From 12ccaef2e4a8df999f6eeb50b56571ac94b0c1d6 Mon Sep 17 00:00:00 2001 From: Sam Isaacson Date: Mon, 28 Oct 2024 07:52:33 -0400 Subject: [PATCH 1/3] try to disable bifkit extension --- Project.toml | 5 +---- 1 file changed, 1 insertion(+), 4 deletions(-) diff --git a/Project.toml b/Project.toml index c100c1b450..468e71ef16 100644 --- a/Project.toml +++ b/Project.toml @@ -28,7 +28,6 @@ Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [weakdeps] -BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665" CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" GraphMakie = "1ecd5474-83a3-4783-bb4f-06765db800d2" HomotopyContinuation = "f213a82b-91d6-5c5d-acf7-10f1c761b327" @@ -42,7 +41,6 @@ CatalystHomotopyContinuationExtension = "HomotopyContinuation" # CatalystStructuralIdentifiabilityExtension = "StructuralIdentifiability" [compat] -BifurcationKit = "0.3" CairoMakie = "0.12" Combinatorics = "1.0.2" DataStructures = "0.18" @@ -71,7 +69,6 @@ Unitful = "1.12.4" julia = "1.10" [extras] -BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665" CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" DiffEqCallbacks = "459566f4-90b8-5000-8ac3-15dfb0a30def" DomainSets = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" @@ -97,4 +94,4 @@ Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [targets] -test = ["BifurcationKit", "CairoMakie", "DiffEqCallbacks", "DomainSets", "Graphviz_jll", "HomotopyContinuation", "Logging", "GraphMakie", "NonlinearSolve", "OrdinaryDiffEq", "Plots", "Random", "SafeTestsets", "SciMLBase", "SciMLNLSolve", "StableRNGs", "StaticArrays", "Statistics", "SteadyStateDiffEq", "StochasticDiffEq", "Test", "Unitful"] +test = ["CairoMakie", "DiffEqCallbacks", "DomainSets", "Graphviz_jll", "HomotopyContinuation", "Logging", "GraphMakie", "NonlinearSolve", "OrdinaryDiffEq", "Plots", "Random", "SafeTestsets", "SciMLBase", "SciMLNLSolve", "StableRNGs", "StaticArrays", "Statistics", "SteadyStateDiffEq", "StochasticDiffEq", "Test", "Unitful"] From 195bac2c17051539a5aa0256c8a1e8f1768d1930 Mon Sep 17 00:00:00 2001 From: Sam Isaacson Date: Mon, 28 Oct 2024 08:49:22 -0400 Subject: [PATCH 2/3] remove bifkit tests --- test/runtests.jl | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/test/runtests.jl b/test/runtests.jl index fd4e69c486..0859ef708e 100644 --- a/test/runtests.jl +++ b/test/runtests.jl @@ -58,7 +58,7 @@ using SafeTestsets, Test end # Tests extensions. - @time @safetestset "BifurcationKit Extension" begin include("extensions/bifurcation_kit.jl") end + # @time @safetestset "BifurcationKit Extension" begin include("extensions/bifurcation_kit.jl") end @time @safetestset "HomotopyContinuation Extension" begin include("extensions/homotopy_continuation.jl") end # @time @safetestset "Structural Identifiability Extension" begin include("extensions/structural_identifiability.jl") end From ce262102c9816804de0be3ffa9cfda3b5d18b1f0 Mon Sep 17 00:00:00 2001 From: Sam Isaacson Date: Mon, 28 Oct 2024 10:06:01 -0400 Subject: [PATCH 3/3] try again --- Project.toml | 11 +++++++++-- 1 file changed, 9 insertions(+), 2 deletions(-) diff --git a/Project.toml b/Project.toml index 468e71ef16..7f7bc6026d 100644 --- a/Project.toml +++ b/Project.toml @@ -28,19 +28,21 @@ Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [weakdeps] +BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665" CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" GraphMakie = "1ecd5474-83a3-4783-bb4f-06765db800d2" HomotopyContinuation = "f213a82b-91d6-5c5d-acf7-10f1c761b327" # StructuralIdentifiability = "220ca800-aa68-49bb-acd8-6037fa93a544" [extensions] -CatalystBifurcationKitExtension = "BifurcationKit" +# CatalystBifurcationKitExtension = "BifurcationKit" CatalystCairoMakieExtension = "CairoMakie" CatalystGraphMakieExtension = "GraphMakie" CatalystHomotopyContinuationExtension = "HomotopyContinuation" # CatalystStructuralIdentifiabilityExtension = "StructuralIdentifiability" [compat] +# BifurcationKit = "0.3" CairoMakie = "0.12" Combinatorics = "1.0.2" DataStructures = "0.18" @@ -69,6 +71,7 @@ Unitful = "1.12.4" julia = "1.10" [extras] +# BifurcationKit = "0f109fa4-8a5d-4b75-95aa-f515264e7665" CairoMakie = "13f3f980-e62b-5c42-98c6-ff1f3baf88f0" DiffEqCallbacks = "459566f4-90b8-5000-8ac3-15dfb0a30def" DomainSets = "5b8099bc-c8ec-5219-889f-1d9e522a28bf" @@ -94,4 +97,8 @@ Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40" Unitful = "1986cc42-f94f-5a68-af5c-568840ba703d" [targets] -test = ["CairoMakie", "DiffEqCallbacks", "DomainSets", "Graphviz_jll", "HomotopyContinuation", "Logging", "GraphMakie", "NonlinearSolve", "OrdinaryDiffEq", "Plots", "Random", "SafeTestsets", "SciMLBase", "SciMLNLSolve", "StableRNGs", "StaticArrays", "Statistics", "SteadyStateDiffEq", "StochasticDiffEq", "Test", "Unitful"] +test = ["CairoMakie", "DiffEqCallbacks", "DomainSets", "Graphviz_jll", + "HomotopyContinuation", "Logging", "GraphMakie", "NonlinearSolve", + "OrdinaryDiffEq", "Plots", "Random", "SafeTestsets", "SciMLBase", + "SciMLNLSolve", "StableRNGs", "StaticArrays", "Statistics", + "SteadyStateDiffEq", "StochasticDiffEq", "Test", "Unitful"]