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I started a branch to migrate to UV for our package management (kt/uv), but found there are issues with installing a few of our dependencies with UV. They have been identified to the UV developers in the following tickets (astral-sh/uv#8429) , (astral-sh/uv#7525).
The issue is associated with installing snakemake (snakemake/snakemake-executor-plugin-slurm#157) so there wouldnt be a good workaround besides using mamba for snakemake. They identify one workaround to get around the datrie dependency but I found that there are other installation issues as well after that.
The bug was identified only a few weeks ago so I imagine they'll patch it soon. Let's just keep an eye on those tickets to see when they are fixed.... we can switch then, since it is so dang fast.
The text was updated successfully, but these errors were encountered:
Feature Request
I started a branch to migrate to UV for our package management (kt/uv), but found there are issues with installing a few of our dependencies with UV. They have been identified to the UV developers in the following tickets (astral-sh/uv#8429) , (astral-sh/uv#7525).
The issue is associated with installing snakemake (snakemake/snakemake-executor-plugin-slurm#157) so there wouldnt be a good workaround besides using mamba for snakemake. They identify one workaround to get around the
datrie
dependency but I found that there are other installation issues as well after that.The bug was identified only a few weeks ago so I imagine they'll patch it soon. Let's just keep an eye on those tickets to see when they are fixed.... we can switch then, since it is so dang fast.
The text was updated successfully, but these errors were encountered: