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Metadata conversion rules #18

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2 tasks done
hechth opened this issue Jun 20, 2024 · 0 comments · Fixed by #29
Closed
2 tasks done

Metadata conversion rules #18

hechth opened this issue Jun 20, 2024 · 0 comments · Fixed by #29
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@hechth
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hechth commented Jun 20, 2024

Strip trailing/starting whitespaces from File name

  • sampleName = 'File namewith all spaces replaced by_`
  • sequenceIdentifier = File name with last _XZY stripped away.
  • subjectIdentifier = File name with last XZY stripped away and prepended XZY removed
  • class = Class ID
  • injectionOrder = Analytical order
  • sampleType = Type
  • batch = Batch
  • localOrder = number XYZ in trailing _XYZ

Furthermore, do we want to try to validate some inputs to try to spot errors in the files?

Do we want to validate whether the prefixed number before the first underscore fits the analyticalOrder?
validate sampleType column for use in WaveICA?

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