[repo-helper] Configuration Update (#36)

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PyMassSpec · Feb 5, 2024 · 09beda5 · 09beda5
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diff --git a/.github/workflows/docs_test_action.yml b/.github/workflows/docs_test_action.yml
@@ -17,7 +17,7 @@ jobs:
     runs-on: ubuntu-latest
     steps:
       - name: Checkout 🛎️
-        uses: "actions/checkout@v2"
+        uses: "actions/checkout@v4"
 
       - name: Check for changed files
         uses: dorny/paths-filter@v2

diff --git a/.github/workflows/flake8.yml b/.github/workflows/flake8.yml
@@ -16,11 +16,11 @@ permissions:
 jobs:
   Run:
     name: "Flake8"
-    runs-on: "ubuntu-18.04"
+    runs-on: "ubuntu-20.04"
 
     steps:
       - name: Checkout 🛎️
-        uses: "actions/checkout@v2"
+        uses: "actions/checkout@v4"
 
       - name: Check for changed files
         uses: dorny/paths-filter@v2
@@ -33,7 +33,7 @@ jobs:
 
       - name: Setup Python 🐍
         if: steps.changes.outputs.code == 'true'
-        uses: "actions/setup-python@v2"
+        uses: "actions/setup-python@v5"
         with:
           python-version: "3.6"
 
@@ -43,7 +43,7 @@ jobs:
           python -VV
           python -m site
           python -m pip install --upgrade pip setuptools wheel
-          python -m pip install tox
+          python -m pip install tox~=3.0
 
       - name: "Run Flake8"
         if: steps.changes.outputs.code == 'true'

diff --git a/.github/workflows/mypy.yml b/.github/workflows/mypy.yml
@@ -25,7 +25,7 @@ jobs:
 
     steps:
       - name: Checkout 🛎️
-        uses: "actions/checkout@v2"
+        uses: "actions/checkout@v4"
 
       - name: Check for changed files
         uses: dorny/paths-filter@v2
@@ -38,7 +38,7 @@ jobs:
 
       - name: Setup Python 🐍
         if: steps.changes.outputs.code == 'true'
-        uses: "actions/setup-python@v2"
+        uses: "actions/setup-python@v5"
         with:
           python-version: "3.6"
 
@@ -47,7 +47,7 @@ jobs:
           python -VV
           python -m site
           python -m pip install --upgrade pip setuptools wheel
-          python -m pip install --upgrade tox virtualenv!=20.16.0
+          python -m pip install --upgrade tox~=3.0 virtualenv!=20.16.0
 
       - name: "Run mypy"
         if: steps.changes.outputs.code == 'true'

diff --git a/.github/workflows/python_ci.yml b/.github/workflows/python_ci.yml
@@ -35,7 +35,7 @@ jobs:
 
     steps:
       - name: Checkout 🛎️
-        uses: "actions/checkout@v2"
+        uses: "actions/checkout@v4"
 
       - name: Check for changed files
         if: startsWith(github.ref, 'refs/tags/') != true
@@ -50,7 +50,7 @@ jobs:
       - name: Setup Python 🐍
         id: setup-python
         if: ${{ steps.changes.outputs.code == 'true' || steps.changes.outcome == 'skipped' }}
-        uses: "actions/setup-python@v2"
+        uses: "actions/setup-python@v5"
         with:
           python-version: "${{ matrix.config.python-version }}"
 
@@ -60,14 +60,14 @@ jobs:
           python -VV
           python -m site
           python -m pip install --upgrade pip setuptools wheel
-          python -m pip install --upgrade tox virtualenv!=20.16.0
+          python -m pip install --upgrade tox~=3.0 virtualenv!=20.16.0
 
       - name: "Run Tests for Python ${{ matrix.config.python-version }}"
         if: steps.setup-python.outcome == 'success'
         run: python -m tox -e "${{ matrix.config.testenvs }}" -s false
 
       - name: "Upload Coverage 🚀"
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v3
         if: ${{ always() && steps.setup-python.outcome == 'success' }}
         with:
           name: "coverage-${{ matrix.config.python-version }}"

diff --git a/.github/workflows/python_ci_linux.yml b/.github/workflows/python_ci_linux.yml
@@ -36,7 +36,7 @@ jobs:
 
     steps:
       - name: Checkout 🛎️
-        uses: "actions/checkout@v2"
+        uses: "actions/checkout@v4"
 
       - name: Check for changed files
         if: startsWith(github.ref, 'refs/tags/') != true
@@ -51,7 +51,7 @@ jobs:
       - name: Setup Python 🐍
         id: setup-python
         if: ${{ steps.changes.outputs.code == 'true' || steps.changes.outcome == 'skipped' }}
-        uses: "actions/setup-python@v2"
+        uses: "actions/setup-python@v5"
         with:
           python-version: "${{ matrix.config.python-version }}"
 
@@ -61,15 +61,15 @@ jobs:
           python -VV
           python -m site
           python -m pip install --upgrade pip setuptools wheel
-          python -m pip install --upgrade tox virtualenv!=20.16.0
+          python -m pip install --upgrade tox~=3.0 virtualenv!=20.16.0
           python -m pip install --upgrade coverage_pyver_pragma
 
       - name: "Run Tests for Python ${{ matrix.config.python-version }}"
         if: steps.setup-python.outcome == 'success'
         run: python -m tox -e "${{ matrix.config.testenvs }}" -s false
 
       - name: "Upload Coverage 🚀"
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v3
         if: ${{ always() && steps.setup-python.outcome == 'success' }}
         with:
           name: "coverage-${{ matrix.config.python-version }}"
@@ -81,10 +81,10 @@ jobs:
     runs-on: "ubuntu-20.04"
     steps:
       - name: Checkout 🛎️
-        uses: "actions/checkout@v2"
+        uses: "actions/checkout@v4"
 
       - name: Setup Python 🐍
-        uses: "actions/setup-python@v2"
+        uses: "actions/setup-python@v5"
         with:
           python-version: 3.8
 
@@ -94,7 +94,7 @@ jobs:
           python -m pip install --upgrade "coveralls>=3.0.0" coverage_pyver_pragma
 
       - name: "Download Coverage 🪂"
-        uses: actions/download-artifact@v2
+        uses: actions/download-artifact@v3
         with:
           path: coverage
 
@@ -112,7 +112,7 @@ jobs:
 
       - name: "Upload Combined Coverage Artefact 🚀"
         if: ${{ steps.show.outcome != 'failure' }}
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v3
         with:
           name: "combined-coverage"
           path: .coverage
@@ -130,11 +130,11 @@ jobs:
     runs-on: "ubuntu-20.04"
     steps:
       - name: Checkout 🛎️
-        uses: "actions/checkout@v2"
+        uses: "actions/checkout@v4"
         if: startsWith(github.ref, 'refs/tags/')
 
       - name: Setup Python 🐍
-        uses: "actions/setup-python@v2"
+        uses: "actions/setup-python@v5"
         if: startsWith(github.ref, 'refs/tags/')
         with:
           python-version: 3.8
@@ -143,7 +143,7 @@ jobs:
         if: startsWith(github.ref, 'refs/tags/')
         run: |
           python -m pip install --upgrade pip setuptools wheel
-          python -m pip install --upgrade tox
+          python -m pip install --upgrade tox~=3.0
 
       - name: Build distributions 📦
         if: startsWith(github.ref, 'refs/tags/')

diff --git a/.github/workflows/python_ci_macos.yml b/.github/workflows/python_ci_macos.yml
@@ -35,7 +35,7 @@ jobs:
 
     steps:
       - name: Checkout 🛎️
-        uses: "actions/checkout@v2"
+        uses: "actions/checkout@v4"
 
       - name: Check for changed files
         if: startsWith(github.ref, 'refs/tags/') != true
@@ -50,7 +50,7 @@ jobs:
       - name: Setup Python 🐍
         id: setup-python
         if: ${{ steps.changes.outputs.code == 'true' || steps.changes.outcome == 'skipped' }}
-        uses: "actions/setup-python@v2"
+        uses: "actions/setup-python@v5"
         with:
           python-version: "${{ matrix.config.python-version }}"
 
@@ -60,14 +60,14 @@ jobs:
           python -VV
           python -m site
           python -m pip install --upgrade pip setuptools wheel
-          python -m pip install --upgrade tox virtualenv!=20.16.0
+          python -m pip install --upgrade tox~=3.0 virtualenv!=20.16.0
 
       - name: "Run Tests for Python ${{ matrix.config.python-version }}"
         if: steps.setup-python.outcome == 'success'
         run: python -m tox -e "${{ matrix.config.testenvs }}" -s false
 
       - name: "Upload Coverage 🚀"
-        uses: actions/upload-artifact@v2
+        uses: actions/upload-artifact@v3
         if: ${{ always() && steps.setup-python.outcome == 'success' }}
         with:
           name: "coverage-${{ matrix.config.python-version }}"

diff --git a/.pre-commit-config.yaml b/.pre-commit-config.yaml
@@ -3,9 +3,12 @@
 
 exclude: ^$
 
+ci:
+  autoupdate_schedule: quarterly
+
 repos:
  - repo: https://github.com/repo-helper/pyproject-parser
-   rev: v0.7.0
+   rev: v0.9.1
    hooks:
     - id: reformat-pyproject
 
@@ -40,18 +43,18 @@ repos:
     - id: bind-requirements
 
  - repo: https://github.com/domdfcoding/flake8-dunder-all
-   rev: v0.2.2
+   rev: v0.3.1
    hooks:
     - id: ensure-dunder-all
       files: ^notebook2script/.*\.py$
 
  - repo: https://github.com/domdfcoding/flake2lint
-   rev: v0.4.2
+   rev: v0.4.3
    hooks:
     - id: flake2lint
 
  - repo: https://github.com/pre-commit/pygrep-hooks
-   rev: v1.9.0
+   rev: v1.10.0
    hooks:
     - id: python-no-eval
     - id: rst-backticks
@@ -67,24 +70,24 @@ repos:
        - --keep-runtime-typing
 
  - repo: https://github.com/Lucas-C/pre-commit-hooks
-   rev: v1.2.0
+   rev: v1.5.1
    hooks:
     - id: remove-crlf
     - id: forbid-crlf
 
  - repo: https://github.com/python-formate/snippet-fmt
-   rev: v0.1.4
+   rev: v0.1.5
    hooks:
     - id: snippet-fmt
 
  - repo: https://github.com/python-formate/formate
-   rev: v0.4.10
+   rev: v0.7.0
    hooks:
     - id: formate
       exclude: ^(doc-source/conf|__pkginfo__|setup)\.(_)?py$
 
  - repo: https://github.com/domdfcoding/dep_checker
-   rev: v0.7.0
+   rev: v0.8.0
    hooks:
     - id: dep_checker
       args:

diff --git a/.readthedocs.yml b/.readthedocs.yml
@@ -9,9 +9,16 @@ formats:
  - pdf
  - htmlzip
 python:
-  version: 3.8
   install:
    - requirements: requirements.txt
    - requirements: doc-source/requirements.txt
-   - method: pip
-     path: .
+build:
+  os: ubuntu-20.04
+  tools:
+    python: '3.9'
+  jobs:
+    post_create_environment:
+     - pip install .
+    post_install:
+     - pip install sphinxcontrib-applehelp==1.0.4 sphinxcontrib-devhelp==1.0.2 sphinxcontrib-htmlhelp==2.0.1
+       sphinxcontrib-jsmath==1.0.1 sphinxcontrib-qthelp==1.0.3 sphinxcontrib-serializinghtml==1.1.5
diff --git a/README.rst b/README.rst
@@ -55,8 +55,8 @@ notebook2script
 	:target: https://github.com/PyMassSpec/notebook2script/actions?query=workflow%3A%22mypy%22
 	:alt: mypy status
 
-.. |requires| image:: https://dependency-dash.herokuapp.com/github/PyMassSpec/notebook2script/badge.svg
-	:target: https://dependency-dash.herokuapp.com/github/PyMassSpec/notebook2script/
+.. |requires| image:: https://dependency-dash.repo-helper.uk/github/PyMassSpec/notebook2script/badge.svg
+	:target: https://dependency-dash.repo-helper.uk/github/PyMassSpec/notebook2script/
 	:alt: Requirements Status
 
 .. |coveralls| image:: https://img.shields.io/coveralls/github/PyMassSpec/notebook2script/master?logo=coveralls
@@ -98,7 +98,7 @@ notebook2script
 	:target: https://github.com/PyMassSpec/notebook2script/commit/master
 	:alt: GitHub last commit
 
-.. |maintained| image:: https://img.shields.io/maintenance/yes/2022
+.. |maintained| image:: https://img.shields.io/maintenance/yes/2024
 	:alt: Maintenance
 
 .. |pypi-downloads| image:: https://img.shields.io/pypi/dm/notebook2script

diff --git a/doc-source/index.rst b/doc-source/index.rst
@@ -58,8 +58,8 @@ notebook2script
 		:workflow: mypy
 		:alt: mypy status
 
-	.. |requires| image:: https://dependency-dash.herokuapp.com/github/PyMassSpec/notebook2script/badge.svg
-		:target: https://dependency-dash.herokuapp.com/github/PyMassSpec/notebook2script/
+	.. |requires| image:: https://dependency-dash.repo-helper.uk/github/PyMassSpec/notebook2script/badge.svg
+		:target: https://dependency-dash.repo-helper.uk/github/PyMassSpec/notebook2script/
 		:alt: Requirements Status
 
 	.. |coveralls| coveralls-shield::
@@ -104,7 +104,7 @@ notebook2script
 		:last-commit:
 		:alt: GitHub last commit
 
-	.. |maintained| maintained-shield:: 2022
+	.. |maintained| maintained-shield:: 2024
 		:alt: Maintenance
 
 	.. |pypi-downloads| pypi-shield::

diff --git a/doc-source/requirements.txt b/doc-source/requirements.txt
@@ -1,18 +1,18 @@
 git+https://github.com/domdfcoding/sphinx-click.git
-default-values>=0.5.0
-extras-require>=0.2.0
-furo>=2020.11.19b18
-html-section>=0.1.0
-seed-intersphinx-mapping>=0.3.1
+default-values>=0.6.0
+extras-require>=0.5.0
+furo==2021.06.18b36
+html-section>=0.3.0
+seed-intersphinx-mapping>=1.2.2
 sphinx>=3.0.3
-sphinx-copybutton>=0.2.12
-sphinx-debuginfo>=0.1.0
-sphinx-licenseinfo>=0.1.1
-sphinx-notfound-page>=0.5
+sphinx-copybutton>=0.5.2
+sphinx-debuginfo>=0.2.2
+sphinx-licenseinfo>=0.3.1
+sphinx-notfound-page>=0.8.3
 sphinx-prompt>=1.1.0
 sphinx-pyproject>=0.1.0
 sphinx-tabs>=1.1.13
-sphinx-toolbox>=2.13.0
+sphinx-toolbox>=3.5.0
 sphinxcontrib-httpdomain>=1.7.0
-sphinxemoji>=0.1.6
-toctree-plus>=0.5.0
+sphinxemoji>=0.2.0
+toctree-plus>=0.6.1