Add API functions for the other kinds of matrixes that a CRN ODE system can be factored into #3762
Workflow file for this run
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| name: Documentation | |
| on: | |
| push: | |
| branches: | |
| - master | |
| tags: '*' | |
| pull_request: | |
| permissions: | |
| actions: write # Allows the workflow to delete old caches created by previous runs, ensuring efficient cache management and preventing the cache from growing indefinitely. https://github.com/julia-actions/cache?tab=readme-ov-file#cache-retention | |
| contents: read | |
| concurrency: | |
| group: docs-${{ github.ref }} # Group name for concurrency control | |
| cancel-in-progress: true # Ensures only one doc build runs at a time for each branch/ref, regardless of the trigger | |
| jobs: | |
| build: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Checkout | |
| uses: actions/checkout@v4 | |
| # Install all required X11 and OpenGL libraries | |
| # These are needed for GLMakie to work in a headless environment | |
| - name: Install binary dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y xvfb libgl1 mesa-utils freeglut3-dev xorg-dev \ | |
| libxrandr-dev libxinerama-dev libxcursor-dev libxi-dev libxext-dev | |
| # # Start Xvfb explicitly instead of using xvfb-run | |
| # # This gives us more control and visibility into the virtual display setup | |
| # - name: Setup virtual framebuffer | |
| # run: | | |
| # # Start Xvfb and wait for it to be ready | |
| # /usr/bin/Xvfb :99 -screen 0 1024x768x24 | |
| # echo "DISPLAY=:99" >> $GITHUB_ENV | |
| - name: Install Julia | |
| uses: julia-actions/setup-julia@latest | |
| with: | |
| version: '1' | |
| # Cache to speed up subsequent runs | |
| - uses: julia-actions/cache@v2 | |
| with: | |
| cache-name: docs-cache | |
| # Install dependencies with the virtual display already running | |
| - name: Install dependencies | |
| run: | | |
| julia --project=docs/ -e ' | |
| ENV["JULIA_PKG_SERVER"] = ""; | |
| using Pkg; | |
| Pkg.develop(PackageSpec(path=pwd())); | |
| Pkg.instantiate()' | |
| # Build documentation with the stable virtual display | |
| - name: Build and deploy | |
| env: | |
| GKSwstype: "100" | |
| GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| DOCUMENTER_KEY: ${{ secrets.DOCUMENTER_KEY }} | |
| run: xvfb-run julia --project=docs --color=yes --code-coverage=user docs/make.jl | |
| - name: Upload site as artifact | |
| uses: actions/upload-artifact@v4 | |
| with: | |
| name: docs-artifact | |
| path: ./docs/build | |
| retention-days: 3 | |
| compression-level: 9 | |
| overwrite: true | |
| - uses: julia-actions/julia-processcoverage@v1 | |
| - uses: codecov/codecov-action@v5 | |
| with: | |
| files: lcov.info | |
| token: ${{ secrets.CODECOV_TOKEN }} | |
| fail_ci_if_error: false | |