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Add mechanism for CellCounts to get all combinations for set of markers #30
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kevinushey
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ghost
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Consists of 4 commit(s). Commit information: Commit id: c1f953e Commit message: roxygen changed its mind about indentation again, i guess Committed by Kevin Ushey <kevinushey at gmail.com> Commit date: 2014-04-04T11:22:43-07:00 Commit id: effa131 Commit message: Support '*' expansion in CellCounts (#30) Committed by Kevin Ushey <kevinushey at gmail.com> Commit date: 2014-04-04T11:23:54-07:00 Commit id: d095642 Commit message: Merge branch 'master' of https://github.com/RGLab/COMPASS Committed by Kevin Ushey <kevinushey at gmail.com> Commit date: 2014-04-04T11:24:12-07:00 Commit id: 1ffd1bb Commit message: Update version Committed by Kevin Ushey <kevinushey at gmail.com> Commit date: 2014-04-04T11:25:00-07:00 From: Bioconductor Git-SVN Bridge <[email protected]> git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/COMPASS@88433 bc3139a8-67e5-0310-9ffc-ced21a209358
Added with #30, but more work would need to be done to combine this with |
mikejiang
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Consists of 4 commit(s). Commit information: Commit id: c1f953e Commit message: roxygen changed its mind about indentation again, i guess Committed by Kevin Ushey <kevinushey at gmail.com> Commit date: 2014-04-04T11:22:43-07:00 Commit id: effa131 Commit message: Support '*' expansion in CellCounts (#30) Committed by Kevin Ushey <kevinushey at gmail.com> Commit date: 2014-04-04T11:23:54-07:00 Commit id: d095642 Commit message: Merge branch 'master' of https://github.com/RGLab/COMPASS Committed by Kevin Ushey <kevinushey at gmail.com> Commit date: 2014-04-04T11:24:12-07:00 Commit id: 1ffd1bb Commit message: Update version Committed by Kevin Ushey <kevinushey at gmail.com> Commit date: 2014-04-04T11:25:00-07:00 From: Bioconductor Git-SVN Bridge <[email protected]> git-svn-id: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/COMPASS@88433 bc3139a8-67e5-0310-9ffc-ced21a209358
gfinak
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Consists of 4 commit(s). Commit information: Commit id: c1f953e Commit message: roxygen changed its mind about indentation again, i guess Committed by Kevin Ushey <kevinushey at gmail.com> Commit date: 2014-04-04T11:22:43-07:00 Commit id: effa131 Commit message: Support '*' expansion in CellCounts (#30) Committed by Kevin Ushey <kevinushey at gmail.com> Commit date: 2014-04-04T11:23:54-07:00 Commit id: d095642 Commit message: Merge branch 'master' of https://github.com/RGLab/COMPASS Committed by Kevin Ushey <kevinushey at gmail.com> Commit date: 2014-04-04T11:24:12-07:00 Commit id: 1ffd1bb Commit message: Update version Committed by Kevin Ushey <kevinushey at gmail.com> Commit date: 2014-04-04T11:25:00-07:00 From: Bioconductor Git-SVN Bridge <[email protected]> git-svn-id: file:///home/git/hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/COMPASS@88433 bc3139a8-67e5-0310-9ffc-ced21a209358
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E.g.,
CellCounts(x, "A*B")
should be identical to
CellCounts(x, c("A&B", "A&!B", "!A&B", "!A&!B"))
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