forked from jules32/rmarkdown-website-tutorial
-
Notifications
You must be signed in to change notification settings - Fork 0
/
index.html
259 lines (209 loc) · 7.02 KB
/
index.html
1
2
3
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
61
62
63
64
65
66
67
68
69
70
71
72
73
74
75
76
77
78
79
80
81
82
83
84
85
86
87
88
89
90
91
92
93
94
95
96
97
98
99
100
101
102
103
104
105
106
107
108
109
110
111
112
113
114
115
116
117
118
119
120
121
122
123
124
125
126
127
128
129
130
131
132
133
134
135
136
137
138
139
140
141
142
143
144
145
146
147
148
149
150
151
152
153
154
155
156
157
158
159
160
161
162
163
164
165
166
167
168
169
170
171
172
173
174
175
176
177
178
179
180
181
182
183
184
185
186
187
188
189
190
191
192
193
194
195
196
197
198
199
200
201
202
203
204
205
206
207
208
209
210
211
212
213
214
215
216
217
218
219
220
221
222
223
224
225
226
227
228
229
230
231
232
233
234
235
236
237
238
239
240
241
242
243
244
245
246
247
248
249
250
251
252
253
254
255
256
257
258
259
<!DOCTYPE html>
<html xmlns="http://www.w3.org/1999/xhtml">
<head>
<meta charset="utf-8" />
<meta http-equiv="Content-Type" content="text/html; charset=utf-8" />
<meta name="generator" content="pandoc" />
<meta name="author" content="Julie Lowndes at NCEAS, 12/14/16" />
<title>Making free websites with RStudio’s R Markdown</title>
<script src="site_libs/jquery-1.11.3/jquery.min.js"></script>
<meta name="viewport" content="width=device-width, initial-scale=1" />
<link href="site_libs/bootstrap-3.3.5/css/yeti.min.css" rel="stylesheet" />
<script src="site_libs/bootstrap-3.3.5/js/bootstrap.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/html5shiv.min.js"></script>
<script src="site_libs/bootstrap-3.3.5/shim/respond.min.js"></script>
<script src="site_libs/navigation-1.1/tabsets.js"></script>
<link href="site_libs/highlightjs-9.12.0/textmate.css" rel="stylesheet" />
<script src="site_libs/highlightjs-9.12.0/highlight.js"></script>
<style type="text/css">code{white-space: pre;}</style>
<style type="text/css">
pre:not([class]) {
background-color: white;
}
</style>
<script type="text/javascript">
if (window.hljs) {
hljs.configure({languages: []});
hljs.initHighlightingOnLoad();
if (document.readyState && document.readyState === "complete") {
window.setTimeout(function() { hljs.initHighlighting(); }, 0);
}
}
</script>
<style type="text/css">
h1 {
font-size: 34px;
}
h1.title {
font-size: 38px;
}
h2 {
font-size: 30px;
}
h3 {
font-size: 24px;
}
h4 {
font-size: 18px;
}
h5 {
font-size: 16px;
}
h6 {
font-size: 12px;
}
.table th:not([align]) {
text-align: left;
}
</style>
</head>
<body>
<style type = "text/css">
.main-container {
max-width: 940px;
margin-left: auto;
margin-right: auto;
}
code {
color: inherit;
background-color: rgba(0, 0, 0, 0.04);
}
img {
max-width:100%;
height: auto;
}
.tabbed-pane {
padding-top: 12px;
}
button.code-folding-btn:focus {
outline: none;
}
</style>
<style type="text/css">
/* padding for bootstrap navbar */
body {
padding-top: 45px;
padding-bottom: 40px;
}
/* offset scroll position for anchor links (for fixed navbar) */
.section h1 {
padding-top: 50px;
margin-top: -50px;
}
.section h2 {
padding-top: 50px;
margin-top: -50px;
}
.section h3 {
padding-top: 50px;
margin-top: -50px;
}
.section h4 {
padding-top: 50px;
margin-top: -50px;
}
.section h5 {
padding-top: 50px;
margin-top: -50px;
}
.section h6 {
padding-top: 50px;
margin-top: -50px;
}
</style>
<script>
// manage active state of menu based on current page
$(document).ready(function () {
// active menu anchor
href = window.location.pathname
href = href.substr(href.lastIndexOf('/') + 1)
if (href === "")
href = "index.html";
var menuAnchor = $('a[href="' + href + '"]');
// mark it active
menuAnchor.parent().addClass('active');
// if it's got a parent navbar menu mark it active as well
menuAnchor.closest('li.dropdown').addClass('active');
});
</script>
<div class="container-fluid main-container">
<!-- tabsets -->
<script>
$(document).ready(function () {
window.buildTabsets("TOC");
});
</script>
<!-- code folding -->
<div class="navbar navbar-default navbar-fixed-top" role="navigation">
<div class="container">
<div class="navbar-header">
<button type="button" class="navbar-toggle collapsed" data-toggle="collapse" data-target="#navbar">
<span class="icon-bar"></span>
<span class="icon-bar"></span>
<span class="icon-bar"></span>
</button>
<a class="navbar-brand" href="index.html">HOME</a>
</div>
<div id="navbar" class="navbar-collapse collapse">
<ul class="nav navbar-nav">
<li>
<a href="first_observations.html">First Observations</a>
</li>
<li>
<a href="basic_workflow.html">Basic Workflow</a>
</li>
<li>
<a href="getting_sophisticated.html">Getting Sophisticated</a>
</li>
<li>
<a href="your_turn.html">Your Turn</a>
</li>
</ul>
<ul class="nav navbar-nav navbar-right">
</ul>
</div><!--/.nav-collapse -->
</div><!--/.container -->
</div><!--/.navbar -->
<div class="fluid-row" id="header">
<h1 class="title toc-ignore">Making free websites with RStudio’s R Markdown</h1>
<h4 class="author"><em><a href="https://github.com/jules32">Julie Lowndes</a> at <a href="https://www.nceas.ucsb.edu/">NCEAS</a>, 12/14/16</em></h4>
</div>
<hr />
<p>It’s possible to create well-designed websites for free using <a href="http://rmarkdown.rstudio.com/">RStudio’s R Markdown</a> and hosting them on <a href="http://github.com">Github</a>. This is very new and incredibly cool. It is a really powerful way to communicate science using the same reproducible workflow you use for your analyses and collaborations.</p>
<p><strong><em>Creating websites with R Markdown can be done without knowing R or HTML, CSS, etc,</em></strong> and that’s where we’ll start. However, R Markdown integrates with these tools so the more you know the more complex and beautiful your website can be. This tutorial borrows heavily from a lot of great tutorials and resources you should check out too – there are links throughout.</p>
<p>The best way to learn is to follow along with your own laptop, but all are welcome. We’ll spend half the time with the tutorial and half the time for you to work on your own website and get help. If you bring your laptop please do this beforehand:</p>
<ol style="list-style-type: decimal">
<li>install <a href="https://www.rstudio.com/products/rstudio/download/">RStudio</a></li>
<li>create a <a href="(http://github.com)">GitHub</a> account (<a href="http://happygitwithr.com/github-acct.html">advice</a>)</li>
<li>set up your computer to talk to GitHub
<ul>
<li>have RStudio linked directly (preferred) (<a href="http://happygitwithr.com/hello-git.html">instructions sections 8-14</a>)</li>
<li>or install the <a href="https://desktop.github.com/">Desktop App</a></li>
<li>or be familiar with git commands for the command line (<a href="https://try.github.io/levels/1/challenges/1">tutorial</a>)</li>
</ul></li>
</ol>
<hr />
<p><strong>Examples:</strong></p>
<p>We have been using R Markdown for the Ocean Health Index: <a href="http://ohi-science.org/ohi-global"><strong>ohi-science.org/ohi-global</strong></a>.<br />
And R Markdown is much more than just websites – here’s a <a href="http://rmarkdown.rstudio.com/lesson-1.html"><strong>one-minute video about R Markdown</strong></a> to get you excited.</p>
</div>
<script>
// add bootstrap table styles to pandoc tables
function bootstrapStylePandocTables() {
$('tr.header').parent('thead').parent('table').addClass('table table-condensed');
}
$(document).ready(function () {
bootstrapStylePandocTables();
});
</script>
<!-- dynamically load mathjax for compatibility with self-contained -->
<script>
(function () {
var script = document.createElement("script");
script.type = "text/javascript";
script.src = "https://mathjax.rstudio.com/latest/MathJax.js?config=TeX-AMS-MML_HTMLorMML";
document.getElementsByTagName("head")[0].appendChild(script);
})();
</script>
</body>
</html>