validate_and_release.yml

# - validate the protocol and activities in the repo with reproschema.py
# - triggers a release when a github release is published
name: validate and release

on:
  push:
    branches:
      - main
  pull_request:
    branches: ['*']
  # Allow to trigger the generation of release files automatically
  workflow_dispatch:
    inputs:
      version:
        description: 'version number'
        required: true
        type: string

jobs:
  validate:
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
    - name: Set up Python
      uses: actions/setup-python@v5
      with:
        python-version: 3.12
    - name: Install dependencies
      # TODO This installs reproschema from source and not from pypi
      # This may not be the optimal way of doing it.
      run: |
        python -m pip install --upgrade pip setuptools
        pip install git+https://github.com/ReproNim/reproschema-py.git
    - name: Validate content
      run: |
        python scripts/jsonParser.py
        reproschema validate examples

  release:
    needs: [validate]
    if: github.event_name == 'workflow_dispatch'
    runs-on: ubuntu-latest
    steps:
    - uses: actions/checkout@v4
    - name: Set up Python
      uses: actions/setup-python@v5
      with:
        python-version: 3.12
    - name: Install dependencies
      run: |
        python -m pip install --upgrade pip setuptools
        pip install linkml astor pre-commit
        pip install git+https://github.com/ReproNim/reproschema-py.git
    - name: Generate pydantic  using linml and fixing it with reproschema specific script
      run: |
        gen-pydantic --pydantic-version 2 linkml-schema/reproschema.yaml > reproschema_model.py
        python scripts/fix_pydantic.py reproschema_model.py
        pre-commit run --files reproschema_model.py || true
    - name: Generate jsonld format using linkml
      run: |
        gen-jsonld --context https://raw.githubusercontent.com/ReproNim/reproschema/main/contexts/reproschema linkml-schema/reproschema.yaml > reproschema.jsonld
    - name: Generate n-triples and turtle formats using reproschema
      run: |
        reproschema convert --format n-triples reproschema.jsonld > reproschema.nt
        reproschema convert --format turtle reproschema.jsonld > reproschema.ttl
    - name: Make a release
      run: |
        echo "Making a release ${{ inputs.version }}"
        mkdir releases/${{ inputs.version }}
        cp contexts/reproschema releases/${{ inputs.version }}/reproschema
        mv reproschema_model.py releases/${{ inputs.version }}/reproschema_model.py
        mv reproschema.jsonld releases/${{ inputs.version }}/reproschema.jsonld
        mv reproschema.nt releases/${{ inputs.version }}/reproschema.nt
        mv reproschema.ttl releases/${{ inputs.version }}/reproschema.ttl

    -   name: Open pull requests to add files
        uses: peter-evans/create-pull-request@v7
        with:
            commit-message: "[REL] adding files to for release ${{ inputs.version }}"
            base: main
            token: ${{ secrets.GITHUB_TOKEN }}
            delete-branch: true
            title: "[REL] adding files to for release ${{ inputs.version }}"
            body: done via this [GitHub Action](https://github.com/${{ github.repository_owner }}/reproschema/blob/main/.github/workflows/validate_and_release.yml)