diff --git a/xcp_d/tests/data/test_ds001419_cifti_outputs.txt b/xcp_d/tests/data/test_ds001419_cifti_outputs.txt index 95dd5618f..f484fc59f 100644 --- a/xcp_d/tests/data/test_ds001419_cifti_outputs.txt +++ b/xcp_d/tests/data/test_ds001419_cifti_outputs.txt @@ -22,10 +22,10 @@ xcp_d/atlas-Glasser_dseg.json xcp_d/atlas-Glasser_dseg.tsv xcp_d/atlas-Gordon_dseg.json xcp_d/atlas-Gordon_dseg.tsv -xcp_d/atlas-Tian_dseg.json -xcp_d/atlas-Tian_dseg.tsv xcp_d/atlas-HCP_dseg.json xcp_d/atlas-HCP_dseg.tsv +xcp_d/atlas-Tian_dseg.json +xcp_d/atlas-Tian_dseg.tsv xcp_d/dataset_description.json xcp_d/desc-linc_qc.json xcp_d/logs @@ -42,8 +42,8 @@ xcp_d/space-fsLR_atlas-4S852Parcels_den-91k_dseg.dlabel.nii xcp_d/space-fsLR_atlas-4S952Parcels_den-91k_dseg.dlabel.nii xcp_d/space-fsLR_atlas-Glasser_den-91k_dseg.dlabel.nii xcp_d/space-fsLR_atlas-Gordon_den-91k_dseg.dlabel.nii -xcp_d/space-fsLR_atlas-Tian_den-91k_dseg.dlabel.nii xcp_d/space-fsLR_atlas-HCP_den-91k_dseg.dlabel.nii +xcp_d/space-fsLR_atlas-Tian_den-91k_dseg.dlabel.nii xcp_d/sub-01 xcp_d/sub-01.html xcp_d/sub-01/anat @@ -51,13 +51,15 @@ xcp_d/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz xcp_d/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_dseg.nii.gz xcp_d/sub-01/func xcp_d/sub-01/func/sub-01_task-imagery_desc-dcan_qc.hdf5 +xcp_d/sub-01/func/sub-01_task-imagery_desc-filtered_motion.json xcp_d/sub-01/func/sub-01_task-imagery_desc-filtered_motion.tsv +xcp_d/sub-01/func/sub-01_task-imagery_outliers.json xcp_d/sub-01/func/sub-01_task-imagery_outliers.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_desc-dcan_qc.hdf5 xcp_d/sub-01/func/sub-01_task-imagery_run-01_desc-filtered_motion.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_desc-filtered_motion.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-01_design.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_design.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_design.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_outliers.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_outliers.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-4S1052Parcels_coverage.tsv @@ -144,13 +146,6 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Gordon_den-91k_tim xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Gordon_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Gordon_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Gordon_timeseries.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_coverage.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_den-91k_coverage.pscalar.nii -xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_den-91k_measure-pearsoncorrelation_conmat.pconn.nii -xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_den-91k_timeseries.ptseries.nii -xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_measure-pearsoncorrelation_conmat.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_reho.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_den-91k_coverage.pscalar.nii xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_den-91k_measure-pearsoncorrelation_conmat.pconn.nii @@ -158,6 +153,13 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_den-91k_timese xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-HCP_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_coverage.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_den-91k_coverage.pscalar.nii +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_den-91k_measure-pearsoncorrelation_conmat.pconn.nii +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_measure-pearsoncorrelation_conmat.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_reho.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_desc-denoisedSmoothed_bold.dtseries.nii xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_desc-denoisedSmoothed_bold.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_desc-denoised_bold.dtseries.nii @@ -170,8 +172,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-fsLR_den-91k_reho.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_desc-dcan_qc.hdf5 xcp_d/sub-01/func/sub-01_task-imagery_run-02_desc-filtered_motion.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_desc-filtered_motion.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-02_design.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_design.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_design.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_outliers.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_outliers.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-4S1052Parcels_coverage.tsv @@ -258,13 +260,6 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Gordon_den-91k_tim xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Gordon_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Gordon_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Gordon_timeseries.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_coverage.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_den-91k_coverage.pscalar.nii -xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_den-91k_measure-pearsoncorrelation_conmat.pconn.nii -xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_den-91k_timeseries.ptseries.nii -xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_measure-pearsoncorrelation_conmat.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_reho.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_den-91k_coverage.pscalar.nii xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_den-91k_measure-pearsoncorrelation_conmat.pconn.nii @@ -272,6 +267,13 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_den-91k_timese xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-HCP_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_coverage.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_den-91k_coverage.pscalar.nii +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_den-91k_measure-pearsoncorrelation_conmat.pconn.nii +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_measure-pearsoncorrelation_conmat.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_reho.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_desc-denoisedSmoothed_bold.dtseries.nii xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_desc-denoisedSmoothed_bold.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_desc-denoised_bold.dtseries.nii @@ -281,35 +283,65 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_desc-interpolate xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_desc-linc_qc.csv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_reho.dscalar.nii xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-fsLR_den-91k_reho.json +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S1052Parcels_den-91k_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S1052Parcels_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S1052Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S1052Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S152Parcels_den-91k_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S152Parcels_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S152Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S152Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S252Parcels_den-91k_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S252Parcels_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S252Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S252Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S352Parcels_den-91k_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S352Parcels_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S352Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S352Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S452Parcels_den-91k_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S452Parcels_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S452Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S452Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S552Parcels_den-91k_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S552Parcels_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S552Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S552Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S652Parcels_den-91k_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S652Parcels_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S652Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S652Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S752Parcels_den-91k_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S752Parcels_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S752Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S752Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S852Parcels_den-91k_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S852Parcels_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S852Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S852Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S952Parcels_den-91k_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S952Parcels_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S952Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-4S952Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-Glasser_den-91k_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-Glasser_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-Glasser_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-Glasser_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-Gordon_den-91k_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-Gordon_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-Gordon_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-Gordon_timeseries.tsv -xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-Tian_den-91k_timeseries.ptseries.nii -xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-Tian_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-HCP_den-91k_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-HCP_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-HCP_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-HCP_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-Tian_den-91k_timeseries.json +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-Tian_den-91k_timeseries.ptseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-Tian_timeseries.json +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_den-91k_desc-denoisedSmoothed_bold.dtseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_den-91k_desc-denoisedSmoothed_bold.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_den-91k_desc-denoised_bold.dtseries.nii +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_den-91k_desc-denoised_bold.json xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_den-91k_desc-interpolated_bold.dtseries.nii -xcp_d/sub-01_executive_summary.html +xcp_d/sub-01/func/sub-01_task-imagery_space-fsLR_den-91k_desc-interpolated_bold.jsonxcp_d/sub-01_executive_summary.html diff --git a/xcp_d/tests/data/test_ds001419_nifti_outputs.txt b/xcp_d/tests/data/test_ds001419_nifti_outputs.txt index 2f78e96bc..0b2503777 100644 --- a/xcp_d/tests/data/test_ds001419_nifti_outputs.txt +++ b/xcp_d/tests/data/test_ds001419_nifti_outputs.txt @@ -22,10 +22,10 @@ xcp_d/atlas-Glasser_dseg.json xcp_d/atlas-Glasser_dseg.tsv xcp_d/atlas-Gordon_dseg.json xcp_d/atlas-Gordon_dseg.tsv -xcp_d/atlas-Tian_dseg.json -xcp_d/atlas-Tian_dseg.tsv xcp_d/atlas-HCP_dseg.json xcp_d/atlas-HCP_dseg.tsv +xcp_d/atlas-Tian_dseg.json +xcp_d/atlas-Tian_dseg.tsv xcp_d/dataset_description.json xcp_d/desc-linc_qc.json xcp_d/logs @@ -42,20 +42,22 @@ xcp_d/space-MNI152NLin2009cAsym_atlas-4S852Parcels_res-2_dseg.nii.gz xcp_d/space-MNI152NLin2009cAsym_atlas-4S952Parcels_res-2_dseg.nii.gz xcp_d/space-MNI152NLin2009cAsym_atlas-Glasser_res-2_dseg.nii.gz xcp_d/space-MNI152NLin2009cAsym_atlas-Gordon_res-2_dseg.nii.gz -xcp_d/space-MNI152NLin2009cAsym_atlas-Tian_res-2_dseg.nii.gz xcp_d/space-MNI152NLin2009cAsym_atlas-HCP_res-2_dseg.nii.gz +xcp_d/space-MNI152NLin2009cAsym_atlas-Tian_res-2_dseg.nii.gz xcp_d/sub-01 xcp_d/sub-01.html xcp_d/sub-01/anat xcp_d/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz xcp_d/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_dseg.nii.gz xcp_d/sub-01/func +xcp_d/sub-01/func/sub-01_task-imagery_desc-filtered_motion.json xcp_d/sub-01/func/sub-01_task-imagery_desc-filtered_motion.tsv +xcp_d/sub-01/func/sub-01_task-imagery_outliers.json xcp_d/sub-01/func/sub-01_task-imagery_outliers.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_desc-filtered_motion.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_desc-filtered_motion.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-01_desc-preproc_design.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_desc-preproc_design.json +xcp_d/sub-01/func/sub-01_task-imagery_run-01_desc-preproc_design.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_outliers.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_outliers.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-4S1052Parcels_coverage.tsv @@ -130,18 +132,18 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Gor xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Gordon_measure-pearsoncorrelation_desc-33volumes_conmat.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Gordon_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Gordon_timeseries.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_coverage.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_conmat.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_desc-26volumes_conmat.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_desc-33volumes_conmat.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_reho.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP_measure-pearsoncorrelation_desc-26volumes_conmat.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP_measure-pearsoncorrelation_desc-33volumes_conmat.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-HCP_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_coverage.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_conmat.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_desc-26volumes_conmat.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_desc-33volumes_conmat.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_reho.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_desc-linc_qc.csv xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_res-2_desc-denoisedSmoothed_bold.json xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_res-2_desc-denoisedSmoothed_bold.nii.gz @@ -151,8 +153,8 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_res-2_reh xcp_d/sub-01/func/sub-01_task-imagery_run-01_space-MNI152NLin2009cAsym_res-2_reho.nii.gz xcp_d/sub-01/func/sub-01_task-imagery_run-02_desc-filtered_motion.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_desc-filtered_motion.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-02_desc-preproc_design.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_desc-preproc_design.json +xcp_d/sub-01/func/sub-01_task-imagery_run-02_desc-preproc_design.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_outliers.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_outliers.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-4S1052Parcels_coverage.tsv @@ -227,18 +229,18 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Gor xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Gordon_measure-pearsoncorrelation_desc-33volumes_conmat.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Gordon_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Gordon_timeseries.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_coverage.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_conmat.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_desc-26volumes_conmat.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_desc-33volumes_conmat.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_reho.tsv -xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP_coverage.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP_measure-pearsoncorrelation_desc-26volumes_conmat.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP_measure-pearsoncorrelation_desc-33volumes_conmat.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP_reho.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-HCP_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_coverage.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_conmat.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_desc-26volumes_conmat.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_desc-33volumes_conmat.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_reho.tsv +xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_desc-linc_qc.csv xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_desc-denoisedSmoothed_bold.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_desc-denoisedSmoothed_bold.nii.gz @@ -246,28 +248,42 @@ xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_des xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_desc-denoised_bold.nii.gz xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_reho.json xcp_d/sub-01/func/sub-01_task-imagery_run-02_space-MNI152NLin2009cAsym_res-2_reho.nii.gz +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S1052Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S1052Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S152Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S152Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S252Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S252Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S352Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S352Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S452Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S452Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S552Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S552Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S652Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S652Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S752Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S752Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S852Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S852Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S952Parcels_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-4S952Parcels_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-Glasser_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-Glasser_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-Gordon_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-Gordon_timeseries.tsv -xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-HCP_timeseries.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-HCP_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.json +xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_res-2_desc-denoisedSmoothed_bold.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_res-2_desc-denoisedSmoothed_bold.nii.gz xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_res-2_desc-denoised_bold.json xcp_d/sub-01/func/sub-01_task-imagery_space-MNI152NLin2009cAsym_res-2_desc-denoised_bold.nii.gz xcp_d/sub-01/func/sub-01_task-rest_desc-filtered_motion.json xcp_d/sub-01/func/sub-01_task-rest_desc-filtered_motion.tsv -xcp_d/sub-01/func/sub-01_task-rest_desc-preproc_design.tsv xcp_d/sub-01/func/sub-01_task-rest_desc-preproc_design.json +xcp_d/sub-01/func/sub-01_task-rest_desc-preproc_design.tsv xcp_d/sub-01/func/sub-01_task-rest_outliers.json xcp_d/sub-01/func/sub-01_task-rest_outliers.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-4S1052Parcels_coverage.tsv @@ -342,18 +358,18 @@ xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Gordon_measur xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Gordon_measure-pearsoncorrelation_desc-33volumes_conmat.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Gordon_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Gordon_timeseries.tsv -xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_coverage.tsv -xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_conmat.tsv -xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_desc-26volumes_conmat.tsv -xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_desc-33volumes_conmat.tsv -xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_reho.tsv -xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_coverage.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_measure-pearsoncorrelation_desc-26volumes_conmat.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_measure-pearsoncorrelation_desc-33volumes_conmat.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_reho.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-HCP_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_coverage.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_conmat.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_desc-26volumes_conmat.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_desc-33volumes_conmat.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_reho.tsv +xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_desc-linc_qc.csv xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_res-2_desc-denoisedSmoothed_bold.json xcp_d/sub-01/func/sub-01_task-rest_space-MNI152NLin2009cAsym_res-2_desc-denoisedSmoothed_bold.nii.gz diff --git a/xcp_d/tests/data/test_fmriprep_without_freesurfer_outputs.txt b/xcp_d/tests/data/test_fmriprep_without_freesurfer_outputs.txt index a608fa821..cf124bb75 100644 --- a/xcp_d/tests/data/test_fmriprep_without_freesurfer_outputs.txt +++ b/xcp_d/tests/data/test_fmriprep_without_freesurfer_outputs.txt @@ -22,10 +22,10 @@ xcp_d/atlas-Glasser_dseg.json xcp_d/atlas-Glasser_dseg.tsv xcp_d/atlas-Gordon_dseg.json xcp_d/atlas-Gordon_dseg.tsv -xcp_d/atlas-Tian_dseg.json -xcp_d/atlas-Tian_dseg.tsv xcp_d/atlas-HCP_dseg.json xcp_d/atlas-HCP_dseg.tsv +xcp_d/atlas-Tian_dseg.json +xcp_d/atlas-Tian_dseg.tsv xcp_d/dataset_description.json xcp_d/desc-linc_qc.json xcp_d/logs @@ -45,8 +45,8 @@ xcp_d/space-MNI152NLin2009cAsym_atlas-4S852Parcels_dseg.nii.gz xcp_d/space-MNI152NLin2009cAsym_atlas-4S952Parcels_dseg.nii.gz xcp_d/space-MNI152NLin2009cAsym_atlas-Glasser_dseg.nii.gz xcp_d/space-MNI152NLin2009cAsym_atlas-Gordon_dseg.nii.gz -xcp_d/space-MNI152NLin2009cAsym_atlas-Tian_dseg.nii.gz xcp_d/space-MNI152NLin2009cAsym_atlas-HCP_dseg.nii.gz +xcp_d/space-MNI152NLin2009cAsym_atlas-Tian_dseg.nii.gz xcp_d/sub-01 xcp_d/sub-01.html xcp_d/sub-01/anat @@ -54,8 +54,8 @@ xcp_d/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_desc-preproc_T1w.nii.gz xcp_d/sub-01/anat/sub-01_space-MNI152NLin2009cAsym_dseg.nii.gz xcp_d/sub-01/func xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_desc-dcan_qc.hdf5 -xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_desc-preproc_design.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_desc-preproc_design.json +xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_desc-preproc_design.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_motion.json xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_motion.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_outliers.json @@ -108,14 +108,14 @@ xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_a xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-Gordon_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-Gordon_reho.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-Gordon_timeseries.tsv -xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-Tian_coverage.tsv -xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_conmat.tsv -xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-Tian_reho.tsv -xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-HCP_coverage.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-HCP_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-HCP_reho.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-HCP_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-Tian_coverage.tsv +xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_conmat.tsv +xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-Tian_reho.tsv +xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-denoisedSmoothed_bold.json xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-denoisedSmoothed_bold.nii.gz xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_desc-denoised_bold.json @@ -126,8 +126,8 @@ xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_d xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_reho.json xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-1_space-MNI152NLin2009cAsym_reho.nii.gz xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_desc-dcan_qc.hdf5 -xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_desc-preproc_design.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_desc-preproc_design.json +xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_desc-preproc_design.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_motion.json xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_motion.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_outliers.json @@ -180,14 +180,14 @@ xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_a xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-Gordon_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-Gordon_reho.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-Gordon_timeseries.tsv -xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-Tian_coverage.tsv -xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_conmat.tsv -xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-Tian_reho.tsv -xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-HCP_coverage.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-HCP_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-HCP_reho.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-HCP_timeseries.tsv +xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-Tian_coverage.tsv +xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-Tian_measure-pearsoncorrelation_conmat.tsv +xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-Tian_reho.tsv +xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_atlas-Tian_timeseries.tsv xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-denoisedSmoothed_bold.json xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-denoisedSmoothed_bold.nii.gz xcp_d/sub-01/func/sub-01_task-mixedgamblestask_run-2_space-MNI152NLin2009cAsym_desc-denoised_bold.json diff --git a/xcp_d/tests/data/test_nibabies_outputs.txt b/xcp_d/tests/data/test_nibabies_outputs.txt index 5e1ecb352..01ac6efca 100644 --- a/xcp_d/tests/data/test_nibabies_outputs.txt +++ b/xcp_d/tests/data/test_nibabies_outputs.txt @@ -22,10 +22,10 @@ xcp_d/atlas-Glasser_dseg.json xcp_d/atlas-Glasser_dseg.tsv xcp_d/atlas-Gordon_dseg.json xcp_d/atlas-Gordon_dseg.tsv -xcp_d/atlas-Tian_dseg.json -xcp_d/atlas-Tian_dseg.tsv xcp_d/atlas-HCP_dseg.json xcp_d/atlas-HCP_dseg.tsv +xcp_d/atlas-Tian_dseg.json +xcp_d/atlas-Tian_dseg.tsv xcp_d/dataset_description.json xcp_d/desc-linc_qc.json xcp_d/logs @@ -42,8 +42,8 @@ xcp_d/space-MNIInfant_atlas-4S852Parcels_cohort-1_dseg.nii.gz xcp_d/space-MNIInfant_atlas-4S952Parcels_cohort-1_dseg.nii.gz xcp_d/space-MNIInfant_atlas-Glasser_cohort-1_dseg.nii.gz xcp_d/space-MNIInfant_atlas-Gordon_cohort-1_dseg.nii.gz -xcp_d/space-MNIInfant_atlas-Tian_cohort-1_dseg.nii.gz xcp_d/space-MNIInfant_atlas-HCP_cohort-1_dseg.nii.gz +xcp_d/space-MNIInfant_atlas-Tian_cohort-1_dseg.nii.gz xcp_d/sub-01 xcp_d/sub-01.html xcp_d/sub-01/ses-1mo @@ -52,8 +52,8 @@ xcp_d/sub-01/ses-1mo/anat/sub-01_ses-1mo_run-001_space-MNIInfant_cohort-1_desc-p xcp_d/sub-01/ses-1mo/anat/sub-01_ses-1mo_run-001_space-MNIInfant_cohort-1_dseg.nii.gz xcp_d/sub-01/ses-1mo/func xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_desc-dcan_qc.hdf5 -xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_desc-preproc_design.tsv xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_desc-preproc_design.json +xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_desc-preproc_design.tsv xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_motion.json xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_motion.tsv xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_outliers.json @@ -118,16 +118,16 @@ xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfan xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-Gordon_cohort-1_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-Gordon_cohort-1_reho.tsv xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-Gordon_cohort-1_timeseries.tsv -xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-Tian_cohort-1_alff.tsv -xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-Tian_cohort-1_coverage.tsv -xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-Tian_cohort-1_measure-pearsoncorrelation_conmat.tsv -xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-Tian_cohort-1_reho.tsv -xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-Tian_cohort-1_timeseries.tsv xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-HCP_cohort-1_alff.tsv xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-HCP_cohort-1_coverage.tsv xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-HCP_cohort-1_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-HCP_cohort-1_reho.tsv xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-HCP_cohort-1_timeseries.tsv +xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-Tian_cohort-1_alff.tsv +xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-Tian_cohort-1_coverage.tsv +xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-Tian_cohort-1_measure-pearsoncorrelation_conmat.tsv +xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-Tian_cohort-1_reho.tsv +xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_atlas-Tian_cohort-1_timeseries.tsv xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_cohort-1_alff.json xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_cohort-1_alff.nii.gz xcp_d/sub-01/ses-1mo/func/sub-01_ses-1mo_task-rest_acq-PA_run-001_space-MNIInfant_cohort-1_desc-denoised_bold.json diff --git a/xcp_d/tests/data/test_pnc_cifti_outputs.txt b/xcp_d/tests/data/test_pnc_cifti_outputs.txt index a0aa19861..0efc25595 100644 --- a/xcp_d/tests/data/test_pnc_cifti_outputs.txt +++ b/xcp_d/tests/data/test_pnc_cifti_outputs.txt @@ -22,10 +22,10 @@ xcp_d/atlas-Glasser_dseg.json xcp_d/atlas-Glasser_dseg.tsv xcp_d/atlas-Gordon_dseg.json xcp_d/atlas-Gordon_dseg.tsv -xcp_d/atlas-Tian_dseg.json -xcp_d/atlas-Tian_dseg.tsv xcp_d/atlas-HCP_dseg.json xcp_d/atlas-HCP_dseg.tsv +xcp_d/atlas-Tian_dseg.json +xcp_d/atlas-Tian_dseg.tsv xcp_d/dataset_description.json xcp_d/desc-linc_qc.json xcp_d/logs @@ -42,8 +42,8 @@ xcp_d/space-fsLR_atlas-4S852Parcels_den-91k_dseg.dlabel.nii xcp_d/space-fsLR_atlas-4S952Parcels_den-91k_dseg.dlabel.nii xcp_d/space-fsLR_atlas-Glasser_den-91k_dseg.dlabel.nii xcp_d/space-fsLR_atlas-Gordon_den-91k_dseg.dlabel.nii -xcp_d/space-fsLR_atlas-Tian_den-91k_dseg.dlabel.nii xcp_d/space-fsLR_atlas-HCP_den-91k_dseg.dlabel.nii +xcp_d/space-fsLR_atlas-Tian_den-91k_dseg.dlabel.nii xcp_d/sub-1648798153 xcp_d/sub-1648798153.html xcp_d/sub-1648798153/ses-PNC1 @@ -103,8 +103,8 @@ xcp_d/sub-1648798153/ses-PNC1/func xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_desc-dcan_qc.hdf5 xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_desc-filtered_motion.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_desc-filtered_motion.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_design.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_design.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_design.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_outliers.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_outliers.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-4S1052Parcels_coverage.tsv @@ -191,13 +191,6 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Gordon_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Gordon_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Gordon_timeseries.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_coverage.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_den-91k_coverage.pscalar.nii -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_den-91k_measure-pearsoncorrelation_conmat.pconn.nii -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_den-91k_timeseries.ptseries.nii -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_measure-pearsoncorrelation_conmat.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_reho.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_timeseries.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-HCP_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-HCP_den-91k_coverage.pscalar.nii xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-HCP_den-91k_measure-pearsoncorrelation_conmat.pconn.nii @@ -205,6 +198,13 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-HCP_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-HCP_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-HCP_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_coverage.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_den-91k_coverage.pscalar.nii +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_den-91k_measure-pearsoncorrelation_conmat.pconn.nii +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_den-91k_timeseries.ptseries.nii +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_measure-pearsoncorrelation_conmat.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_reho.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_atlas-Tian_timeseries.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_desc-denoisedSmoothed_bold.dtseries.nii xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_desc-denoisedSmoothed_bold.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-fsLR_den-91k_desc-denoised_bold.dtseries.nii diff --git a/xcp_d/tests/data/test_pnc_cifti_t2wonly_outputs.txt b/xcp_d/tests/data/test_pnc_cifti_t2wonly_outputs.txt index 0d2c6cdcc..7d41a8ef8 100644 --- a/xcp_d/tests/data/test_pnc_cifti_t2wonly_outputs.txt +++ b/xcp_d/tests/data/test_pnc_cifti_t2wonly_outputs.txt @@ -22,10 +22,10 @@ xcp_d/atlas-Glasser_dseg.json xcp_d/atlas-Glasser_dseg.tsv xcp_d/atlas-Gordon_dseg.json xcp_d/atlas-Gordon_dseg.tsv -xcp_d/atlas-Tian_dseg.json -xcp_d/atlas-Tian_dseg.tsv xcp_d/atlas-HCP_dseg.json xcp_d/atlas-HCP_dseg.tsv +xcp_d/atlas-Tian_dseg.json +xcp_d/atlas-Tian_dseg.tsv xcp_d/dataset_description.json xcp_d/desc-linc_qc.json xcp_d/logs @@ -42,8 +42,8 @@ xcp_d/space-fsLR_atlas-4S852Parcels_den-91k_dseg.dlabel.nii xcp_d/space-fsLR_atlas-4S952Parcels_den-91k_dseg.dlabel.nii xcp_d/space-fsLR_atlas-Glasser_den-91k_dseg.dlabel.nii xcp_d/space-fsLR_atlas-Gordon_den-91k_dseg.dlabel.nii -xcp_d/space-fsLR_atlas-Tian_den-91k_dseg.dlabel.nii xcp_d/space-fsLR_atlas-HCP_den-91k_dseg.dlabel.nii +xcp_d/space-fsLR_atlas-Tian_den-91k_dseg.dlabel.nii xcp_d/sub-1648798153 xcp_d/sub-1648798153.html xcp_d/sub-1648798153/ses-PNC1 @@ -189,13 +189,6 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Gordon_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Gordon_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Gordon_timeseries.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_coverage.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_den-91k_coverage.pscalar.nii -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_den-91k_measure-pearsoncorrelation_conmat.pconn.nii -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_den-91k_timeseries.ptseries.nii -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_measure-pearsoncorrelation_conmat.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_reho.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_timeseries.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-HCP_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-HCP_den-91k_coverage.pscalar.nii xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-HCP_den-91k_measure-pearsoncorrelation_conmat.pconn.nii @@ -203,6 +196,13 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-HCP_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-HCP_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-HCP_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_coverage.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_den-91k_coverage.pscalar.nii +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_den-91k_measure-pearsoncorrelation_conmat.pconn.nii +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_den-91k_timeseries.ptseries.nii +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_measure-pearsoncorrelation_conmat.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_reho.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_atlas-Tian_timeseries.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_desc-denoisedSmoothed_bold.dtseries.nii xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_desc-denoisedSmoothed_bold.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-idemo_space-fsLR_den-91k_desc-denoised_bold.dtseries.nii diff --git a/xcp_d/tests/data/test_pnc_nifti_outputs.txt b/xcp_d/tests/data/test_pnc_nifti_outputs.txt index 1deb436ec..83f54c9bd 100644 --- a/xcp_d/tests/data/test_pnc_nifti_outputs.txt +++ b/xcp_d/tests/data/test_pnc_nifti_outputs.txt @@ -22,10 +22,10 @@ xcp_d/atlas-Glasser_dseg.json xcp_d/atlas-Glasser_dseg.tsv xcp_d/atlas-Gordon_dseg.json xcp_d/atlas-Gordon_dseg.tsv -xcp_d/atlas-Tian_dseg.json -xcp_d/atlas-Tian_dseg.tsv xcp_d/atlas-HCP_dseg.json xcp_d/atlas-HCP_dseg.tsv +xcp_d/atlas-Tian_dseg.json +xcp_d/atlas-Tian_dseg.tsv xcp_d/dataset_description.json xcp_d/desc-linc_qc.json xcp_d/logs @@ -42,8 +42,8 @@ xcp_d/space-MNI152NLin6Asym_atlas-4S852Parcels_res-2_dseg.nii.gz xcp_d/space-MNI152NLin6Asym_atlas-4S952Parcels_res-2_dseg.nii.gz xcp_d/space-MNI152NLin6Asym_atlas-Glasser_res-2_dseg.nii.gz xcp_d/space-MNI152NLin6Asym_atlas-Gordon_res-2_dseg.nii.gz -xcp_d/space-MNI152NLin6Asym_atlas-Tian_res-2_dseg.nii.gz xcp_d/space-MNI152NLin6Asym_atlas-HCP_res-2_dseg.nii.gz +xcp_d/space-MNI152NLin6Asym_atlas-Tian_res-2_dseg.nii.gz xcp_d/sub-1648798153 xcp_d/sub-1648798153.html xcp_d/sub-1648798153/ses-PNC1 @@ -53,8 +53,8 @@ xcp_d/sub-1648798153/ses-PNC1/anat/sub-1648798153_ses-PNC1_acq-refaced_space-MNI xcp_d/sub-1648798153/ses-PNC1/func xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_desc-filtered_motion.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_desc-filtered_motion.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_desc-preproc_design.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_desc-preproc_design.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_desc-preproc_design.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_outliers.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_outliers.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-4S1052Parcels_coverage.tsv @@ -129,18 +129,18 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Gordon_measure-pearsoncorrelation_desc-33volumes_conmat.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Gordon_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Gordon_timeseries.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_coverage.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_measure-pearsoncorrelation_conmat.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_measure-pearsoncorrelation_desc-26volumes_conmat.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_measure-pearsoncorrelation_desc-33volumes_conmat.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_reho.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_timeseries.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-HCP_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-HCP_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-HCP_measure-pearsoncorrelation_desc-26volumes_conmat.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-HCP_measure-pearsoncorrelation_desc-33volumes_conmat.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-HCP_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-HCP_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_coverage.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_measure-pearsoncorrelation_conmat.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_measure-pearsoncorrelation_desc-26volumes_conmat.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_measure-pearsoncorrelation_desc-33volumes_conmat.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_reho.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_atlas-Tian_timeseries.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_desc-linc_qc.csv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_res-2_desc-denoisedSmoothed_bold.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_res-2_desc-denoisedSmoothed_bold.nii.gz @@ -150,8 +150,8 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space- xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-frac2back_space-MNI152NLin6Asym_res-2_reho.nii.gz xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_desc-filtered_motion.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_desc-filtered_motion.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_desc-preproc_design.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_desc-preproc_design.json +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_desc-preproc_design.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_outliers.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_outliers.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-4S1052Parcels_coverage.tsv @@ -226,18 +226,18 @@ xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleb xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Gordon_measure-pearsoncorrelation_desc-33volumes_conmat.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Gordon_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Gordon_timeseries.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_coverage.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_measure-pearsoncorrelation_conmat.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_measure-pearsoncorrelation_desc-26volumes_conmat.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_measure-pearsoncorrelation_desc-33volumes_conmat.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_reho.tsv -xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_timeseries.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-HCP_coverage.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-HCP_measure-pearsoncorrelation_conmat.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-HCP_measure-pearsoncorrelation_desc-26volumes_conmat.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-HCP_measure-pearsoncorrelation_desc-33volumes_conmat.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-HCP_reho.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-HCP_timeseries.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_coverage.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_measure-pearsoncorrelation_conmat.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_measure-pearsoncorrelation_desc-26volumes_conmat.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_measure-pearsoncorrelation_desc-33volumes_conmat.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_reho.tsv +xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_atlas-Tian_timeseries.tsv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_desc-linc_qc.csv xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_res-2_desc-denoisedSmoothed_bold.json xcp_d/sub-1648798153/ses-PNC1/func/sub-1648798153_ses-PNC1_task-rest_acq-singleband_space-MNI152NLin6Asym_res-2_desc-denoisedSmoothed_bold.nii.gz diff --git a/xcp_d/workflows/concatenation.py b/xcp_d/workflows/concatenation.py index 5e837f68e..d0937d57f 100644 --- a/xcp_d/workflows/concatenation.py +++ b/xcp_d/workflows/concatenation.py @@ -1,4 +1,6 @@ """Workflows for concatenating postprocessed data.""" +import os + from nipype.interfaces import utility as niu from nipype.pipeline import engine as pe from niworkflows.engine.workflows import LiterateWorkflow as Workflow @@ -247,7 +249,7 @@ def init_concatenate_data_wf( InferBIDSURIs( numinputs=1, dataset_name="xcp_d", - dataset_path=output_dir, + dataset_path=os.path.join(output_dir, "xcp_d"), ), name="filtered_motion_sources", run_without_submitting=True, @@ -283,7 +285,7 @@ def init_concatenate_data_wf( InferBIDSURIs( numinputs=1, dataset_name="xcp_d", - dataset_path=output_dir, + dataset_path=os.path.join(output_dir, "xcp_d"), ), name="temporal_mask_sources", run_without_submitting=True, @@ -321,7 +323,7 @@ def init_concatenate_data_wf( InferBIDSURIs( numinputs=1, dataset_name="xcp_d", - dataset_path=output_dir, + dataset_path=os.path.join(output_dir, "xcp_d"), ), name="timeseries_sources", run_without_submitting=True, @@ -376,7 +378,7 @@ def init_concatenate_data_wf( InferBIDSURIs( numinputs=1, dataset_name="xcp_d", - dataset_path=output_dir, + dataset_path=os.path.join(output_dir, "xcp_d"), ), name="timeseries_ciftis_sources", run_without_submitting=True, @@ -467,7 +469,7 @@ def init_concatenate_data_wf( InferBIDSURIs( numinputs=1, dataset_name="xcp_d", - dataset_path=output_dir, + dataset_path=os.path.join(output_dir, "xcp_d"), ), name="censored_filtered_bold_sources", run_without_submitting=True, @@ -496,7 +498,7 @@ def init_concatenate_data_wf( InferBIDSURIs( numinputs=1, dataset_name="xcp_d", - dataset_path=output_dir, + dataset_path=os.path.join(output_dir, "xcp_d"), ), name="smoothed_denoised_bold_sources", run_without_submitting=True, @@ -527,7 +529,7 @@ def init_concatenate_data_wf( InferBIDSURIs( numinputs=1, dataset_name="xcp_d", - dataset_path=output_dir, + dataset_path=os.path.join(output_dir, "xcp_d"), ), name="interpolated_filtered_bold_sources", run_without_submitting=True,