gn-module-pytest.yml

name: Run pytest against GeoNature module

on:
  workflow_call:
    inputs:
      geonature_ref:
        description: "La branche, tag ou SHA de GeoNature à utiliser"
        default: "master"
        required: false
        type: string
      upload_coverage:
        description: "Téléverser la couverture de code sur Codecov"
        default: false
        required: false
        type: boolean
    secrets:
      codecov_token:
        description: "Token pour téléverser sur codecov"
        required: false

jobs:
  build:
    runs-on: ubuntu-latest

    strategy:
      fail-fast: false
      matrix:
        debian-version: ['11', '12']
        include:
          - debian-version: '11'
            python-version: '3.9'
            postgres-version: '13'
            postgis-version: '3.2'
          - debian-version: '12'
            python-version: '3.11'
            postgres-version: '15'
            postgis-version: '3.3'

    name: Debian ${{ matrix.debian-version }}

    services:
      postgres:
        image: postgis/postgis:${{ matrix.postgres-version }}-${{ matrix.postgis-version }}
        env:
          POSTGRES_DB: geonature2db
          POSTGRES_PASSWORD: geonatpasswd
          POSTGRES_USER: geonatadmin
        ports:
          - 5432:5432
        options: >-
          --health-cmd pg_isready
          --health-interval 10s
          --health-timeout 5s
          --health-retries 5

    env:
      MODULE_DIR: ${{ github.workspace }}/extra/${{ github.event.repository.name }}

    steps:
      - name: Clone GeoNature
        uses: actions/checkout@v4
        with:
          repository: pnx-si/geonature
          ref: ${{ inputs.geonature_ref }}
          submodules: true
      - name: Clone ${{ github.event.repository.name }} module
        uses: actions/checkout@v4
        with:
          path: ${{ env.MODULE_DIR }}
      - name: Add database extensions
        run: |
          psql -h localhost -U geonatadmin -d geonature2db -f install/assets/db/add_pg_extensions.sql
        env:
          PGPASSWORD: geonatpasswd
      - name: Set up Python ${{ matrix.python-version }}
        uses: actions/setup-python@v5
        with:
          python-version: ${{ matrix.python-version }}
          cache: 'pip'
      - name: Install GDAL
        run: |
          sudo apt update
          sudo apt install -y libgdal-dev
      - name: Install dependencies
        if: github.action_ref == 'master'
        run: |
          echo 'Installation des requirements de prod'
          python -m pip install --upgrade pip
          python -m pip install \
            -e ..[tests] \
            -r requirements.txt
        working-directory: ./backend
      - name: Install dependencies
        if: github.action_ref != 'master'
        run: |
          echo 'Installation des requirements de dev'
          python -m pip install --upgrade pip
          python -m pip install \
            -e ..[tests] \
            -r requirements-dev.txt
        working-directory: ./backend
      - name: Show database branches and dependencies
        run: |
          geonature db status --dependencies
        env:
          GEONATURE_CONFIG_FILE: config/test_config.toml
      - name: Install database
        run: |
          install/03b_populate_db.sh
        env:
          GEONATURE_CONFIG_FILE: config/test_config.toml
          srid_local: 2154
          install_bdc_statuts: true
          taxref_region: fr
          add_sample_data: true
          install_sig_layers: true
          install_grid_layer_5: true
          install_grid_layer_10: true
          install_ref_sensitivity: true
      - name: Show database status
        run: |
          geonature db status
        env:
          GEONATURE_CONFIG_FILE: config/test_config.toml
      - name: Install core modules backend
        run: |
          pip install -e contrib/occtax
          pip install -e contrib/gn_module_occhab
          pip install -e contrib/gn_module_validation
      - name: Install ${{ github.event.repository.name }} module backend
        run: |
          pip install -e .
        working-directory: ${{ env.MODULE_DIR }}
      - name: Install modules database
        run: |
          geonature upgrade-modules-db
        env:
          GEONATURE_CONFIG_FILE: config/test_config.toml
      - name: Show database status
        run: |
          geonature db status --dependencies
        env:
          GEONATURE_CONFIG_FILE: config/test_config.toml
      - name: Test with pytest
        run: |
          pytest -v --cov --cov-report xml
        working-directory: ${{ env.MODULE_DIR }}
        env:
          GEONATURE_CONFIG_FILE: ${{ github.workspace }}/config/test_config.toml
      - name: Show coverage
        run: |
          coverage report
        working-directory: ${{ env.MODULE_DIR }}
      - name: Upload coverage to Codecov
        if: ${{ inputs.upload_coverage && matrix.debian-version == '12' }}
        uses: codecov/codecov-action@v4
        with:
          token: ${{ secrets.codecov_token }}
          flags: pytest