From a14835eb8c331c1d81e5d857361cf67b6c1d676f Mon Sep 17 00:00:00 2001
From: StephenNneji <34302892+StephenNneji@users.noreply.github.com>
Date: Wed, 26 Jun 2024 09:56:50 +0100
Subject: [PATCH] Adds manifest and modifies build files (#37)

---
 .github/workflows/build_wheel.yml | 16 +++++++---------
 MANIFEST.in                       |  5 +++++
 cpp/rat.cpp                       |  2 +-
 pyproject.toml                    | 16 ----------------
 setup.py                          |  4 +++-
 5 files changed, 16 insertions(+), 27 deletions(-)
 create mode 100644 MANIFEST.in

diff --git a/.github/workflows/build_wheel.yml b/.github/workflows/build_wheel.yml
index e7d0096d..db91cf86 100644
--- a/.github/workflows/build_wheel.yml
+++ b/.github/workflows/build_wheel.yml
@@ -1,7 +1,6 @@
 name: Build wheel
 
-on:
-  workflow_dispatch:
+on: [workflow_dispatch, workflow_call]
 
 concurrency:
   group: ${{ github.head_ref || github.run_id }}
@@ -10,17 +9,14 @@ concurrency:
 jobs:
   build:
     strategy:
-      fail-fast: false
+      fail-fast: true
       matrix:
-        platform: [windows-latest, ubuntu-latest, macos-latest, macos-14]
+        platform: [windows-latest, ubuntu-latest, macos-13, macos-14]
     env:
       CIBW_SKIP: 'pp*'
       CIBW_ARCHS: 'auto64'
       CIBW_PROJECT_REQUIRES_PYTHON: '>=3.9'
       CIBW_TEST_REQUIRES: 'pytest'
-      # Appends the project path since build is not done in the project directory
-      CIBW_TEST_COMMAND: 'pytest {project}/tmp/tests'
-
     defaults:
       run:
         shell: bash -l {0}
@@ -36,7 +32,7 @@ jobs:
         with:
           python-version: "3.x"
       - name: Install OMP (MacOS Intel) 
-        if: matrix.platform == 'macos-latest'
+        if: matrix.platform == 'macos-13'
         run: |
           brew install llvm libomp
           echo "export CC=/usr/local/opt/llvm/bin/clang" >> ~/.bashrc
@@ -64,8 +60,10 @@ jobs:
           # of local package.
           mkdir tmp
           cp -r tests tmp/tests/
+          CIBW_TEST_COMMAND='cd ${pwd}/tmp && python -m pytest tests'
+          echo "CIBW_TEST_COMMAND=${CIBW_TEST_COMMAND}" >> $GITHUB_ENV
           python -m pip install cibuildwheel==2.16.5
-          python -m cibuildwheel --output-dir wheelhouse
+          python -m cibuildwheel --output-dir ./wheelhouse 
       - uses: actions/upload-artifact@v4
         with:
           name: wheels-${{ runner.os }}-${{ strategy.job-index }}
diff --git a/MANIFEST.in b/MANIFEST.in
new file mode 100644
index 00000000..086d5f71
--- /dev/null
+++ b/MANIFEST.in
@@ -0,0 +1,5 @@
+include README.md
+recursive-include cpp/RAT *
+prune tests
+prune */__pycache__ 
+global-exclude .git
diff --git a/cpp/rat.cpp b/cpp/rat.cpp
index b84bb375..81c26046 100644
--- a/cpp/rat.cpp
+++ b/cpp/rat.cpp
@@ -150,7 +150,7 @@ class DylibEngine
             return py::make_tuple(output, roughness);    
 
         }catch (const dylib::symbol_error &) {
-            throw std::runtime_error("failed to get dynamic library symbol for ***functionName");
+            throw std::runtime_error("failed to get dynamic library symbol for " + functionName);
         }        
     };
 };
diff --git a/pyproject.toml b/pyproject.toml
index 29d309a0..b91bf7dc 100644
--- a/pyproject.toml
+++ b/pyproject.toml
@@ -6,19 +6,3 @@ requires = [
 ]
 build-backend = 'setuptools.build_meta'
 
-dependencies = [
-    'numpy >= 1.20',
-    'prettytable>=3.9.0',
-    'pydantic>=2.7.2',
-    'StrEnum>=0.4.15; python_version<"3.11"',
-]
-
-[optional-dependencies]
-Dev = ['pytest>=7.4.0', 'pytest-cov>=4.1.0']
-Matlab_latest = ['matlabengine']
-Matlab-2023b = ['matlabengine==23.2.1']
-Matlab-2023a = ['matlabengine==9.14.3']
-Matlab-2022b = ['matlabengine==9.13.9']
-Matlab-2022a = ['matlabengine==9.12.19']
-Matlab-2021b = ['matlabengine==9.11.21']
-Matlab-2021a = ['matlabengine==9.10.3']
diff --git a/setup.py b/setup.py
index cca3c73b..af559726 100644
--- a/setup.py
+++ b/setup.py
@@ -152,9 +152,11 @@ def build_libraries(self, libraries):
     author_email='',
     url='https://github.com/RascalSoftware/python-RAT',
     description='Python extension for the Reflectivity Analysis Toolbox (RAT)',
+    long_description=open('README.md').read(),
+    long_description_content_type='text/markdown',
     packages=find_packages(),
     include_package_data=True,
-    package_data={'': [get_shared_object_name(libevent[0])]},
+    package_data={'': [get_shared_object_name(libevent[0])], 'RAT.examples': ["data/*.dat"]},
     cmdclass={'build_clib': BuildClib, 'build_ext': BuildExt},
     libraries=[libevent],
     ext_modules=ext_modules,