diff --git a/src/main/resources/plugins.config b/src/main/resources/plugins.config index 9a9c1256c..0092286c4 100644 --- a/src/main/resources/plugins.config +++ b/src/main/resources/plugins.config @@ -23,35 +23,32 @@ # # Plugins from the spimreconstructions # -Plugins>Multiview Reconstruction, "MultiView Reconstruction Application", net.preibisch.mvrecon.fiji.plugin.Data_Explorer -Plugins>Multiview Reconstruction>Batch Processing, "Define Multi-View Dataset", net.preibisch.mvrecon.fiji.plugin.Define_Multi_View_Dataset -Plugins>Multiview Reconstruction>Batch Processing, "Detect Interest Points for Registration", net.preibisch.mvrecon.fiji.plugin.Interest_Point_Detection -Plugins>Multiview Reconstruction>Batch Processing, "Register Dataset based on Interest Points", net.preibisch.mvrecon.fiji.plugin.Interest_Point_Registration -Plugins>Multiview Reconstruction>Batch Processing, "Fuse", net.preibisch.mvrecon.fiji.plugin.Image_Fusion -Plugins>Multiview Reconstruction>Batch Processing, "Quality Estimation", net.preibisch.mvrecon.fiji.plugin.Image_Quality -Plugins>Multiview Reconstruction>Batch Processing, "Deconvolve", net.preibisch.mvrecon.fiji.plugin.Image_Deconvolution -Plugins>Multiview Reconstruction>Batch Processing, "Extract PSFs", net.preibisch.mvrecon.fiji.plugin.PSF_Extract -Plugins>Multiview Reconstruction>Batch Processing>Tools, "Apply Transformations", net.preibisch.mvrecon.fiji.plugin.Apply_Transformation -Plugins>Multiview Reconstruction>Batch Processing>Tools, "Define Bounding Box", net.preibisch.mvrecon.fiji.plugin.Define_Bounding_Box -Plugins>Multiview Reconstruction>Batch Processing>Tools, "Duplicate Transformations", net.preibisch.mvrecon.fiji.plugin.Duplicate_Transformation -Plugins>Multiview Reconstruction>Batch Processing>Tools, "Display View", net.preibisch.mvrecon.fiji.plugin.Display_View -Plugins>Multiview Reconstruction>Batch Processing>Tools, "Specify Calibration", net.preibisch.mvrecon.fiji.plugin.Specify_Calibration -Plugins>Multiview Reconstruction>Batch Processing>Tools, "Visualize Detections", net.preibisch.mvrecon.fiji.plugin.Visualize_Detections -Plugins>Multiview Reconstruction>Batch Processing>Tools, "Create Detections from Correspondences", net.preibisch.mvrecon.fiji.plugin.CreateFromCorresponding_Detections -Plugins>Multiview Reconstruction>Batch Processing>Tools, "Show Detection Distance Histogram", net.preibisch.mvrecon.fiji.plugin.Show_Histogram -Plugins>Multiview Reconstruction>Batch Processing>Tools, "Show Relative Detection Distance Histogram", net.preibisch.mvrecon.fiji.plugin.Show_Relative_Histogram -Plugins>Multiview Reconstruction>Batch Processing>Tools, "Remove Detections by Distance", net.preibisch.mvrecon.fiji.plugin.ThinOut_Detections -Plugins>Multiview Reconstruction>Batch Processing>Tools, "Remove Detections by relative Distance", net.preibisch.mvrecon.fiji.plugin.RelativeThinOut_Detections -Plugins>Multiview Reconstruction>Batch Processing>Tools, "Visualize smFISH detections (hack)", net.preibisch.mvrecon.headless.interestpointdetection.VisualizeSmFISH -Plugins>Multiview Reconstruction>Batch Processing>Tools>PSF, "View PSFs", net.preibisch.mvrecon.fiji.plugin.PSF_View -Plugins>Multiview Reconstruction>Batch Processing>Tools>PSF, "Average PSFs", net.preibisch.mvrecon.fiji.plugin.PSF_Average -Plugins>Multiview Reconstruction>Batch Processing>Tools>PSF, "Assign PSFs", net.preibisch.mvrecon.fiji.plugin.PSF_Assign -Plugins>Multiview Reconstruction>Batch Processing>Tools>Intensity, "Adjust Intensities", net.preibisch.mvrecon.fiji.plugin.Intensity_Adjustment -Plugins>Multiview Reconstruction>Batch Processing>Tools>Intensity, "Remove Intensitiy Adjustments", net.preibisch.mvrecon.fiji.plugin.RemoveIntensity_Adjustment -Plugins>Multiview Reconstruction>Batch Processing>Resave, "As HDF5", net.preibisch.mvrecon.fiji.plugin.resave.Resave_HDF5 -Plugins>Multiview Reconstruction>Batch Processing>Resave, "As N5", net.preibisch.mvrecon.fiji.plugin.resave.Resave_N5 -Plugins>Multiview Reconstruction>Batch Processing>Resave, "As TIFF", net.preibisch.mvrecon.fiji.plugin.resave.Resave_TIFF -Plugins>Multiview Reconstruction>Batch Processing>Tools>Cluster, "Toggle Cluster Processing", net.preibisch.mvrecon.fiji.plugin.Toggle_Cluster_Options -Plugins>Multiview Reconstruction>Batch Processing>Tools>Cluster, "Merge Cluster Jobs", net.preibisch.mvrecon.fiji.plugin.Merge_Cluster_Jobs -Plugins>BigStitcher>Tools, "Resave Luxendo XML for BigStitcher", net.preibisch.mvrecon.headless.definedataset.Rewrite_LuxendoXML +Plugins>BigStitcher>General, "Define Multi-View Dataset", net.preibisch.mvrecon.fiji.plugin.Define_Multi_View_Dataset +Plugins>BigStitcher>General, "Image Fusion", net.preibisch.mvrecon.fiji.plugin.Image_Fusion +Plugins>BigStitcher>General, "Quality Estimation", net.preibisch.mvrecon.fiji.plugin.Image_Quality +Plugins>BigStitcher>General, "Deconvolution", net.preibisch.mvrecon.fiji.plugin.Image_Deconvolution +Plugins>BigStitcher>General>Tools, "Apply Transformations", net.preibisch.mvrecon.fiji.plugin.Apply_Transformation +Plugins>BigStitcher>General>Tools, "Define Bounding Box", net.preibisch.mvrecon.fiji.plugin.Define_Bounding_Box +Plugins>BigStitcher>General>Tools, "Duplicate Transformations", net.preibisch.mvrecon.fiji.plugin.Duplicate_Transformation +Plugins>BigStitcher>General>Tools, "Display View", net.preibisch.mvrecon.fiji.plugin.Display_View +Plugins>BigStitcher>General>Tools, "Specify Calibration", net.preibisch.mvrecon.fiji.plugin.Specify_Calibration +Plugins>BigStitcher>General>Tools>PSF, "View PSFs", net.preibisch.mvrecon.fiji.plugin.PSF_View +Plugins>BigStitcher>General>Tools>PSF, "Average PSFs", net.preibisch.mvrecon.fiji.plugin.PSF_Average +Plugins>BigStitcher>General>Tools>PSF, "Assign PSFs", net.preibisch.mvrecon.fiji.plugin.PSF_Assign +Plugins>BigStitcher>General>Tools>Intensity, "Adjust Intensities", net.preibisch.mvrecon.fiji.plugin.Intensity_Adjustment +Plugins>BigStitcher>General>Tools>Intensity, "Remove Intensitiy Adjustments", net.preibisch.mvrecon.fiji.plugin.RemoveIntensity_Adjustment +Plugins>BigStitcher>Interest Points, "Detect Interest Points for Registration", net.preibisch.mvrecon.fiji.plugin.Interest_Point_Detection +Plugins>BigStitcher>Interest Points, "Register Dataset based on Interest Points", net.preibisch.mvrecon.fiji.plugin.Interest_Point_Registration +Plugins>BigStitcher>Interest Points, "Extract PSFs", net.preibisch.mvrecon.fiji.plugin.PSF_Extract +Plugins>BigStitcher>Interest Points>Tools, "Visualize Detections", net.preibisch.mvrecon.fiji.plugin.Visualize_Detections +Plugins>BigStitcher>Interest Points>Tools, "Create Detections from Correspondences", net.preibisch.mvrecon.fiji.plugin.CreateFromCorresponding_Detections +Plugins>BigStitcher>Interest Points>Tools, "Show Detection Distance Histogram", net.preibisch.mvrecon.fiji.plugin.Show_Histogram +Plugins>BigStitcher>Interest Points>Tools, "Show Relative Detection Distance Histogram", net.preibisch.mvrecon.fiji.plugin.Show_Relative_Histogram +Plugins>BigStitcher>Interest Points>Tools, "Remove Detections by Distance", net.preibisch.mvrecon.fiji.plugin.ThinOut_Detections +Plugins>BigStitcher>Interest Points>Tools, "Remove Detections by relative Distance", net.preibisch.mvrecon.fiji.plugin.RelativeThinOut_Detections +Plugins>BigStitcher>I/O, "Resave as HDF5 (local)", net.preibisch.mvrecon.fiji.plugin.resave.Resave_HDF5 +Plugins>BigStitcher>I/O, "Resave as N5 (local, cloud)", net.preibisch.mvrecon.fiji.plugin.resave.Resave_N5 +Plugins>BigStitcher>I/O, "Resave As TIFF (local)", net.preibisch.mvrecon.fiji.plugin.resave.Resave_TIFF +Plugins>BigStitcher>I/O, "Save as ...", net.preibisch.mvrecon.fiji.plugin.XMLSaveAs +Plugins>BigStitcher>I/O, "Resave Luxendo XML for BigStitcher", net.preibisch.mvrecon.headless.definedataset.Rewrite_LuxendoXML