04-04-spatial.Rmd

## Spatial transcriptomics

- 202109 Read in depth (lead by xianjie)

**[The spatial landscape of clonal somatic mutations in benign and malignant tissue](https://www.biorxiv.org/content/10.1101/2021.07.12.452018v1.full)[@erickson2021spatial]**

Keywords: CNV


**[Multimodal analysis of composition and spatial architecture in human squamous cell carcinoma](https://www.sciencedirect.com/science/article/pii/S0092867420306723)[@zhang2021supergnova]**

Keywords: alignment of scRNA AND ST


- 2022 spatial and CNV

**[Statistical and machine learning methods for spatially resolved transcriptomics data analysis](https://genomebiology.biomedcentral.com/articles/10.1186/s13059-022-02653-7)[@zeng2022statistical]**


**[STARCH: copy number and clone inference from spatial transcriptomics data](https://pubmed.ncbi.nlm.nih.gov/33022659/)[@elyanow2021starch]**

**[The spatial landscape of clonal somatic mutations in benign and malignant tissue](https://www.biorxiv.org/content/10.1101/2021.07.12.452018v1.abstract)[@erickson2021spatial]**

Keywords: spatial; CNV