pdb2sequence.cc

//
// Copyright (c) 2002 The Regents of the University of California.
// All rights reserved.
// 
// Redistribution and use in source and binary forms, with or without
// modification, are permitted provided that the following conditions
// are met:
//   1. Redistributions of source code must retain the above copyright
//      notice, this list of conditions, and the following disclaimer.
//   2. Redistributions in binary form must reproduce the above
//      copyright notice, this list of conditions, and the following
//      disclaimer in the documentation and/or other materials provided
//      with the distribution.
//   3. Redistributions must acknowledge that this software was
//      originally developed by the UCSF Computer Graphics Laboratory
//      under support by the NIH National Center for Research Resources,
//      grant P41-RR01081.
// 
// THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDER "AS IS" AND ANY
// EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT LIMITED TO, THE
// IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS FOR A PARTICULAR
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// CONSEQUENTIAL DAMAGES (INCLUDING, BUT NOT LIMITED TO, PROCUREMENT
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// EVEN IF ADVISED OF THE POSSIBILITY OF SUCH DAMAGE.

#include <biopolymer.h>
#include <load_pdb.h>
#include <residue_names.h>
#include <mol2sequence.h>

namespace minrms {
const char g_version_string[] = "0.99";
const char g_date_string[]    = "<00/1/30>";
}

using namespace minrms;

int
main()
{
  Biopolymer m;
  cin >> m;
  NameCodeLookup::Init();
  string sequence = Mol2Sequence(m);
  cout << sequence << endl;
}