, lat_bounds, circular=True) with pytest.raises(ValueError) as excinfo: - _ = GridToMeshESMFRegridder(src, tgt, method="conservative", src_resolution=-1) + _ = GridToMeshESMFRegridder( + src, tgt, method=Constants.Method.CONSERVATIVE, src_resolution=-1 + ) expected_message = "resolution must be a positive integer." assert expected_message in str(excinfo.value) with pytest.raises(ValueError) as excinfo: - _ = GridToMeshESMFRegridder(src, tgt, method="bilinear", src_resolution=4) + _ = GridToMeshESMFRegridder( + src, tgt, method=Constants.Method.BILINEAR, src_resolution=4 + ) expected_message = "resolution can only be set for conservative regridding." assert expected_message in str(excinfo.value) @@ -262,9 +269,9 @@ def test_default_mdtol(): tgt = _gridlike_mesh_cube(n_lons, n_lats) src = _grid_cube(n_lons, n_lats, lon_bounds, lat_bounds, circular=True) - rg_con = GridToMeshESMFRegridder(src, tgt, method="conservative") + rg_con = GridToMeshESMFRegridder(src, tgt, method=Constants.Method.CONSERVATIVE) assert rg_con.mdtol == 1 - rg_bi = GridToMeshESMFRegridder(src, tgt, method="bilinear") + rg_bi = GridToMeshESMFRegridder(src, tgt, method=Constants.Method.BILINEAR) assert rg_bi.mdtol == 0 diff --git a/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_MeshToGridESMFRegridder.py b/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_MeshToGridESMFRegridder.py index 246dea3a..563759bf 100644 --- a/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_MeshToGridESMFRegridder.py +++ b/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_MeshToGridESMFRegridder.py @@ -6,6 +6,7 @@ import numpy as np import pytest +from esmf_regrid import Constants from esmf_regrid.experimental.unstructured_scheme import ( MeshToGridESMFRegridder, ) @@ -69,12 +70,14 @@ def test_flat_cubes(): @pytest.mark.parametrize("nsi", [0, 1]) -@pytest.mark.parametrize("method", ["bilinear", "nearest"]) +@pytest.mark.parametrize( + "method", [Constants.Method.BILINEAR, Constants.Method.NEAREST] +) def test_node_friendly_methods(method, nsi): """ Basic test for :class:`esmf_regrid.experimental.unstructured_scheme.MeshToGridESMFRegridder`. - Tests with method="bilinear" and method="nearest". + Tests with method=Constants.Method.BILINEAR and method=Constants.Method.NEAREST. """ n_lons = 6 n_lats = 5 @@ -92,6 +95,7 @@ def test_node_friendly_methods(method, nsi): face_regridder = MeshToGridESMFRegridder(face_src, tgt, method=method) node_regridder = MeshToGridESMFRegridder(node_src, tgt, method=method) + print(node_regridder.regridder.method) assert face_regridder.regridder.method == method assert node_regridder.regridder.method == method @@ -195,24 +199,24 @@ def test_invalid_method(): node_src = _gridlike_mesh_cube(n_lons, n_lats, location="node") tgt = _grid_cube(n_lons, n_lats, lon_bounds, lat_bounds, circular=True) - with pytest.raises(NotImplementedError): - _ = MeshToGridESMFRegridder(face_src, tgt, method="other") + with pytest.raises(AttributeError): + _ = MeshToGridESMFRegridder(face_src, tgt, method=Constants.Method.OTHER) with pytest.raises(ValueError) as excinfo: - _ = MeshToGridESMFRegridder(node_src, tgt, method="conservative") + _ = MeshToGridESMFRegridder(node_src, tgt, method=Constants.Method.CONSERVATIVE) expected_message = ( - "Conservative regridding requires a source cube located on " + "conservative regridding requires a source cube located on " "the face of a cube, target cube had the node location." ) assert expected_message in str(excinfo.value) with pytest.raises(ValueError) as excinfo: - _ = MeshToGridESMFRegridder(edge_src, tgt, method="bilinear") + _ = MeshToGridESMFRegridder(edge_src, tgt, method=Constants.Method.BILINEAR) expected_message = ( "bilinear regridding requires a source cube with a node " "or face location, target cube had the edge location." ) assert expected_message in str(excinfo.value) with pytest.raises(ValueError) as excinfo: - _ = MeshToGridESMFRegridder(edge_src, tgt, method="nearest") + _ = MeshToGridESMFRegridder(edge_src, tgt, method=Constants.Method.NEAREST) expected_message = ( "nearest regridding requires a source cube with a node " "or face location, target cube had the edge location." @@ -234,12 +238,16 @@ def test_invalid_resolution(): tgt = _grid_cube(n_lons, n_lats, lon_bounds, lat_bounds, circular=True) with pytest.raises(ValueError) as excinfo: - _ = MeshToGridESMFRegridder(src, tgt, method="conservative", tgt_resolution=-1) + _ = MeshToGridESMFRegridder( + src, tgt, method=Constants.Method.CONSERVATIVE, tgt_resolution=-1 + ) expected_message = "resolution must be a positive integer." assert expected_message in str(excinfo.value) with pytest.raises(ValueError) as excinfo: - _ = MeshToGridESMFRegridder(src, tgt, method="bilinear", tgt_resolution=4) + _ = MeshToGridESMFRegridder( + src, tgt, method=Constants.Method.BILINEAR, tgt_resolution=4 + ) expected_message = "resolution can only be set for conservative regridding." assert expected_message in str(excinfo.value) @@ -257,9 +265,9 @@ def test_default_mdtol(): src = _gridlike_mesh_cube(n_lons, n_lats) tgt = _grid_cube(n_lons, n_lats, lon_bounds, lat_bounds, circular=True) - rg_con = MeshToGridESMFRegridder(src, tgt, method="conservative") + rg_con = MeshToGridESMFRegridder(src, tgt, method=Constants.Method.CONSERVATIVE) assert rg_con.mdtol == 1 - rg_bi = MeshToGridESMFRegridder(src, tgt, method="bilinear") + rg_bi = MeshToGridESMFRegridder(src, tgt, method=Constants.Method.BILINEAR) assert rg_bi.mdtol == 0 diff --git a/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_rectilinear_to_unstructured.py b/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_rectilinear_to_unstructured.py index 2a666e4c..e408a39a 100644 --- a/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_rectilinear_to_unstructured.py +++ b/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_rectilinear_to_unstructured.py @@ -6,6 +6,7 @@ from numpy import ma import pytest +from esmf_regrid import Constants from esmf_regrid.experimental.unstructured_scheme import ( regrid_rectilinear_to_unstructured, ) @@ -70,7 +71,9 @@ def test_flat_cubes(): assert expected_cube == result_transposed -@pytest.mark.parametrize("method", ("bilinear", "nearest")) +@pytest.mark.parametrize( + "method", (Constants.Method.BILINEAR, Constants.Method.NEAREST) +) def test_node_friendly_methods(method): """ Basic test for :func:`esmf_regrid.experimental.unstructured_scheme.regrid_rectilinear_to_unstructured`. @@ -118,25 +121,33 @@ def test_invalid_args(): src = _grid_cube(n_lons, n_lats, lon_bounds, lat_bounds, circular=True) with pytest.raises(ValueError): - _ = regrid_rectilinear_to_unstructured(src, src, method="bilinear") - with pytest.raises(NotImplementedError): + _ = regrid_rectilinear_to_unstructured( + src, src, method=Constants.Method.BILINEAR + ) + with pytest.raises(ValueError): _ = regrid_rectilinear_to_unstructured(src, face_tgt, method="other") with pytest.raises(ValueError) as excinfo: - _ = regrid_rectilinear_to_unstructured(src, node_tgt, method="conservative") + _ = regrid_rectilinear_to_unstructured( + src, node_tgt, method=Constants.Method.CONSERVATIVE + ) expected_message = ( - "Conservative regridding requires a target cube located on " + "conservative regridding requires a target cube located on " "the face of a cube, target cube had the node location." ) assert expected_message in str(excinfo.value) with pytest.raises(ValueError) as excinfo: - _ = regrid_rectilinear_to_unstructured(src, edge_tgt, method="bilinear") + _ = regrid_rectilinear_to_unstructured( + src, edge_tgt, method=Constants.Method.BILINEAR + ) expected_message = ( "bilinear regridding requires a target cube with a node " "or face location, target cube had the edge location." ) assert expected_message in str(excinfo.value) with pytest.raises(ValueError) as excinfo: - _ = regrid_rectilinear_to_unstructured(src, edge_tgt, method="nearest") + _ = regrid_rectilinear_to_unstructured( + src, edge_tgt, method=Constants.Method.NEAREST + ) expected_message = ( "nearest regridding requires a target cube with a node " "or face location, target cube had the edge location." diff --git a/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_unstructured_to_rectilinear.py b/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_unstructured_to_rectilinear.py index 5c764398..36f94d44 100644 --- a/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_unstructured_to_rectilinear.py +++ b/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_unstructured_to_rectilinear.py @@ -5,6 +5,7 @@ import numpy as np import pytest +from esmf_regrid import Constants from esmf_regrid.experimental.unstructured_scheme import ( regrid_unstructured_to_rectilinear, ) @@ -64,7 +65,9 @@ def test_flat_cubes(): assert expected_cube == result -@pytest.mark.parametrize("method", ("bilinear", "nearest")) +@pytest.mark.parametrize( + "method", (Constants.Method.BILINEAR, Constants.Method.NEAREST) +) def test_node_friendly_methods(method): """ Basic test for :func:`esmf_regrid.experimental.unstructured_scheme.regrid_unstructured_to_rectilinear`. @@ -112,25 +115,33 @@ def test_invalid_args(): tgt = _grid_cube(n_lons, n_lats, lon_bounds, lat_bounds, circular=True) with pytest.raises(ValueError): - _ = regrid_unstructured_to_rectilinear(tgt, tgt, method="bilinear") - with pytest.raises(NotImplementedError): + _ = regrid_unstructured_to_rectilinear( + tgt, tgt, method=Constants.Method.BILINEAR + ) + with pytest.raises(ValueError): _ = regrid_unstructured_to_rectilinear(face_src, tgt, method="other") with pytest.raises(ValueError) as excinfo: - _ = regrid_unstructured_to_rectilinear(node_src, tgt, method="conservative") + _ = regrid_unstructured_to_rectilinear( + node_src, tgt, method=Constants.Method.CONSERVATIVE + ) expected_message = ( - "Conservative regridding requires a source cube located on " + "conservative regridding requires a source cube located on " "the face of a cube, target cube had the node location." ) assert expected_message in str(excinfo.value) with pytest.raises(ValueError) as excinfo: - _ = regrid_unstructured_to_rectilinear(edge_src, tgt, method="bilinear") + _ = regrid_unstructured_to_rectilinear( + edge_src, tgt, method=Constants.Method.BILINEAR + ) expected_message = ( "bilinear regridding requires a source cube with a node " "or face location, target cube had the edge location." ) assert expected_message in str(excinfo.value) with pytest.raises(ValueError) as excinfo: - _ = regrid_unstructured_to_rectilinear(edge_src, tgt, method="nearest") + _ = regrid_unstructured_to_rectilinear( + edge_src, tgt, method=Constants.Method.NEAREST + ) expected_message = ( "nearest regridding requires a source cube with a node " "or face location, target cube had the edge location." diff --git a/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_unstructured_to_unstructured.py b/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_unstructured_to_unstructured.py index 8be55fe9..1a596aec 100644 --- a/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_unstructured_to_unstructured.py +++ b/esmf_regrid/tests/unit/experimental/unstructured_scheme/test_regrid_unstructured_to_unstructured.py @@ -102,12 +102,12 @@ def test_invalid_args(): face_src = _gridlike_mesh_cube(n_lons, n_lats, location="face") tgt = _gridlike_mesh_cube(n_lons, n_lats) - with pytest.raises(NotImplementedError): + with pytest.raises(ValueError): _ = regrid_unstructured_to_unstructured(face_src, tgt, method="other") with pytest.raises(ValueError) as excinfo: _ = regrid_unstructured_to_unstructured(node_src, tgt, method="conservative") expected_message = ( - "Conservative regridding requires a source cube located on " + "conservative regridding requires a source cube located on " "the face of a cube, target cube had the node location." ) assert expected_message in str(excinfo.value) diff --git a/esmf_regrid/tests/unit/schemes/test__ESMFRegridder.py b/esmf_regrid/tests/unit/schemes/test__ESMFRegridder.py index 52796157..b5c103fa 100644 --- a/esmf_regrid/tests/unit/schemes/test__ESMFRegridder.py +++ b/esmf_regrid/tests/unit/schemes/test__ESMFRegridder.py @@ -20,5 +20,5 @@ def test_invalid_method(): lat_bounds = (-90, 90) src = tgt = _grid_cube(n_lons, n_lats, lon_bounds, lat_bounds, circular=True) - with pytest.raises(NotImplementedError): + with pytest.raises(ValueError): _ = _ESMFRegridder(src, tgt, method="other") diff --git a/esmf_regrid/tests/unit/schemes/test__regrid_unstructured_to_rectilinear__prepare.py b/esmf_regrid/tests/unit/schemes/test__regrid_unstructured_to_rectilinear__prepare.py index a14fcfa1..bfc52410 100644 --- a/esmf_regrid/tests/unit/schemes/test__regrid_unstructured_to_rectilinear__prepare.py +++ b/esmf_regrid/tests/unit/schemes/test__regrid_unstructured_to_rectilinear__prepare.py @@ -4,6 +4,8 @@ from iris.cube import Cube import numpy as np + +from esmf_regrid import Constants from esmf_regrid.esmf_regridder import GridInfo from esmf_regrid.experimental.unstructured_regrid import MeshInfo from esmf_regrid.schemes import ( @@ -61,7 +63,7 @@ def test_flat_cubes(): lat_bounds = (-90, 90) tgt = _grid_cube(n_lons, n_lats, lon_bounds, lat_bounds, circular=True) regrid_info = _regrid_unstructured_to_rectilinear__prepare( - src, tgt, method="conservative" + src, tgt, method=Constants.Method.CONSERVATIVE ) (mesh_dim,), (grid_x, grid_y), regridder = regrid_info From d1f1c8ffb83107fb223688f3e059c624f274d07c Mon Sep 17 00:00:00 2001 From: Bill Little Date: Mon, 4 Dec 2023 12:37:15 +0000 Subject: [PATCH 11/29] Add CITATION.cff (#319) --- .github/workflows/ci-citation.yml | 33 +++++++++++++++++++++++++++++++ CITATION.cff | 12 +++++++++++ MANIFEST.in | 3 ++- README.md | 1 + 4 files changed, 48 insertions(+), 1 deletion(-) create mode 100644 .github/workflows/ci-citation.yml create mode 100644 CITATION.cff diff --git a/.github/workflows/ci-citation.yml b/.github/workflows/ci-citation.yml new file mode 100644 index 00000000..5417d800 --- /dev/null +++ b/.github/workflows/ci-citation.yml @@ -0,0 +1,33 @@ +name: ci-citation + +on: + pull_request: + paths: + - "CITATION.cff" + + push: + paths: + - "CITATION.cff" + + workflow_dispatch: + +concurrency: + group: ${{ github.workflow }}-${{ github.ref }} + cancel-in-progress: true + +permissions: + contents: read + +jobs: + validate: + name: "validate" + runs-on: ubuntu-latest + steps: + - uses: actions/checkout@v4 + with: + fetch-depth: 0 + + - name: "check CITATION.cff" + uses: citation-file-format/cffconvert-github-action@2.0.0 + with: + args: "--validate" diff --git a/CITATION.cff b/CITATION.cff new file mode 100644 index 00000000..1a44df63 --- /dev/null +++ b/CITATION.cff @@ -0,0 +1,12 @@ +cff-version: 1.2.0 +message: "If you use this software, please cite it as below." +authors: +- family-names: "Worsley" + given-names: "Stephen" + orcid: "https://orcid.org/0009-0008-1704-8445" +title: "iris-esmf-regrid" +abstract: "A collection of structured and unstructured ESMF regridding schemes for Iris" +repository-code: "https://github.com/SciTools-incubator/iris-esmf-regrid" +license: "BSD-3-Clause" +license-url: "https://spdx.org/licenses/BSD-3-Clause.html" +type: "software" diff --git a/MANIFEST.in b/MANIFEST.in index 96bb2586..808a717b 100644 --- a/MANIFEST.in +++ b/MANIFEST.in @@ -6,9 +6,10 @@ exclude .gitignore exclude .pre-commit-config.yaml exclude .readthedocs.yml include CHANGELOG.md +include CITATION.cff prune benchmarks exclude codecov.yml prune docs recursive-include esmf_regrid *.py *.txt exclude noxfile.py -prune requirements \ No newline at end of file +prune requirements diff --git a/README.md b/README.md index eef16547..f92a5c45 100644 --- a/README.md +++ b/README.md @@ -2,6 +2,7 @@ [![Build Status](https://api.cirrus-ci.com/github/SciTools-incubator/iris-esmf-regrid.svg)](https://cirrus-ci.com/github/SciTools-incubator/iris-esmf-regrid) [![Documentation Status](https://readthedocs.org/projects/iris-esmf-regrid/badge/?version=latest)](https://iris-esmf-regrid.readthedocs.io/en/latest/?badge=latest) +[![ci-citation](https://github.com/SciTools-incubator/iris-esmf-regrid/actions/workflows/ci-citation.yml/badge.svg)](https://github.com/SciTools-incubator/iris-esmf-regrid/actions/workflows/ci-citation.yml) [![pre-commit.ci status](https://results.pre-commit.ci/badge/github/SciTools-incubator/iris-esmf-regrid/main.svg)](https://results.pre-commit.ci/latest/github/SciTools-incubator/iris-esmf-regrid/master) [![codecov](https://codecov.io/gh/SciTools-incubator/iris-esmf-regrid/branch/main/graph/badge.svg?token=PKBXEHOZFT)](https://codecov.io/gh/SciTools-incubator/iris-esmf-regrid) [![Code style: black](https://img.shields.io/badge/code%20style-black-000000.svg)](https://github.com/psf/black) From 8039b78a51b118fd090f69950b59738563f11a69 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Thu, 14 Dec 2023 15:49:35 +0000 Subject: [PATCH 12/29] Updated environment lockfiles (#304) Co-authored-by: stephenworsley --- requirements/locks/py310-linux-64.lock | 340 ++++++++++-------------- requirements/locks/py311-linux-64.lock | 338 ++++++++++-------------- requirements/locks/py39-linux-64.lock | 342 ++++++++++--------------- 3 files changed, 423 insertions(+), 597 deletions(-) diff --git a/requirements/locks/py310-linux-64.lock b/requirements/locks/py310-linux-64.lock index a7a0d5d9..a4452888 100644 --- a/requirements/locks/py310-linux-64.lock +++ b/requirements/locks/py310-linux-64.lock @@ -1,61 +1,50 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: a72cbf83aacbcdae34e16e21f1b295fdefd7e00189fd0aa4b556efb72db2b486 +# input_hash: 203cc0bddf1fb49f1bb157c53764e820520360830602ad6a135c27cbe63f8104 @EXPLICIT 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e8ab0ce5b7a29c77240f72031f44ed092484f9b2 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Mon, 18 Dec 2023 21:57:21 +0000 Subject: [PATCH 13/29] [pre-commit.ci] pre-commit autoupdate (#328) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/pre-commit/pre-commit-hooks: v4.4.0 → v4.5.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.4.0...v4.5.0) - [github.com/psf/black: 23.7.0 → 23.12.0](https://github.com/psf/black/compare/23.7.0...23.12.0) - [github.com/PyCQA/flake8: 6.0.0 → 6.1.0](https://github.com/PyCQA/flake8/compare/6.0.0...6.1.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> --- .pre-commit-config.yaml | 6 +++--- 1 file changed, 3 insertions(+), 3 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 18a5b085..0e95d5c5 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -2,7 +2,7 @@ # See https://pre-commit.com/hooks.html for more hooks repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: 'v4.4.0' + rev: 'v4.5.0' hooks: # Prevent giant files from being committed. - id: check-added-large-files @@ -17,14 +17,14 @@ repos: # Don't commit to master branch. - id: no-commit-to-branch - repo: https://github.com/psf/black - rev: '23.7.0' + rev: '23.12.0' hooks: - id: black # Force black to run on whole repo, using settings from pyproject.toml pass_filenames: false args: [--config=./pyproject.toml, .] - repo: https://github.com/PyCQA/flake8 - rev: '6.0.0' + rev: '6.1.0' hooks: # Run flake8. - id: flake8 From cc7b9ccaa01bcab09b49ed590a289acc7255cb06 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Wed, 24 Jan 2024 11:12:38 +0000 Subject: [PATCH 14/29] Updated environment lockfiles (#327) Co-authored-by: stephenworsley --- requirements/locks/py310-linux-64.lock | 87 +++++++++++++------------- requirements/locks/py311-linux-64.lock | 87 +++++++++++++------------- requirements/locks/py39-linux-64.lock | 87 +++++++++++++------------- 3 files changed, 132 insertions(+), 129 deletions(-) diff --git a/requirements/locks/py310-linux-64.lock b/requirements/locks/py310-linux-64.lock index a4452888..d43db996 100644 --- a/requirements/locks/py310-linux-64.lock +++ b/requirements/locks/py310-linux-64.lock @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: 203cc0bddf1fb49f1bb157c53764e820520360830602ad6a135c27cbe63f8104 +# input_hash: 9b3f84cb760433a21e3da419665d9b5958e0f79a6e2da63af997aede5dd62c52 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.11.17-hbcca054_0.conda#01ffc8d36f9eba0ce0b3c1955fa780ee @@ -11,14 +11,14 @@ 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+https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-serializinghtml-1.1.10-pyhd8ed1ab_0.conda#e507335cb4ca9cff4c3d0fa9cdab255e From 3681dd662af4bbcffb4e1b0572addf3d030346f8 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 24 Jan 2024 11:20:12 +0000 Subject: [PATCH 15/29] Bump scitools/workflows from 2023.09.0 to 2024.01.0 (#334) Bumps [scitools/workflows](https://github.com/scitools/workflows) from 2023.09.0 to 2024.01.0. - [Release notes](https://github.com/scitools/workflows/releases) - [Commits](https://github.com/scitools/workflows/compare/2023.09.0...2024.01.0) --- updated-dependencies: - dependency-name: scitools/workflows dependency-type: direct:production ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/ci-manifest.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci-manifest.yml b/.github/workflows/ci-manifest.yml index 12d0d660..e02e8563 100644 --- a/.github/workflows/ci-manifest.yml +++ b/.github/workflows/ci-manifest.yml @@ -20,4 +20,4 @@ concurrency: jobs: manifest: name: "check-manifest" - uses: scitools/workflows/.github/workflows/ci-manifest.yml@2023.09.0 + uses: scitools/workflows/.github/workflows/ci-manifest.yml@2024.01.0 From 4063435b3f078abae53df3c41412ed8cc9628954 Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Wed, 24 Jan 2024 11:31:03 +0000 Subject: [PATCH 16/29] [pre-commit.ci] pre-commit autoupdate (#330) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit updates: - [github.com/psf/black: 23.12.0 → 23.12.1](https://github.com/psf/black/compare/23.12.0...23.12.1) - [github.com/PyCQA/flake8: 6.1.0 → 7.0.0](https://github.com/PyCQA/flake8/compare/6.1.0...7.0.0) Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> --- .pre-commit-config.yaml | 4 ++-- 1 file changed, 2 insertions(+), 2 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index 0e95d5c5..a2d63c65 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -17,14 +17,14 @@ repos: # Don't commit to master branch. - id: no-commit-to-branch - repo: https://github.com/psf/black - rev: '23.12.0' + rev: '23.12.1' hooks: - id: black # Force black to run on whole repo, using settings from pyproject.toml pass_filenames: false args: [--config=./pyproject.toml, .] - repo: https://github.com/PyCQA/flake8 - rev: '6.1.0' + rev: '7.0.0' hooks: # Run flake8. - id: flake8 From 9148a8dc62238a6666468faa4de8bfba077b66fc Mon Sep 17 00:00:00 2001 From: stephenworsley <49274989+stephenworsley@users.noreply.github.com> Date: Wed, 28 Feb 2024 14:58:13 +0000 Subject: [PATCH 17/29] fix asv (#339) --- benchmarks/asv.conf.json | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/benchmarks/asv.conf.json b/benchmarks/asv.conf.json index 46023fac..782f92c0 100644 --- a/benchmarks/asv.conf.json +++ b/benchmarks/asv.conf.json @@ -6,6 +6,10 @@ "environment_type": "conda-delegated", "show_commit_url": "https://github.com/SciTools-incubator/iris-esmf-regrid/commit/", "branches": ["upstream/main"], + "build_command": [ + "python setup.py build", + "python -mpip wheel --no-deps -w {build_cache_dir} {build_dir}" + ], "benchmark_dir": "./benchmarks", "env_dir": ".asv/env", From 49a8514cbb7b372f77179347c9401ea8c4d42b65 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 28 Feb 2024 15:56:55 +0000 Subject: [PATCH 18/29] Bump actions/stale from 8.0.0 to 9.0.0 (#322) Bumps [actions/stale](https://github.com/actions/stale) from 8.0.0 to 9.0.0. - [Release notes](https://github.com/actions/stale/releases) - [Changelog](https://github.com/actions/stale/blob/main/CHANGELOG.md) - [Commits](https://github.com/actions/stale/compare/v8.0.0...v9.0.0) --- updated-dependencies: - dependency-name: actions/stale dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/stale.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/stale.yml b/.github/workflows/stale.yml index 44c55499..7dcabc69 100644 --- a/.github/workflows/stale.yml +++ b/.github/workflows/stale.yml @@ -10,7 +10,7 @@ jobs: runs-on: ubuntu-latest steps: - - uses: actions/stale@v8.0.0 + - uses: actions/stale@v9.0.0 with: repo-token: ${{ secrets.GITHUB_TOKEN }} stale-issue-message: '@SciTools-incubator/esmf-regrid-devs This issue is stale due to a lack of activity in the last 180 days. Remove stale label or comment, otherwise this issue will close automatically in 14 days time.' From e564114310f0cc7d1766d6ed07961541d00f6124 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 28 Feb 2024 16:05:41 +0000 Subject: [PATCH 19/29] Bump actions/upload-artifact from 3 to 4 (#324) * Bump actions/upload-artifact from 3 to 4 Bumps [actions/upload-artifact](https://github.com/actions/upload-artifact) from 3 to 4. - [Release notes](https://github.com/actions/upload-artifact/releases) - [Commits](https://github.com/actions/upload-artifact/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/upload-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] * Bump actions/download-artifact from 3 to 4 (#325) Bumps [actions/download-artifact](https://github.com/actions/download-artifact) from 3 to 4. - [Release notes](https://github.com/actions/download-artifact/releases) - [Commits](https://github.com/actions/download-artifact/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/download-artifact dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --------- Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/benchmark.yml | 2 +- .github/workflows/ci-wheels.yml | 10 +++++----- 2 files changed, 6 insertions(+), 6 deletions(-) diff --git a/.github/workflows/benchmark.yml b/.github/workflows/benchmark.yml index 843f9396..d41de607 100644 --- a/.github/workflows/benchmark.yml +++ b/.github/workflows/benchmark.yml @@ -78,7 +78,7 @@ jobs: nox --session="benchmarks(branch)" -- "${COMPARE}" - name: Archive ASV results - uses: actions/upload-artifact@v3 + uses: actions/upload-artifact@v4 with: name: asv-report path: | diff --git a/.github/workflows/ci-wheels.yml b/.github/workflows/ci-wheels.yml index cbc3f0d8..22bdeaa5 100644 --- a/.github/workflows/ci-wheels.yml +++ b/.github/workflows/ci-wheels.yml @@ -46,7 +46,7 @@ jobs: run: | ls -l ${{ github.workspace }}/dist - - uses: actions/upload-artifact@v3 + - uses: actions/upload-artifact@v4 with: name: pypi-artifacts path: ${{ github.workspace }}/dist @@ -76,7 +76,7 @@ jobs: with: fetch-depth: 0 - - uses: actions/download-artifact@v3 + - uses: actions/download-artifact@v4 with: name: pypi-artifacts path: ${{ github.workspace }}/dist @@ -105,7 +105,7 @@ jobs: name: "show artifacts" runs-on: ubuntu-latest steps: - - uses: actions/download-artifact@v3 + - uses: actions/download-artifact@v4 with: name: pypi-artifacts path: ${{ github.workspace }}/dist @@ -122,7 +122,7 @@ jobs: # and check for the SciTools repo if: github.event_name == 'push' && github.event.ref == 'refs/heads/main' && github.repository_owner == 'SciTools-incubator' steps: - - uses: actions/download-artifact@v3 + - uses: actions/download-artifact@v4 with: name: pypi-artifacts path: ${{ github.workspace }}/dist @@ -142,7 +142,7 @@ jobs: # upload to PyPI for every tag starting with 'v' if: github.event_name == 'push' && startsWith(github.event.ref, 'refs/tags/v') && github.repository_owner == 'SciTools-incubator' steps: - - uses: actions/download-artifact@v3 + - uses: actions/download-artifact@v4 with: name: pypi-artifacts path: ${{ github.workspace }}/dist From 0586677020d1e2ab1ccbb1132eda2c2b6da97c1f Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Wed, 28 Feb 2024 16:06:13 +0000 Subject: [PATCH 20/29] Bump actions/cache from 3 to 4 (#333) Bumps [actions/cache](https://github.com/actions/cache) from 3 to 4. - [Release notes](https://github.com/actions/cache/releases) - [Changelog](https://github.com/actions/cache/blob/main/RELEASES.md) - [Commits](https://github.com/actions/cache/compare/v3...v4) --- updated-dependencies: - dependency-name: actions/cache dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/benchmark.yml | 2 +- .github/workflows/ci-tests.yml | 4 ++-- .github/workflows/ci-wheels.yml | 2 +- 3 files changed, 4 insertions(+), 4 deletions(-) diff --git a/.github/workflows/benchmark.yml b/.github/workflows/benchmark.yml index d41de607..9f00653a 100644 --- a/.github/workflows/benchmark.yml +++ b/.github/workflows/benchmark.yml @@ -62,7 +62,7 @@ jobs: pip install asv nox - name: Cache environment directories - uses: actions/cache@v3 + uses: actions/cache@v4 with: path: | .nox diff --git a/.github/workflows/ci-tests.yml b/.github/workflows/ci-tests.yml index bc9e62d6..6998475a 100644 --- a/.github/workflows/ci-tests.yml +++ b/.github/workflows/ci-tests.yml @@ -63,7 +63,7 @@ jobs: - name: Cache environment directories id: cache-env-dir - uses: actions/cache@v3 + uses: actions/cache@v4 with: path: | .nox @@ -72,7 +72,7 @@ jobs: - name: Cache test data directory id: cache-test-data - uses: actions/cache@v3 + uses: actions/cache@v4 with: path: | ${{ env.IRIS_TEST_DATA_PATH }} diff --git a/.github/workflows/ci-wheels.yml b/.github/workflows/ci-wheels.yml index 22bdeaa5..6aeaa48d 100644 --- a/.github/workflows/ci-wheels.yml +++ b/.github/workflows/ci-wheels.yml @@ -87,7 +87,7 @@ jobs: - name: Cache environment directories id: cache-env-dir - uses: actions/cache@v3 + uses: actions/cache@v4 with: path: | .nox From 6361b9bad072a6dc6771af41c749b700db7936a9 Mon Sep 17 00:00:00 2001 From: "github-actions[bot]" <41898282+github-actions[bot]@users.noreply.github.com> Date: Wed, 28 Feb 2024 16:18:16 +0000 Subject: [PATCH 21/29] Updated environment lockfiles (#335) Co-authored-by: stephenworsley --- requirements/locks/py310-linux-64.lock | 108 ++++++++++++------------ requirements/locks/py311-linux-64.lock | 110 ++++++++++++------------- requirements/locks/py39-linux-64.lock | 108 ++++++++++++------------ 3 files changed, 163 insertions(+), 163 deletions(-) diff --git a/requirements/locks/py310-linux-64.lock b/requirements/locks/py310-linux-64.lock index d43db996..7e56013a 100644 --- a/requirements/locks/py310-linux-64.lock +++ b/requirements/locks/py310-linux-64.lock @@ -3,22 +3,22 @@ # input_hash: 9b3f84cb760433a21e3da419665d9b5958e0f79a6e2da63af997aede5dd62c52 @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 -https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.11.17-hbcca054_0.conda#01ffc8d36f9eba0ce0b3c1955fa780ee +https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2024.2.2-hbcca054_0.conda#2f4327a1cbe7f022401b236e915a5fef https://conda.anaconda.org/conda-forge/noarch/font-ttf-dejavu-sans-mono-2.37-hab24e00_0.tar.bz2#0c96522c6bdaed4b1566d11387caaf45 https://conda.anaconda.org/conda-forge/noarch/font-ttf-inconsolata-3.000-h77eed37_0.tar.bz2#34893075a5c9e55cdafac56607368fc6 https://conda.anaconda.org/conda-forge/noarch/font-ttf-source-code-pro-2.038-h77eed37_0.tar.bz2#4d59c254e01d9cde7957100457e2d5fb https://conda.anaconda.org/conda-forge/noarch/font-ttf-ubuntu-0.83-h77eed37_1.conda#6185f640c43843e5ad6fd1c5372c3f80 https://conda.anaconda.org/conda-forge/linux-64/ld_impl_linux-64-2.40-h41732ed_0.conda#7aca3059a1729aa76c597603f10b0dd3 -https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_3.conda#937eaed008f6bf2191c5fe76f87755e9 +https://conda.anaconda.org/conda-forge/linux-64/libstdcxx-ng-13.2.0-h7e041cc_5.conda#f6f6600d18a4047b54f803cf708b868a https://conda.anaconda.org/conda-forge/linux-64/python_abi-3.10-4_cp310.conda#26322ec5d7712c3ded99dd656142b8ce -https://conda.anaconda.org/conda-forge/noarch/tzdata-2023d-h0c530f3_0.conda#8dee24b8be2d9ff81e7bd4d7d97ff1b0 +https://conda.anaconda.org/conda-forge/noarch/tzdata-2024a-h0c530f3_0.conda#161081fc7cec0bfda0d86d7cb595f8d8 https://conda.anaconda.org/conda-forge/noarch/fonts-conda-forge-1-0.tar.bz2#f766549260d6815b0c52253f1fb1bb29 -https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_3.conda#7124cbb46b13d395bdde68f2d215c989 +https://conda.anaconda.org/conda-forge/linux-64/libgomp-13.2.0-h807b86a_5.conda#d211c42b9ce49aee3734fdc828731689 https://conda.anaconda.org/conda-forge/linux-64/_openmp_mutex-4.5-2_gnu.tar.bz2#73aaf86a425cc6e73fcf236a5a46396d https://conda.anaconda.org/conda-forge/noarch/fonts-conda-ecosystem-1-0.tar.bz2#fee5683a3f04bd15cbd8318b096a27ab -https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_3.conda#23fdf1fef05baeb7eadc2aed5fb0011f +https://conda.anaconda.org/conda-forge/linux-64/libgcc-ng-13.2.0-h807b86a_5.conda#d4ff227c46917d3b4565302a2bbb276b https://conda.anaconda.org/conda-forge/linux-64/bzip2-1.0.8-hd590300_5.conda#69b8b6202a07720f448be700e300ccf4 -https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.25.0-hd590300_0.conda#89e40af02dd3a0846c0c1131c5126706 +https://conda.anaconda.org/conda-forge/linux-64/c-ares-1.27.0-hd590300_0.conda#f6afff0e9ee08d2f1b897881a4f38cdb https://conda.anaconda.org/conda-forge/linux-64/fribidi-1.0.10-h36c2ea0_0.tar.bz2#ac7bc6a654f8f41b352b38f4051135f8 https://conda.anaconda.org/conda-forge/linux-64/geos-3.12.1-h59595ed_0.conda#8c0f4f71f5a59ceb0c6fa9f51501066d https://conda.anaconda.org/conda-forge/linux-64/gettext-0.21.1-h27087fc_0.tar.bz2#14947d8770185e5153fdd04d4673ed37 @@ -33,7 +33,7 @@ https://conda.anaconda.org/conda-forge/linux-64/libdeflate-1.19-hd590300_0.conda https://conda.anaconda.org/conda-forge/linux-64/libev-4.33-hd590300_2.conda#172bf1cd1ff8629f2b1179945ed45055 https://conda.anaconda.org/conda-forge/linux-64/libexpat-2.5.0-hcb278e6_1.conda#6305a3dd2752c76335295da4e581f2fd https://conda.anaconda.org/conda-forge/linux-64/libffi-3.4.2-h7f98852_5.tar.bz2#d645c6d2ac96843a2bfaccd2d62b3ac3 -https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-13.2.0-ha4646dd_3.conda#c714d905cdfa0e70200f68b80cc04764 +https://conda.anaconda.org/conda-forge/linux-64/libgfortran5-13.2.0-ha4646dd_5.conda#7a6bd7a12a4bd359e2afe6c0fa1acace https://conda.anaconda.org/conda-forge/linux-64/libiconv-1.17-hd590300_2.conda#d66573916ffcf376178462f1b61c941e https://conda.anaconda.org/conda-forge/linux-64/libjpeg-turbo-3.0.0-hd590300_1.conda#ea25936bb4080d843790b586850f82b8 https://conda.anaconda.org/conda-forge/linux-64/libmo_unpack-3.1.2-hf484d3e_1001.tar.bz2#95f32a6a5a666d33886ca5627239f03d @@ -44,8 +44,8 @@ https://conda.anaconda.org/conda-forge/linux-64/libxcrypt-4.4.36-hd590300_1.cond https://conda.anaconda.org/conda-forge/linux-64/libzlib-1.2.13-hd590300_5.conda#f36c115f1ee199da648e0597ec2047ad https://conda.anaconda.org/conda-forge/linux-64/lz4-c-1.9.4-hcb278e6_0.conda#318b08df404f9c9be5712aaa5a6f0bb0 https://conda.anaconda.org/conda-forge/linux-64/ncurses-6.4-h59595ed_2.conda#7dbaa197d7ba6032caf7ae7f32c1efa0 -https://conda.anaconda.org/conda-forge/linux-64/openssl-3.2.0-hd590300_1.conda#603827b39ea2b835268adb8c821b8570 -https://conda.anaconda.org/conda-forge/linux-64/pixman-0.43.0-h59595ed_0.conda#6b4b43013628634b6cfdee6b74fd696b +https://conda.anaconda.org/conda-forge/linux-64/openssl-3.2.1-hd590300_0.conda#51a753e64a3027bd7e23a189b1f6e91e +https://conda.anaconda.org/conda-forge/linux-64/pixman-0.43.2-h59595ed_0.conda#71004cbf7924e19c02746ccde9fd7123 https://conda.anaconda.org/conda-forge/linux-64/pthread-stubs-0.4-h36c2ea0_1001.tar.bz2#22dad4df6e8630e8dff2428f6f6a7036 https://conda.anaconda.org/conda-forge/linux-64/snappy-1.1.10-h9fff704_0.conda#e6d228cd0bb74a51dd18f5bfce0b4115 https://conda.anaconda.org/conda-forge/linux-64/xorg-kbproto-1.0.7-h7f98852_1002.tar.bz2#4b230e8381279d76131116660f5a241a @@ -63,14 +63,14 @@ https://conda.anaconda.org/conda-forge/linux-64/hdf4-4.2.15-h2a13503_7.conda#bd7 https://conda.anaconda.org/conda-forge/linux-64/libbrotlidec-1.1.0-hd590300_1.conda#f07002e225d7a60a694d42a7bf5ff53f https://conda.anaconda.org/conda-forge/linux-64/libbrotlienc-1.1.0-hd590300_1.conda#5fc11c6020d421960607d821310fcd4d https://conda.anaconda.org/conda-forge/linux-64/libedit-3.1.20191231-he28a2e2_2.tar.bz2#4d331e44109e3f0e19b4cb8f9b82f3e1 -https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-13.2.0-h69a702a_3.conda#73031c79546ad06f1fe62e57fdd021bc +https://conda.anaconda.org/conda-forge/linux-64/libgfortran-ng-13.2.0-h69a702a_5.conda#e73e9cfd1191783392131e6238bdb3e9 https://conda.anaconda.org/conda-forge/linux-64/libnghttp2-1.58.0-h47da74e_1.conda#700ac6ea6d53d5510591c4344d5c989a -https://conda.anaconda.org/conda-forge/linux-64/libpng-1.6.39-h753d276_0.conda#e1c890aebdebbfbf87e2c917187b4416 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https://conda.anaconda.org/conda-forge/linux-64/libzip-1.10.1-h2629f0a_3.conda#ac79812548e7e8cf61f7b0abdef01d3b https://conda.anaconda.org/conda-forge/linux-64/pcre2-10.42-hcad00b1_0.conda#679c8961826aa4b50653bce17ee52abe https://conda.anaconda.org/conda-forge/linux-64/readline-8.2-h8228510_1.conda#47d31b792659ce70f470b5c82fdfb7a4 @@ -82,57 +82,56 @@ https://conda.anaconda.org/conda-forge/linux-64/blosc-1.21.5-h0f2a231_0.conda#00 https://conda.anaconda.org/conda-forge/linux-64/brotli-bin-1.1.0-hd590300_1.conda#39f910d205726805a958da408ca194ba https://conda.anaconda.org/conda-forge/linux-64/freetype-2.12.1-h267a509_2.conda#9ae35c3d96db2c94ce0cef86efdfa2cb https://conda.anaconda.org/conda-forge/linux-64/krb5-1.21.2-h659d440_0.conda#cd95826dbd331ed1be26bdf401432844 -https://conda.anaconda.org/conda-forge/linux-64/libglib-2.78.3-h783c2da_0.conda#9bd06b12bbfa6fd1740fd23af4b0f0c7 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+def _regrid_along_dims(data, regridder, dims, num_out_dims, mdtol): """ Perform regridding on data over specific dimensions. Parameters ---------- - regridder : Regridder - An instance of Regridder initialised to perform regridding. data : array The data to be regrid. + regridder : Regridder + An instance of Regridder initialised to perform regridding. dims : tuple of int The dimensions in the source data to regrid along. num_out_dims : int @@ -276,7 +275,7 @@ def _regrid_along_dims(regridder, data, dims, num_out_dims, mdtol): return result -def _map_complete_blocks(src, func, dims, out_sizes): +def _map_complete_blocks(src, func, active_dims, out_sizes, *args, **kwargs): """ Apply a function to complete blocks. @@ -296,7 +295,7 @@ def _map_complete_blocks(src, func, dims, out_sizes): Source :class:`~iris.cube.Cube` that function is applied to. func : function Function to apply. - dims : tuple of int + active_dims : tuple of int Dimensions that cannot be chunked. out_sizes : tuple of int Output size of dimensions that cannot be chunked. @@ -309,25 +308,25 @@ def _map_complete_blocks(src, func, dims, out_sizes): """ if not src.has_lazy_data(): - return func(src.data) + return func(src.data, *args, **kwargs) data = src.lazy_data() # Ensure dims are not chunked in_chunks = list(data.chunks) - for dim in dims: + for dim in active_dims: in_chunks[dim] = src.shape[dim] data = data.rechunk(in_chunks) # Determine output chunks - num_dims = len(dims) + num_dims = len(active_dims) num_out = len(out_sizes) out_chunks = list(data.chunks) - sorted_dims = sorted(dims) + sorted_dims = sorted(active_dims) if num_out == 1: out_chunks[sorted_dims[0]] = out_sizes[0] else: - for dim, size in zip(dims, out_sizes): + for dim, size in zip(active_dims, out_sizes): # Note: when mapping 2D to 2D, this will be the only alteration to # out_chunks, the same as iris._lazy_data.map_complete_blocks out_chunks[dim] = size @@ -370,10 +369,12 @@ def _map_complete_blocks(src, func, dims, out_sizes): return data.map_blocks( func, + *args, chunks=out_chunks, drop_axis=dropped_dims, new_axis=new_axis, dtype=src.dtype, + **kwargs, ) @@ -556,15 +557,6 @@ def _regrid_rectilinear_to_rectilinear__perform(src_cube, regrid_info, mdtol): grid_x, grid_y = regrid_info.target regridder = regrid_info.regridder - # Set up a function which can accept just chunk of data as an argument. - regrid = functools.partial( - _regrid_along_dims, - regridder, - dims=[grid_x_dim, grid_y_dim], - num_out_dims=2, - mdtol=mdtol, - ) - # Apply regrid to all the chunks of src_cube, ensuring first that all # chunks cover the entire horizontal plane (otherwise they would break # the regrid function). @@ -575,9 +567,13 @@ def _regrid_rectilinear_to_rectilinear__perform(src_cube, regrid_info, mdtol): chunk_shape = grid_x.shape[::-1] new_data = _map_complete_blocks( src_cube, - regrid, + _regrid_along_dims, (grid_x_dim, grid_y_dim), chunk_shape, + regridder=regridder, + dims=[grid_x_dim, grid_y_dim], + num_out_dims=2, + mdtol=mdtol, ) new_cube = _create_cube( @@ -640,15 +636,6 @@ def _regrid_unstructured_to_rectilinear__perform(src_cube, regrid_info, mdtol): grid_x, grid_y = regrid_info.target regridder = regrid_info.regridder - # Set up a function which can accept just chunk of data as an argument. - regrid = functools.partial( - _regrid_along_dims, - regridder, - dims=[mesh_dim], - num_out_dims=2, - mdtol=mdtol, - ) - # Apply regrid to all the chunks of src_cube, ensuring first that all # chunks cover the entire horizontal plane (otherwise they would break # the regrid function). @@ -659,9 +646,13 @@ def _regrid_unstructured_to_rectilinear__perform(src_cube, regrid_info, mdtol): chunk_shape = grid_x.shape[::-1] new_data = _map_complete_blocks( src_cube, - regrid, + _regrid_along_dims, (mesh_dim,), chunk_shape, + regridder=regridder, + dims=[mesh_dim], + num_out_dims=2, + mdtol=mdtol, ) new_cube = _create_cube( @@ -738,14 +729,6 @@ def _regrid_rectilinear_to_unstructured__perform(src_cube, regrid_info, mdtol): mesh, location = regrid_info.target regridder = regrid_info.regridder - # Set up a function which can accept just chunk of data as an argument. - regrid = functools.partial( - _regrid_along_dims, - regridder, - dims=[grid_x_dim, grid_y_dim], - num_out_dims=1, - mdtol=mdtol, - ) if location == "face": face_node = mesh.face_node_connectivity # In face_node_connectivity: `location`= face, `connected` = node, so @@ -761,9 +744,13 @@ def _regrid_rectilinear_to_unstructured__perform(src_cube, regrid_info, mdtol): # the regrid function). new_data = _map_complete_blocks( src_cube, - regrid, + _regrid_along_dims, (grid_x_dim, grid_y_dim), chunk_shape, + regridder=regridder, + dims=[grid_x_dim, grid_y_dim], + num_out_dims=1, + mdtol=mdtol, ) new_cube = _create_cube( @@ -836,13 +823,6 @@ def _regrid_unstructured_to_unstructured__perform(src_cube, regrid_info, mdtol): mesh, location = regrid_info.target regridder = regrid_info.regridder - regrid = functools.partial( - _regrid_along_dims, - regridder, - dims=[mesh_dim], - num_out_dims=1, - mdtol=mdtol, - ) if location == "face": face_node = mesh.face_node_connectivity chunk_shape = (face_node.shape[face_node.location_axis],) @@ -853,9 +833,13 @@ def _regrid_unstructured_to_unstructured__perform(src_cube, regrid_info, mdtol): new_data = _map_complete_blocks( src_cube, - regrid, + _regrid_along_dims, (mesh_dim,), chunk_shape, + regridder=regridder, + dims=[mesh_dim], + num_out_dims=1, + mdtol=mdtol, ) new_cube = _create_cube( From 94f3e0576af0bd0abb07d54d0084eec0569526df Mon Sep 17 00:00:00 2001 From: stephenworsley <49274989+stephenworsley@users.noreply.github.com> Date: Tue, 23 Apr 2024 17:32:28 +0100 Subject: [PATCH 24/29] Fix for esmpy (#353) * fix node/element indexing to work with latest esmpy * fix for codecov * add coverage code back to nox * add coverage code back to nox * add coverage code back to nox don't test 3.9 * remove python 3.9 * remove codecov from nox again * remove python 3.9 references --- .github/workflows/ci-tests.yml | 8 +- .github/workflows/ci-wheels.yml | 2 +- .../experimental/unstructured_regrid.py | 8 +- noxfile.py | 3 +- pyproject.toml | 5 +- requirements/locks/py39-linux-64.lock | 242 ------------------ requirements/py39.yml | 32 --- 7 files changed, 14 insertions(+), 286 deletions(-) delete mode 100644 requirements/locks/py39-linux-64.lock delete mode 100644 requirements/py39.yml diff --git a/.github/workflows/ci-tests.yml b/.github/workflows/ci-tests.yml index 6998475a..19d1aea7 100644 --- a/.github/workflows/ci-tests.yml +++ b/.github/workflows/ci-tests.yml @@ -48,7 +48,7 @@ jobs: fail-fast: false matrix: os: ["ubuntu-latest"] - python-version: ["3.9", "3.10", "3.11"] + python-version: ["3.10", "3.11"] include: - python-version: "3.10" coverage: true @@ -97,3 +97,9 @@ jobs: COVERAGE: ${{ matrix.coverage }} run: | nox --session tests -- --verbose + + - name: Upload coverage report + uses: codecov/codecov-action@v4 + if: ${{ matrix.coverage }} + with: + token: ${{ secrets.CODECOV_TOKEN }} diff --git a/.github/workflows/ci-wheels.yml b/.github/workflows/ci-wheels.yml index 6aeaa48d..d730353e 100644 --- a/.github/workflows/ci-wheels.yml +++ b/.github/workflows/ci-wheels.yml @@ -67,7 +67,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ["3.9", "3.10"] + python-version: ["3.10"] session: ["wheel"] steps: diff --git a/esmf_regrid/experimental/unstructured_regrid.py b/esmf_regrid/experimental/unstructured_regrid.py index 397b8a15..39960be9 100644 --- a/esmf_regrid/experimental/unstructured_regrid.py +++ b/esmf_regrid/experimental/unstructured_regrid.py @@ -75,11 +75,9 @@ def __init__( if location == "face": field_kwargs = {"meshloc": esmpy.MeshLoc.ELEMENT} shape = (len(face_node_connectivity),) - index_offset = self.esi elif location == "node": field_kwargs = {"meshloc": esmpy.MeshLoc.NODE} shape = (len(node_coords),) - index_offset = self.nsi else: raise ValueError( f"The mesh location '{location}' is not supported, only " @@ -87,7 +85,7 @@ def __init__( ) super().__init__( shape=shape, - index_offset=index_offset, + index_offset=1, field_kwargs=field_kwargs, mask=mask, ) @@ -97,10 +95,10 @@ def _as_esmf_info(self): # the data must be translated into a form ESMF understands num_node = self.node_coords.shape[0] num_elem = self.fnc.shape[0] - nodeId = np.array(range(self.nsi, self.nsi + num_node)) + nodeId = np.arange(1, num_node + 1) nodeCoord = self.node_coords.flatten() nodeOwner = np.zeros([num_node]) # regridding currently serial - elemId = np.array(range(self.esi, self.esi + num_elem)) + elemId = np.arange(1, num_elem + 1) elemType = self.fnc.count(axis=1) # Experiments seem to indicate that ESMF is using 0 indexing here elemConn = self.fnc.compressed() - self.nsi diff --git a/noxfile.py b/noxfile.py index 2fbfa354..17e13838 100644 --- a/noxfile.py +++ b/noxfile.py @@ -26,7 +26,7 @@ PACKAGE = "esmf_regrid" #: GHA-CI environment variable hook. -PY_VER = os.environ.get("PY_VER", ["3.9", "3.10", "3.11"]) +PY_VER = os.environ.get("PY_VER", ["3.10", "3.11"]) #: GHA-CI environment variable hook. COVERAGE = os.environ.get("COVERAGE", False) @@ -308,7 +308,6 @@ def tests(session: nox.sessions.Session): if COVERAGE: # Execute the tests with code coverage. session.run("pytest", "--cov-report=xml", "--cov") - session.run("codecov", "--required") else: # Execute the tests. session.run("pytest") diff --git a/pyproject.toml b/pyproject.toml index fa19b3d8..aa9cd939 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -18,7 +18,6 @@ classifiers = [ "Natural Language :: English", "Operating System :: OS Independent", "Programming Language :: Python :: 3", - "Programming Language :: Python :: 3.9", "Programming Language :: Python :: 3.10", "Programming Language :: Python :: 3.11", "Topic :: Scientific/Engineering :: Atmospheric Science", @@ -36,7 +35,7 @@ keywords = [ ] license = {text = "BSD-3-Clause"} name = "esmf_regrid" -requires-python = ">=3.8" +requires-python = ">=3.10" [project.urls] Code = "https://github.com/SciTools-incubator/iris-esmf-regrid" @@ -45,7 +44,7 @@ Issues = 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-https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-qthelp-1.0.7-pyhd8ed1ab_0.conda#26acae54b06f178681bfb551760f5dd1 -https://conda.anaconda.org/conda-forge/noarch/sphinx-5.3.0-pyhd8ed1ab_0.tar.bz2#f9e1fcfe235d655900bfeb6aee426472 -https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-serializinghtml-1.1.10-pyhd8ed1ab_0.conda#e507335cb4ca9cff4c3d0fa9cdab255e diff --git a/requirements/py39.yml b/requirements/py39.yml deleted file mode 100644 index 9a1c909e..00000000 --- a/requirements/py39.yml +++ /dev/null @@ -1,32 +0,0 @@ -name: esmf-regrid-dev - -channels: - - conda-forge - -dependencies: - - python=3.9 - -# Setup dependencies. - - setuptools>=40.8.0 - -# Core dependencies. - - cartopy>=0.18 - - numpy>=1.14 - - scipy - - esmpy>=7.0 - - iris - - cf-units - -# Test dependencies. - - asv - - codecov - - nox - - pre-commit - - pytest - - pytest-cov - -# Docs dependencies. - - pydata-sphinx-theme - - sphinx - - sphinx-copybutton - - sphinxcontrib-apidoc From 01369d17120e687bd4ab698bdc42f9b15ec59dd5 Mon Sep 17 00:00:00 2001 From: stephenworsley <49274989+stephenworsley@users.noreply.github.com> Date: Thu, 25 Apr 2024 14:06:57 +0100 Subject: [PATCH 25/29] Update lockfiles and fix for new esmpy (#342) * fix for new esmpy * alternate fix for esmpy 8.6 * upgrade python versions * upgrade python versions for wheel ci * alternate approach for coverage * try codecov v3 * add token to codecov action * pin conda for asv * fix conda for asv * fix conda for asv * back out conda actions * pin conda for benchmarks * fix conda for benchmarks * fix ESMFMKFILE for benchmarks --- .github/workflows/ci-tests.yml | 4 +- .github/workflows/ci-wheels.yml | 2 +- benchmarks/asv_delegated_conda.py | 1 + benchmarks/benchmarks/generate_data.py | 6 + noxfile.py | 5 +- pyproject.toml | 3 +- requirements/locks/py310-linux-64.lock | 310 ++++++++++++++------- requirements/locks/py311-linux-64.lock | 307 ++++++++++++++------- requirements/locks/py312-linux-64.lock | 355 +++++++++++++++++++++++++ requirements/py312.yml | 32 +++ 10 files changed, 825 insertions(+), 200 deletions(-) create mode 100644 requirements/locks/py312-linux-64.lock create mode 100644 requirements/py312.yml diff --git a/.github/workflows/ci-tests.yml b/.github/workflows/ci-tests.yml index 19d1aea7..aa7463a6 100644 --- a/.github/workflows/ci-tests.yml +++ b/.github/workflows/ci-tests.yml @@ -48,9 +48,9 @@ jobs: fail-fast: false matrix: os: ["ubuntu-latest"] - python-version: ["3.10", "3.11"] + python-version: ["3.10", "3.11", "3.12"] include: - - python-version: "3.10" + - python-version: "3.11" coverage: true steps: diff --git a/.github/workflows/ci-wheels.yml b/.github/workflows/ci-wheels.yml index d730353e..1174ae3f 100644 --- a/.github/workflows/ci-wheels.yml +++ b/.github/workflows/ci-wheels.yml @@ -67,7 +67,7 @@ jobs: strategy: fail-fast: false matrix: - python-version: ["3.10"] + python-version: ["3.10", "3.11", "3.12"] session: ["wheel"] steps: diff --git a/benchmarks/asv_delegated_conda.py b/benchmarks/asv_delegated_conda.py index 34312bad..30810309 100644 --- a/benchmarks/asv_delegated_conda.py +++ b/benchmarks/asv_delegated_conda.py @@ -114,6 +114,7 @@ def _prep_env(self) -> None: message = f"Running delegated environment management for: {self.name}" log.info(message) env_path = Path(self._path) + environ["ESMFMKFILE"] = str(env_path / "lib" / "esmf.mk") def copy_asv_files(src_parent: Path, dst_parent: Path) -> None: """For copying between self._path and a temporary cache.""" diff --git a/benchmarks/benchmarks/generate_data.py b/benchmarks/benchmarks/generate_data.py index 34c7ab5c..dc9127b0 100644 --- a/benchmarks/benchmarks/generate_data.py +++ b/benchmarks/benchmarks/generate_data.py @@ -16,6 +16,7 @@ from pathlib import Path import re from subprocess import CalledProcessError, check_output, run +import sys from textwrap import dedent from warnings import warn @@ -55,6 +56,8 @@ # False forces a benchmark run to re-make all the data files. REUSE_DATA = True +ESMFMKFILE = "ESMFMKFILE" + def run_function_elsewhere(func_to_run, *args, **kwargs): """ @@ -90,9 +93,12 @@ def run_function_elsewhere(func_to_run, *args, **kwargs): f"{func_to_run.__name__}(" + ",".join(func_call_term_strings) + ")" ) python_string = "\n".join([func_string, func_call_string]) + old_esmf_mk_file = environ.get(ESMFMKFILE, None) + environ[ESMFMKFILE] = str(Path(sys.executable).parents[1] / "lib" / "esmf.mk") result = run( [DATA_GEN_PYTHON, "-c", python_string], capture_output=True, check=True ) + environ[ESMFMKFILE] = old_esmf_mk_file return result.stdout diff --git a/noxfile.py b/noxfile.py index 17e13838..58b1436b 100644 --- a/noxfile.py +++ b/noxfile.py @@ -26,7 +26,7 @@ PACKAGE = "esmf_regrid" #: GHA-CI environment variable hook. -PY_VER = os.environ.get("PY_VER", ["3.10", "3.11"]) +PY_VER = os.environ.get("PY_VER", ["3.10", "3.11", "3.12"]) #: GHA-CI environment variable hook. COVERAGE = os.environ.get("COVERAGE", False) @@ -370,6 +370,7 @@ def benchmarks( COMPARE_FACTOR = 2.0 session.install("asv", "nox", "pyyaml") + session.run("conda", "install", "--yes", "conda<24.3") data_gen_var = "DATA_GEN_PYTHON" if data_gen_var in os.environ: @@ -391,8 +392,6 @@ def benchmarks( Path(".nox").rglob(f"tests*/bin/python{PY_VER}") ).resolve() session.env[data_gen_var] = data_gen_python - esmf_mk_file = data_gen_python.parents[1] / "lib" / "esmf.mk" - session.env[ESMFMKFILE] = esmf_mk_file print("Running ASV...") session.cd("benchmarks") diff --git a/pyproject.toml b/pyproject.toml index aa9cd939..98611a06 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -20,6 +20,7 @@ classifiers = [ "Programming Language :: Python :: 3", "Programming Language :: Python :: 3.10", "Programming Language :: Python :: 3.11", + "Programming Language :: Python :: 3.12", "Topic :: Scientific/Engineering :: Atmospheric Science", ] description = "Iris regridding scheme using ESMF" @@ -44,7 +45,7 @@ Issues = "https://github.com/SciTools-incubator/iris-esmf-regrid/issues" [tool.black] line-length = 88 -target-version = ['py310', 'py311'] +target-version = ['py310', 'py311', 'py312'] include = '\.pyi?$' [tool.pytest.ini_options] diff --git a/requirements/locks/py310-linux-64.lock b/requirements/locks/py310-linux-64.lock index d43db996..e079e211 100644 --- a/requirements/locks/py310-linux-64.lock +++ b/requirements/locks/py310-linux-64.lock @@ -1,233 +1,349 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: 9b3f84cb760433a21e3da419665d9b5958e0f79a6e2da63af997aede5dd62c52 +# input_hash: 5c8249bb0062f66709e498ae99fb00e4ab8b9b502a5242b5364aa8fad96047da @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 -https://conda.anaconda.org/conda-forge/linux-64/ca-certificates-2023.11.17-hbcca054_0.conda#01ffc8d36f9eba0ce0b3c1955fa780ee 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<41898282+github-actions[bot]@users.noreply.github.com> Date: Thu, 2 May 2024 09:25:23 +0100 Subject: [PATCH 26/29] Updated environment lockfiles (#344) Co-authored-by: stephenworsley --- requirements/locks/py310-linux-64.lock | 68 ++++++------ requirements/locks/py311-linux-64.lock | 145 +++++++++++-------------- requirements/locks/py312-linux-64.lock | 67 ++++++------ 3 files changed, 132 insertions(+), 148 deletions(-) diff --git a/requirements/locks/py310-linux-64.lock b/requirements/locks/py310-linux-64.lock index e079e211..8cab82b4 100644 --- a/requirements/locks/py310-linux-64.lock +++ b/requirements/locks/py310-linux-64.lock @@ -1,6 +1,6 @@ # Generated by conda-lock. # platform: linux-64 -# input_hash: 5c8249bb0062f66709e498ae99fb00e4ab8b9b502a5242b5364aa8fad96047da +# input_hash: bf3a031f772eb826f19570c89b7c1f4d532941551c131b04e8404c4c06efe91b @EXPLICIT https://conda.anaconda.org/conda-forge/linux-64/_libgcc_mutex-0.1-conda_forge.tar.bz2#d7c89558ba9fa0495403155b64376d81 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-https://conda.anaconda.org/conda-forge/linux-64/pykdtree-1.3.11-py312hc7c0aa3_0.conda#38b3ec047cefe673613dd406f605e009 +https://conda.anaconda.org/conda-forge/linux-64/pykdtree-1.3.12-py312hcc4bcb2_0.conda#d0e548b693e66e4410599f8fe0d59f53 https://conda.anaconda.org/conda-forge/linux-64/pywavelets-1.4.1-py312hc7c0aa3_1.conda#b91ccda9d16e7016efd831c7d8f97a9e https://conda.anaconda.org/conda-forge/linux-64/scipy-1.13.0-py312heda63a1_0.conda#c53b9f319cafc679476f5613599857e8 https://conda.anaconda.org/conda-forge/linux-64/shapely-2.0.4-py312h9e6bd2c_0.conda#770f506aa607cb6ff2a57e35e289ab20 https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-apidoc-0.3.0-py_1.tar.bz2#855b087883443abb10f5faf6eef40860 https://conda.anaconda.org/conda-forge/noarch/tox-4.14.2-pyhd8ed1ab_0.conda#0c3413e30566dbc162c71ef7190259c4 -https://conda.anaconda.org/conda-forge/noarch/wslink-2.0.1-pyhd8ed1ab_0.conda#8f872992ec702adb584a8e1f665fee0e +https://conda.anaconda.org/conda-forge/noarch/wslink-2.0.2-pyhd8ed1ab_0.conda#0c046a28359b6c6f82b3a8adbf7d2f90 https://conda.anaconda.org/conda-forge/linux-64/cf-units-3.2.0-py312hc7c0aa3_4.conda#d9c9fa64fdf4e57d7f8957b957d784a0 -https://conda.anaconda.org/conda-forge/noarch/distributed-2024.4.1-pyhd8ed1ab_0.conda#822b8d8216764941bb099fea588127ad -https://conda.anaconda.org/conda-forge/linux-64/esmf-8.6.0-nompi_h7b237b1_0.conda#a5f1925a75d9fcf0bffd07a194f83895 -https://conda.anaconda.org/conda-forge/linux-64/ffmpeg-6.1.1-gpl_hee4b679_108.conda#66701e0a42c7f02d79d3856942f14e05 +https://conda.anaconda.org/conda-forge/noarch/distributed-2024.4.2-pyhd8ed1ab_0.conda#e4e11467ccf467cbe34cbe84dedbca77 +https://conda.anaconda.org/conda-forge/linux-64/esmf-8.6.1-nompi_h7b237b1_0.conda#9b02a6cf1c7647c18e78f1a30ab48772 +https://conda.anaconda.org/conda-forge/linux-64/ffmpeg-6.1.1-gpl_h5f74e41_109.conda#7479da4590fd620191d6b06d4a5365f8 https://conda.anaconda.org/conda-forge/linux-64/gtk2-2.24.33-h280cfa0_4.conda#410f86e58e880dcc7b0e910a8e89c05c https://conda.anaconda.org/conda-forge/noarch/imagehash-4.3.1-pyhd8ed1ab_0.tar.bz2#132ad832787a2156be1f1b309835001a -https://conda.anaconda.org/conda-forge/linux-64/librsvg-2.58.0-hce6bd6c_0.conda#0891de8980ee29828542dbf9578838b9 +https://conda.anaconda.org/conda-forge/linux-64/librsvg-2.58.0-hadf69e7_1.conda#0e2b5bd9533043b41f9482ae9e2c16b5 https://conda.anaconda.org/conda-forge/linux-64/matplotlib-base-3.8.4-py312he5832f3_0.conda#5377a9a29f607eebe4ad63eb82bcb575 https://conda.anaconda.org/conda-forge/linux-64/netcdf4-1.6.5-nompi_py312h26027e0_100.conda#2d7b4954dc5a090796e0ba89c325d09b https://conda.anaconda.org/conda-forge/noarch/nox-2024.4.15-pyhff2d567_0.conda#600c0de12125f473d8099c0b3e6f88d4 @@ -334,7 +334,7 @@ https://conda.anaconda.org/conda-forge/linux-64/python-stratify-0.3.0-py312hc7c0 https://conda.anaconda.org/conda-forge/linux-64/qt-main-5.15.8-h5810be5_19.conda#54866f708d43002a514d0b9b0f84bc11 https://conda.anaconda.org/conda-forge/linux-64/cartopy-0.23.0-py312hfb8ada1_0.conda#73e223e294f96540f293bf977a37696c https://conda.anaconda.org/conda-forge/noarch/cmocean-4.0.3-pyhd8ed1ab_0.conda#53df00540de0348ed1b2a62684dd912b -https://conda.anaconda.org/conda-forge/noarch/esmpy-8.6.0-pyhc1e730c_0.conda#60404b48ef1ccfb92cfd055f8844b700 +https://conda.anaconda.org/conda-forge/noarch/esmpy-8.6.1-pyhc1e730c_0.conda#25a9661177fd68bfdb4314fd658e5c3b https://conda.anaconda.org/conda-forge/linux-64/graphviz-9.0.0-h78e8752_1.conda#a3f4cd4a512ec5db35ffbf25ba11f537 https://conda.anaconda.org/conda-forge/noarch/nc-time-axis-1.4.1-pyhd8ed1ab_0.tar.bz2#281b58948bf60a2582de9e548bcc5369 https://conda.anaconda.org/conda-forge/linux-64/vtk-base-9.2.6-qt_py312h1234567_220.conda#1dc0327554f77b69e50dd7e000bcb466 @@ -350,6 +350,5 @@ https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-applehelp-1.0.8-pyhd https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-devhelp-1.0.6-pyhd8ed1ab_0.conda#d7e4954df0d3aea2eacc7835ad12671d https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-htmlhelp-2.0.5-pyhd8ed1ab_0.conda#7e1e7437273682ada2ed5e9e9714b140 https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-qthelp-1.0.7-pyhd8ed1ab_0.conda#26acae54b06f178681bfb551760f5dd1 -https://conda.anaconda.org/conda-forge/noarch/sphinx-7.3.5-pyhd8ed1ab_0.conda#187eae39c9eb8552e18ece95148cee9a +https://conda.anaconda.org/conda-forge/noarch/sphinx-7.3.7-pyhd8ed1ab_0.conda#7b1465205e28d75d2c0e1a868ee00a67 https://conda.anaconda.org/conda-forge/noarch/sphinxcontrib-serializinghtml-1.1.10-pyhd8ed1ab_0.conda#e507335cb4ca9cff4c3d0fa9cdab255e - From fbe588248df451f443c3a7213c4e5173d04852cb Mon Sep 17 00:00:00 2001 From: "pre-commit-ci[bot]" <66853113+pre-commit-ci[bot]@users.noreply.github.com> Date: Thu, 2 May 2024 09:27:45 +0100 Subject: [PATCH 27/29] [pre-commit.ci] pre-commit autoupdate (#336) MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit * [pre-commit.ci] pre-commit autoupdate updates: - [github.com/pre-commit/pre-commit-hooks: v4.5.0 → v4.6.0](https://github.com/pre-commit/pre-commit-hooks/compare/v4.5.0...v4.6.0) - [github.com/psf/black: 23.12.1 → 24.4.2](https://github.com/psf/black/compare/23.12.1...24.4.2) * [pre-commit.ci] auto fixes from pre-commit.com hooks for more information, see https://pre-commit.ci --------- Co-authored-by: pre-commit-ci[bot] <66853113+pre-commit-ci[bot]@users.noreply.github.com> --- .pre-commit-config.yaml | 4 ++-- benchmarks/benchmarks/__init__.py | 1 - benchmarks/benchmarks/generate_data.py | 1 + .../test_regrid_unstructured_to_rectilinear.py | 1 - 4 files changed, 3 insertions(+), 4 deletions(-) diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml index a2d63c65..d7131650 100644 --- a/.pre-commit-config.yaml +++ b/.pre-commit-config.yaml @@ -2,7 +2,7 @@ # See https://pre-commit.com/hooks.html for more hooks repos: - repo: https://github.com/pre-commit/pre-commit-hooks - rev: 'v4.5.0' + rev: 'v4.6.0' hooks: # Prevent giant files from being committed. - id: check-added-large-files @@ -17,7 +17,7 @@ repos: # Don't commit to master branch. - id: no-commit-to-branch - repo: https://github.com/psf/black - rev: '23.12.1' + rev: '24.4.2' hooks: - id: black # Force black to run on whole repo, using settings from pyproject.toml diff --git a/benchmarks/benchmarks/__init__.py b/benchmarks/benchmarks/__init__.py index f398f985..ce79d0ae 100644 --- a/benchmarks/benchmarks/__init__.py +++ b/benchmarks/benchmarks/__init__.py @@ -1,6 +1,5 @@ """Benchmark tests for iris-esmf-regrid.""" - from os import environ diff --git a/benchmarks/benchmarks/generate_data.py b/benchmarks/benchmarks/generate_data.py index dc9127b0..c2c55e39 100644 --- a/benchmarks/benchmarks/generate_data.py +++ b/benchmarks/benchmarks/generate_data.py @@ -11,6 +11,7 @@ benchmark sequence runs over two different Python versions. """ + from inspect import getsource from os import environ from pathlib import Path diff --git a/esmf_regrid/tests/integration/experimental/unstructured_scheme/test_regrid_unstructured_to_rectilinear.py b/esmf_regrid/tests/integration/experimental/unstructured_scheme/test_regrid_unstructured_to_rectilinear.py index d7aafe31..e7f47353 100644 --- a/esmf_regrid/tests/integration/experimental/unstructured_scheme/test_regrid_unstructured_to_rectilinear.py +++ b/esmf_regrid/tests/integration/experimental/unstructured_scheme/test_regrid_unstructured_to_rectilinear.py @@ -1,6 +1,5 @@ """Integration tests for :func:`esmf_regrid.experimental.unstructured_scheme.regrid_unstructured_to_rectilinear`.""" - import os import iris From 1bd7c21c99254c1ad3a2e9345237651ede637971 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 2 May 2024 09:29:38 +0100 Subject: [PATCH 28/29] Bump peter-evans/create-pull-request from 5.0.2 to 6.0.5 (#355) Bumps [peter-evans/create-pull-request](https://github.com/peter-evans/create-pull-request) from 5.0.2 to 6.0.5. - [Release notes](https://github.com/peter-evans/create-pull-request/releases) - [Commits](https://github.com/peter-evans/create-pull-request/compare/153407881ec5c347639a548ade7d8ad1d6740e38...6d6857d36972b65feb161a90e484f2984215f83e) --- updated-dependencies: - dependency-name: peter-evans/create-pull-request dependency-type: direct:production update-type: version-update:semver-major ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/refresh-lockfiles.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/refresh-lockfiles.yml b/.github/workflows/refresh-lockfiles.yml index 601d5519..4e2fc61a 100644 --- a/.github/workflows/refresh-lockfiles.yml +++ b/.github/workflows/refresh-lockfiles.yml @@ -32,7 +32,7 @@ jobs: - name: generate lockfiles run: $CONDA/bin/nox --session update_lockfiles - name: create pull request - uses: peter-evans/create-pull-request@153407881ec5c347639a548ade7d8ad1d6740e38 + uses: peter-evans/create-pull-request@6d6857d36972b65feb161a90e484f2984215f83e with: commit-message: Updated environment lockfiles delete-branch: true From fa3541b4e7095459ce27aa09987f5693553ed278 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Thu, 2 May 2024 09:30:37 +0100 Subject: [PATCH 29/29] Bump scitools/workflows from 2024.01.0 to 2024.04.3 (#356) Bumps [scitools/workflows](https://github.com/scitools/workflows) from 2024.01.0 to 2024.04.3. - [Release notes](https://github.com/scitools/workflows/releases) - [Commits](https://github.com/scitools/workflows/compare/2024.01.0...2024.04.3) --- updated-dependencies: - dependency-name: scitools/workflows dependency-type: direct:production ... Signed-off-by: dependabot[bot] Co-authored-by: dependabot[bot] <49699333+dependabot[bot]@users.noreply.github.com> --- .github/workflows/ci-manifest.yml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/ci-manifest.yml b/.github/workflows/ci-manifest.yml index e02e8563..5b1675b9 100644 --- a/.github/workflows/ci-manifest.yml +++ b/.github/workflows/ci-manifest.yml @@ -20,4 +20,4 @@ concurrency: jobs: manifest: name: "check-manifest" - uses: scitools/workflows/.github/workflows/ci-manifest.yml@2024.01.0 + uses: scitools/workflows/.github/workflows/ci-manifest.yml@2024.04.3