pubmon.bib

@article{ma2021evaluation,
  title={Evaluation of some aspects in supervised cell type identification for single-cell RNA-seq: classifier, feature selection, and reference construction},
  author={Ma, Wenjing and Su, Kenong and Wu, Hao},
  journal={Genome Biology},
  volume={22},
  number={1},
  pages={1--23},
  year={2021},
  publisher={Springer},
  url={https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02480-2}
}

@article{zhang2021supergnova,
  title={SUPERGNOVA: local genetic correlation analysis reveals heterogeneous etiologic sharing of complex traits},
  author={Zhang, Yiliang and Lu, Qiongshi and Ye, Yixuan and Huang, Kunling and Liu, Wei and Wu, Yuchang and Zhong, Xiaoyuan and Li, Boyang and Yu, Zhaolong and Travers, Brittany G and others},
  journal={Genome Biology},
  volume={22},
  number={1},
  pages={1--30},
  year={2021},
  publisher={Springer},
  url={https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02478-w}
}

@article{gursoy2021recovering,
  title={Recovering genotypes and phenotypes using allele-specific genes},
  author={G{\"u}rsoy, Gamze and Lu, Nancy and Wagner, Sarah and Gerstein, Mark},
  journal={Genome Biology},
  volume={22},
  number={1},
  pages={1--9},
  year={2021},
  publisher={BioMed Central},
  url={https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02477-x}
}

@article{ahsan2021nanocaller,
  title={NanoCaller for accurate detection of SNPs and indels in difficult-to-map regions from long-read sequencing by haplotype-aware deep neural networks},
  author={Ahsan, Mian Umair and Liu, Qian and Fang, Li and Wang, Kai},
  journal={Genome Biology},
  volume={22},
  number={1},
  pages={1--33},
  year={2021},
  publisher={Springer},
  url={https://genomebiology.biomedcentral.com/articles/10.1186/s13059-021-02472-2}
}


@article{karlsson2022experimental,
  title={Experimental evolution in TP53 deficient gastric organoids recapitulates tumorigenesis},
  author={Karlsson, Kasper and Przybilla, Moritz and Xu, Hang and Kotler, Eran and Karagyozova, Kremena and Sockell, Alexandra and Liu, Katherine and Mah, Amanda and Lo, Yuan-Hung and Lu, Bingxin and others},
  journal={bioRxiv},
  year={2022},
  publisher={Cold Spring Harbor Laboratory}
}

@article{wei2022spatial,
  title={Spatial charting of single-cell transcriptomes in tissues},
  author={Wei, Runmin and He, Siyuan and Bai, Shanshan and Sei, Emi and Hu, Min and Thompson, Alastair and Chen, Ken and Krishnamurthy, Savitri and Navin, Nicholas E},
  journal={Nature Biotechnology},
  pages={1--10},
  year={2022},
  publisher={Nature Publishing Group}
}


@article{gao2022haplotype,
  title={Haplotype-enhanced inference of somatic copy number profiles from single-cell transcriptomes},
  author={Gao, Teng and Soldatov, Ruslan and Sarkar, Hirak and Kurkiewicz, Adam and Biederstedt, Evan and Loh, Po-Ru and Kharchenko, Peter},
  journal={bioRxiv},
  year={2022},
  publisher={Cold Spring Harbor Laboratory}
}


@article{williams2021evolutionary,
  title={Evolutionary tracking of cancer haplotypes at single-cell resolution},
  author={Williams, Marc J and Funnell, Tyler and O'Flanagan, Ciara H and McPherson, Andrew and Salehi, Sohrab and V{\'a}zquez-Garc{\'\i}a, Ignacio and Kabeer, Farhia and Lee, Hakwoo and Masud, Tehmina and Eirew, Peter and others},
  journal={bioRxiv},
  year={2021},
  publisher={Cold Spring Harbor Laboratory}
}