add estimate_sigma function to threshold features #207
Workflow file for this run
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| name: Test | |
| on: | |
| push: | |
| branches: | |
| - master | |
| - v1.** | |
| pull_request: | |
| branches: | |
| - master | |
| - v1.** | |
| jobs: | |
| test_pywavelets_linux: | |
| name: linux-cp${{ matrix.python-version }}-${{ matrix.OPTIONS_NAME }} | |
| runs-on: ubuntu-latest | |
| env: | |
| MPLBACKEND: Agg | |
| CYTHON_TRACE: 1 | |
| CYTHONSPEC: cython | |
| NUMPY_MIN: numpy==1.22.4 | |
| CYTHON_MIN: cython==0.29.35 | |
| SCIPY_MIN: scipy==1.8.0 | |
| strategy: | |
| # Ensure that a wheel builder finishes even if another fails | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.9, '3.10', '3.11', '3.12'] | |
| MINIMUM_REQUIREMENTS: [0] | |
| USE_SCIPY: [0] | |
| USE_SDIST: [0] | |
| REFGUIDE_CHECK: [0] | |
| PIP_FLAGS: [""] | |
| OPTIONS_NAME: ["default"] | |
| include: | |
| - platform_id: manylinux_x86_64 | |
| python-version: 3.9 | |
| MINIMUM_REQUIREMENTS: 1 | |
| OPTIONS_NAME: "minimum-req" | |
| - platform_id: manylinux_x86_64 | |
| python-version: 3.9 | |
| USE_SCIPY: 1 | |
| OPTIONS_NAME: "with-scipy" | |
| - platform_id: manylinux_x86_64 | |
| python-version: 3.9 | |
| USE_SDIST: 1 | |
| OPTIONS_NAME: "install-from-sdist" | |
| - platform_id: manylinux_x86_64 | |
| python-version: '3.12' | |
| PIP_FLAGS: "--pre" | |
| OPTIONS_NAME: "pre-releases" | |
| steps: | |
| - name: Checkout PyWavelets | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version}} | |
| allow-prereleases: true | |
| - name: Build package | |
| env: | |
| VERSION: ${{ matrix.python-version }} | |
| MINIMUM_REQUIREMENTS: ${{ matrix.MINIMUM_REQUIREMENTS }} | |
| PIP_FLAGS: ${{ matrix.PIP_FLAGS }} | |
| USE_SDIST: ${{ matrix.USE_SDIST }} | |
| USE_SCIPY: ${{ matrix.USE_SCIPY }} | |
| REFGUIDE_CHECK: ${{ matrix.REFGUIDE_CHECK }} | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| # ccache -s | |
| which python | |
| python --version | |
| # sudo apt-get install libatlas-base-dev | |
| pip install --upgrade pip build | |
| # Set numpy version first, other packages link against it | |
| if [ "${MINIMUM_REQUIREMENTS}" == "1" ]; then | |
| pip install ${CYTHON_MIN} | |
| pip install ${NUMPY_MIN} | |
| if [ "${USE_SCIPY}" == "1" ]; then pip install ${SCIPY_MIN}; fi | |
| else | |
| pip install ${PIP_FLAGS} cython | |
| pip install ${PIP_FLAGS} numpy | |
| if [ "${USE_SCIPY}" == "1" ]; then pip install ${PIP_FLAGS} scipy; fi | |
| fi | |
| pip install ${PIP_FLAGS} matplotlib pytest | |
| set -o pipefail | |
| if [ "${USE_SDIST}" == "1" ]; then | |
| python -m build --sdist | |
| pip install dist/pyw*.tar.gz -v | |
| elif [ "${REFGUIDE_CHECK}" == "1" ]; then | |
| pip install sphinx numpydoc | |
| pip install . -v | |
| else | |
| pip install . -v | |
| fi | |
| - name: Run tests | |
| env: | |
| USE_SDIST: ${{ matrix.USE_SDIST }} | |
| REFGUIDE_CHECK: ${{ matrix.REFGUIDE_CHECK }} | |
| run: | | |
| set -o pipefail | |
| # Move out of source directory to avoid finding local pywt | |
| pushd demo | |
| if [ "${USE_SDIST}" == "1" ]; then | |
| pytest --pyargs pywt | |
| python ../pywt/tests/test_doc.py | |
| elif [ "${REFGUIDE_CHECK}" == "1" ]; then | |
| python util/refguide_check.py --doctests | |
| else | |
| pytest --pyargs pywt | |
| fi | |
| popd | |
| test_pywavelets_macos: | |
| name: macos-cp${{ matrix.python-version }}-${{ matrix.OPTIONS_NAME }} | |
| runs-on: macos-latest | |
| env: | |
| MPLBACKEND: Agg | |
| CYTHON_TRACE: 1 | |
| CYTHONSPEC: cython | |
| NUMPY_MIN: numpy==1.22.4 | |
| CYTHON_MIN: cython==0.29.35 | |
| SCIPY_MIN: scipy==1.8.0 | |
| strategy: | |
| # Ensure that a wheel builder finishes even if another fails | |
| fail-fast: false | |
| matrix: | |
| python-version: [3.9, '3.12'] | |
| MINIMUM_REQUIREMENTS: [0] | |
| USE_SCIPY: [0] | |
| USE_SDIST: [0] | |
| REFGUIDE_CHECK: [0] | |
| PIP_FLAGS: [""] | |
| OPTIONS_NAME: ["default"] | |
| include: | |
| - python-version: '3.9' | |
| MINIMUM_REQUIREMENTS: 1 | |
| OPTIONS_NAME: "osx-minimum-req" | |
| - python-version: '3.12' | |
| PIP_FLAGS: "--pre" | |
| OPTIONS_NAME: "pre-releases" | |
| steps: | |
| - name: Checkout PyWavelets | |
| uses: actions/checkout@v4 | |
| - name: Setup Python | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: ${{ matrix.python-version}} | |
| allow-prereleases: true | |
| - name: Build package | |
| env: | |
| VERSION: ${{ matrix.python-version }} | |
| MINIMUM_REQUIREMENTS: ${{ matrix.MINIMUM_REQUIREMENTS }} | |
| PIP_FLAGS: ${{ matrix.PIP_FLAGS }} | |
| USE_SDIST: ${{ matrix.USE_SDIST }} | |
| USE_SCIPY: ${{ matrix.USE_SCIPY }} | |
| REFGUIDE_CHECK: ${{ matrix.REFGUIDE_CHECK }} | |
| CC: /usr/bin/clang | |
| CXX: /usr/bin/clang++ | |
| run: | | |
| uname -a | |
| df -h | |
| ulimit -a | |
| which python | |
| python --version | |
| pip install --upgrade pip build | |
| # Set numpy version first, other packages link against it | |
| if [ "${MINIMUM_REQUIREMENTS}" == "1" ]; then | |
| pip install ${CYTHON_MIN} ${NUMPY_MIN} | |
| if [ "${USE_SCIPY}" == "1" ]; then pip install ${SCIPY_MIN}; fi | |
| else | |
| pip install ${PIP_FLAGS} cython numpy | |
| if [ "${USE_SCIPY}" == "1" ]; then pip install ${PIP_FLAGS} scipy; fi | |
| fi | |
| pip install ${PIP_FLAGS} matplotlib pytest | |
| set -o pipefail | |
| if [ "${USE_SDIST}" == "1" ]; then | |
| python -m build --sdist | |
| pip install pywavelets* -v | |
| elif [ "${REFGUIDE_CHECK}" == "1" ]; then | |
| pip install sphinx numpydoc | |
| pip install . -v | |
| else | |
| pip install . -v | |
| fi | |
| - name: Run tests | |
| env: | |
| PIP_FLAGS: ${{ matrix.PIP_FLAGS }} | |
| USE_SDIST: ${{ matrix.USE_SDIST }} | |
| REFGUIDE_CHECK: ${{ matrix.REFGUIDE_CHECK }} | |
| run: | | |
| # Move out of source directory to avoid finding local pywt | |
| pushd demo | |
| if [ "${USE_SDIST}" == "1" ]; then | |
| pytest --pyargs pywt | |
| python ../pywt/tests/test_doc.py | |
| elif [ "${REFGUIDE_CHECK}" == "1" ]; then | |
| python util/refguide_check.py --doctests | |
| else | |
| pytest --pyargs pywt | |
| fi | |
| popd |