pyproject.toml

[build-system]
requires = ["scikit-build-core", "pybind11", "setuptools_scm"]
build-backend = "scikit_build_core.build"


[project]
name = "pymem3dg"
authors = [
    { name = "Cuncheng Zhu", email = "cuzhu@ucsd.edu" },
    { name = "Christopher T. Lee", email = "ctlee@ucsd.edu" },
]
description = "PyMem3DG: Membrane Dynamics in 3D using Discrete Differential Geometry"
readme = "README.md"
requires-python = ">=3.7"
keywords = [
    "meshing",
    "membrane mechanics",
    "discrete differential geometry",
    "Helfrich",
]
license = { text = "Mozilla Public License 2.0 (MPL 2.0)" }
classifiers = [
    "Development Status :: 3 - Alpha",
    "Environment :: Console",
    "Intended Audience :: Science/Research",
    "License :: OSI Approved :: Mozilla Public License 2.0 (MPL 2.0)",
    "Natural Language :: English",
    "Operating System :: OS Independent",
    "Programming Language :: C++",
    "Programming Language :: Python :: 3 :: Only",
    "Programming Language :: Python :: Implementation :: CPython",
    "Topic :: Scientific/Engineering :: Chemistry",
    "Topic :: Scientific/Engineering :: Mathematics",
    "Topic :: Scientific/Engineering :: Physics",
    "Topic :: Scientific/Engineering :: Visualization",
]
dependencies = [
    "numpy",
    "scipy",
    "netCDF4",
    "polyscope",
    "matplotlib",
    "seaborn",
    "xarray",
]
dynamic = ["version"]

[project.optional-dependencies]
docs = [
    "docutils",
    "jupyter_sphinx",
    "markupsafe",
    "nbsphinx",
    "sphinx",
    "sphinx-issues",
    "sphinx_rtd_theme",
    "sphinx-mdinclude"
]
tests = ["pytest"]


[tool.scikit-build]
cmake.args = ["-DBUILD_PYMEM3DG=ON", "-DSUITESPARSE=OFF"]
wheel.packages = ["python_src/pymem3dg"]
metadata.version.provider = "scikit_build_core.metadata.setuptools_scm"
install.components = ["PythonModule"]
install.strip = false


[tool.setuptools_scm] # Section required
version_scheme = "guess-next-dev"
local_scheme = "node-and-date"

[tool.pytest.ini_options]
testpaths = ["tests"]
filterwarnings = [
    "error",
    # Produced by seaborn
    "ignore: distutils Version classes are deprecated. Use packaging.version instead.",
]


[tool.codespell]
skip = '*.ply,*.nc'
quiet-level = 3
ignore-words-list = "isplay,previouse,protol"