Add EDAM identifiers to Galaxy tools

[hechth]

Add EDAM identifiers to tools in order to be detectable on bio.tools.

Other resources:

• https://academic.oup.com/bioinformatics/article/29/10/1325/255660
• https://elixir-europe.org/about-us/commissioned-services/registry-tools
• https://academic.oup.com/gigascience/article/6/6/gix022/3573849

Tools for which to add identifiers

• Add EDAM identifiers to recetox-aplcms suite #368
• Add EDAM identifiers to matchms suite #370
• Add EDAM identifiers to RAMClustR and RAMClustR define experiment #369
• Add EDAM identifiers to WaveICA (done in Updated waveica for new outputs from recetox-aplcms #378)
• Add EDAM identifiers to biotransformer #380
• Add EDAM identifiers to retip #417
• Add EDAM identifiers to recetox-xMSannotator #383
• Add EDAM identifiers to MSFinder #418
• Add EDAM identifiers to MSMetaEnhancer #371
• Add EDAM identifiers to RIAssigner #373
• Add missing EDAM terms #374
• bio.tools EDAM workflow4metabolomics/tools-metabolomics#169

[hechth]

recetox-aplcms

Input Data

• mass spectrometry data (2536)

Format

• mzML (3244)

Operation

• filtering (3937) (noise removal)
• feature extraction (generate features, recovery)
• peak detection (3215) (generate features, recovery)
• chromatographic alignment (3628) (rt correction step)
• alignment (2928) (alignment step)
• Qauntification (3799) (generate features, recovery)

Output

• feature table (1270)
• alignment (1916)
• expression data (2603)

[hechth]

Terms to add

• Exposomics (topic)
• peak table (-> expression data)
• MSP (-> mass spectrometry data format)
• Parquet format