From 15415733c0421cba67adfd932f249694b608e141 Mon Sep 17 00:00:00 2001
From: "Brian M. Schilder" <34280215+bschilder@users.noreply.github.com>
Date: Tue, 28 May 2024 13:49:53 +0100
Subject: [PATCH] fix uce with alan's suggestions

---
 inst/conda/uce.yml     | 20 ++++++++++----------
 inst/conda/uce_mac.yml | 22 ++++++++++++++++++++++
 2 files changed, 32 insertions(+), 10 deletions(-)
 create mode 100644 inst/conda/uce_mac.yml

diff --git a/inst/conda/uce.yml b/inst/conda/uce.yml
index 6977cf4..ab0a9d6 100644
--- a/inst/conda/uce.yml
+++ b/inst/conda/uce.yml
@@ -1,20 +1,20 @@
 name: uce
 channels:
   - conda-forge
-  - plotly 
-  - pytorch-nightly 
-  - nodefaults  
+  - defaults
 dependencies:
-  - numpy
-  - scipy
-  - pandas
-  - tqdm
-  - pytorch
-  - torchvision 
-  - torchaudio
+  - python=3.9
+  - pandas=1.3.0
+  - scikit-learn=0.24.2
+  - numpy=1.21.0
+  - tqdm=4.61.2
   - scanpy
+  - igraph-python
+  - leidenalg
   - accelerate
   - requests
   - urllib3==1.26.6  
   - ipykernel 
   - pip 
+  - pip:
+    - gdown
diff --git a/inst/conda/uce_mac.yml b/inst/conda/uce_mac.yml
new file mode 100644
index 0000000..087392e
--- /dev/null
+++ b/inst/conda/uce_mac.yml
@@ -0,0 +1,22 @@
+name: uce
+channels:
+  - conda-forge
+  - plotly 
+  - pytorch-nightly 
+  - nodefaults  
+dependencies:
+  - numpy
+  - scipy
+  - pandas
+  - tqdm
+  - pytorch
+  - torchvision 
+  - torchaudio
+  - scanpy
+  - igraph-python
+  - leidenalg
+  - accelerate
+  - requests
+  - urllib3==1.26.6  
+  - ipykernel 
+  - pip