GraphMakie docs update #1130
GraphMakie docs update #1130
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You need to also update all the places in the current docs where we show graphs to use the new code (preferably dynamically). |
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GLMakie tests are failing? |
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seems something GLFW-related, happening in the docs build too. Will probably debug tomorrow |
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ok |
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Seems like somehow the |
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seems like it was because GLMakie is loaded in that |
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You seem to be getting hit by the same NonlinearSolve related doc build error I was seeing. This seems to have just appeared in the last day or so. |
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Are you referring to the Cassette one? Has anyone upstreamed an issue to Cassette yet? |
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@vyudu maybe just comment out that tutorial for now so we can get this merged? @ChrisRackauckas I don't know if anyone has upstreamed it -- I'm not sure anyone has investigated what is going on beyond seeing the doc build stack trace. |
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I think this needs to merge after #1138 since I fix the other doc build error in that PR |
| @@ -37,7 +37,7 @@ etc). | |||
| - [JumpProcesses.jl](https://github.com/SciML/JumpProcesses.jl) can be used to numerically sample generated Stochastic Chemical Kinetics Jump Process models. | |||
| - Support for [parallelization of all simulations](@ref ode_simulation_performance_parallelisation), including parallelization of [ODE simulations on GPUs](@ref ode_simulation_performance_parallelisation_GPU) using [DiffEqGPU.jl](https://github.com/SciML/DiffEqGPU.jl). | |||
| - [Latexify](https://korsbo.github.io/Latexify.jl/stable/) can be used to [generate LaTeX expressions](@ref visualisation_latex) corresponding to generated mathematical models or the underlying set of reactions. | |||
| - [Graphviz](https://graphviz.org/) can be used to generate and [visualize reaction network graphs](@ref visualisation_graphs) (reusing the Graphviz interface created in [Catlab.jl](https://algebraicjulia.github.io/Catlab.jl/stable/)). | |||
| - The GraphMakie package has [Makie](https://docs.makie.org/stable/) recipes that can be used to generate and [visualize reaction network graphs](@ref visualisation_graphs) | |||
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| - The GraphMakie package has [Makie](https://docs.makie.org/stable/) recipes that can be used to generate and [visualize reaction network graphs](@ref visualisation_graphs) | |
| - [GraphMakie](https://docs.makie.org/stable/) recipes are provided that can be used to generate and [visualize reaction network graphs](@ref visualisation_graphs) |
| @@ -97,6 +91,7 @@ end | |||
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| # Test spatial plotting, using CarioMakie and GraphMakie | |||
| @time @safetestset "Lattice Simulation Plotting" begin include("extensions/lattice_simulation_plotting.jl") end | |||
| @time @safetestset "Graph visualization" begin include("extensions/graphmakie.jl") end | |||
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Isn't this already in the extensions test section? (Which is more appropriate for it.)
Update docs and drop Graphviz dependency. Ran into an issue on my machine where
ExpandTemplateswas hanging for a really long time, so I changed some of the@exampleblocks to just ```julia, but it was still sort of hanging on the machine so not sure what's happening. In any case wanted to see how it did on the CI.