diff --git a/README.md b/README.md index abb5cae..cc9ae7a 100644 --- a/README.md +++ b/README.md @@ -12,22 +12,16 @@ Instead the package vagrantDNA estimates the proportion of the nuclear genome is install.packages("devtools") # Install vagrantDNA from GitHub -devtools::install_github("https://github.com/SBCSnicholsLab/pseudogene_quantification/", - subdir = "vagrantDNA") +devtools::install_url("https://github.com/SBCSnicholsLab/pseudogene_quantification/releases/download/v1.1.0/vagrantDNA_1.1.0.tar.gz") # Load package library(vagrantDNA) ``` ### Generate a rainbowplot ``` -download.file("t.ly/6hXO", destfile = "hopper.csv") -hopperDF <- read.table("~/hopper.csv") -res1 <- rainbowPlot(parrotDF, seed = 12345, printout = FALSE, title = "Grasshopper") -## print just the stored estimates (the first two elements of the list) -print(res1[1:2]) -## Inspect the residuals of the lmer model -plot(res1$lmer.model) - +download.file("https://tinyurl.com/4mtrbkzc", destfile = "hopper.csv") +hopperDF <- read.table("hopper.csv") +hopperFit <- rainbowPlot(hopperDF, seed = 12345, printout = FALSE, title = "Grasshopper") ```