diff --git a/environment.yml b/environment.yml index b296912..d06ba0c 100644 --- a/environment.yml +++ b/environment.yml @@ -1,16 +1,16 @@ name: arcas-hla channels: - bioconda +- conda-forge dependencies: -- bedtools==2.26.0 +- bedtools==2.31.1 +- biopython==1.83 - kallisto==0.44.0 -- pip==23.3.1 +- numpy==1.26.4 +- pandas==2.2.0 +- pip==24.0 +- pyarrow==15.0.0 +- pytest==8.0.0 - python==3.10.0 -- samtools==1.11 -- pip: - - biopython==1.83 - - numpy==1.26.3 - - pandas==2.2.0 - - pyarrow==15.0.0 - - pytest==8.0.0 - - scipy==1.12.0 +- samtools==1.19.2 +- scipy==1.12.0