From 125fd6ed36f534aa6072c35496028484c51fa0e0 Mon Sep 17 00:00:00 2001
From: Amandine <amandine.sahl@cevennes-parcnational.fr>
Date: Tue, 10 Oct 2023 09:40:07 +0200
Subject: [PATCH] Add pytests githubaction (#254)

* Add tests workflow

* Add fake test
---
 .github/workflows/pytest.yml                  | 120 ++++++++++++++++++
 .gitmodules                                   |   4 +
 .../gn_module_monitoring/tests/test_true.py   |   6 +
 dependencies/GeoNature                        |   1 +
 4 files changed, 131 insertions(+)
 create mode 100644 .github/workflows/pytest.yml
 create mode 100644 .gitmodules
 create mode 100644 backend/gn_module_monitoring/tests/test_true.py
 create mode 160000 dependencies/GeoNature

diff --git a/.github/workflows/pytest.yml b/.github/workflows/pytest.yml
new file mode 100644
index 000000000..fb0c6beca
--- /dev/null
+++ b/.github/workflows/pytest.yml
@@ -0,0 +1,120 @@
+name: pytest
+
+on:
+  push:
+    branches:
+      - master
+      - hotfixes
+      - develop
+      - workshop
+  pull_request:
+    branches:
+      - master
+      - hotfixes
+      - develop
+      - workshop
+
+jobs:
+  build:
+
+    runs-on: ubuntu-latest
+
+    strategy:
+      fail-fast: false
+      matrix:
+        include:
+          - name: "Debian 10"
+            python-version: "3.7"
+            postgres-version: 11
+            postgis-version: 2.5
+          - name: "Debian 11"
+            python-version: "3.9"
+            postgres-version: 13
+            postgis-version: 3.2
+
+    name: ${{ matrix.name }}
+
+    services:
+      postgres:
+        image: postgis/postgis:${{ matrix.postgres-version }}-${{ matrix.postgis-version }}
+        env:
+          POSTGRES_DB: geonature2db
+          POSTGRES_PASSWORD: geonatpasswd
+          POSTGRES_USER: geonatadmin
+        ports:
+          - 5432:5432
+        options: >-
+          --health-cmd pg_isready
+          --health-interval 10s
+          --health-timeout 5s
+          --health-retries 5
+      redis:
+        image: redis
+        ports:
+          - 6379:6379
+        options: >-
+          --health-cmd "redis-cli ping"
+          --health-interval 10s
+          --health-timeout 5s
+          --health-retries 5
+
+    steps:
+    - name: Add postgis_raster database extension
+      if: ${{ matrix.postgis-version >= 3 }}
+      run: |
+        psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "postgis_raster";'
+      env:
+        PGPASSWORD: geonatpasswd
+    - name: Add database extensions
+      run: |
+        psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "hstore";'
+        psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "uuid-ossp";'
+        psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "pg_trgm";'
+        psql -h localhost -U geonatadmin -d geonature2db -tc 'CREATE EXTENSION "unaccent";'
+      env:
+        PGPASSWORD: geonatpasswd
+    - uses: actions/checkout@v2
+      with:
+        submodules: recursive
+    - name: Set up Python ${{ matrix.python-version }}
+      uses: actions/setup-python@v2
+      with:
+        python-version: ${{ matrix.python-version }}
+    - name: Install GDAL
+      run: |
+        sudo apt update
+        sudo apt install -y libgdal-dev
+    - name: Install dependencies
+      run: |
+        python -m pip install --upgrade pip
+        python -m pip install \
+          -e ..[tests] \
+          -r requirements-dev.txt
+      working-directory: ./dependencies/GeoNature/backend
+    - name: Install database
+      run: |
+        geonature db upgrade geonature@head -x local-srid=2154
+        geonature db autoupgrade -x local-srid=2154
+        geonature taxref import-v15 --skip-bdc-statuts
+        geonature db upgrade geonature-samples@head
+        geonature db upgrade nomenclatures_taxonomie_data@head
+        geonature db upgrade ref_geo_fr_departments@head
+        geonature db upgrade ref_geo_fr_municipalities@head
+        geonature db upgrade ref_geo_inpn_grids_10@head
+      env:
+        GEONATURE_CONFIG_FILE: dependencies/GeoNature/config/test_config.toml
+    - name: Install import module database
+      run: |
+        geonature upgrade-modules-db MONITORINGS
+      env:
+        GEONATURE_CONFIG_FILE: dependencies/GeoNature/config/test_config.toml
+    - name: Test with pytest
+      run: |
+        pytest -v --cov --cov-report xml
+      env:
+        GEONATURE_CONFIG_FILE: dependencies/GeoNature/config/test_config.toml
+    - name: Upload coverage to Codecov
+      if: ${{ matrix.name == 'Debian 11' }}
+      uses: codecov/codecov-action@v2
+      with:
+        flags: pytest
diff --git a/.gitmodules b/.gitmodules
new file mode 100644
index 000000000..39957d44f
--- /dev/null
+++ b/.gitmodules
@@ -0,0 +1,4 @@
+[submodule "dependencies/GeoNature"]
+	path = dependencies/GeoNature
+	url = git@github.com:PnX-SI/GeoNature.git
+    branch = develop
diff --git a/backend/gn_module_monitoring/tests/test_true.py b/backend/gn_module_monitoring/tests/test_true.py
new file mode 100644
index 000000000..082867288
--- /dev/null
+++ b/backend/gn_module_monitoring/tests/test_true.py
@@ -0,0 +1,6 @@
+import pytest
+
+
+class Tests:
+    def test_true_is_true(self):
+        assert True == True
diff --git a/dependencies/GeoNature b/dependencies/GeoNature
new file mode 160000
index 000000000..7ee68c555
--- /dev/null
+++ b/dependencies/GeoNature
@@ -0,0 +1 @@
+Subproject commit 7ee68c5555ecd4e3d1b252dd78254a492cd2d7eb