diff --git a/xcp_d/workflows/execsummary.py b/xcp_d/workflows/execsummary.py index b87ed0a72..4760756f3 100644 --- a/xcp_d/workflows/execsummary.py +++ b/xcp_d/workflows/execsummary.py @@ -698,6 +698,21 @@ def init_plot_custom_slices_wf( underlay_file overlay_file name_source + + Notes + ----- + 1. Grab sub2atl_ROI.2.nii.gz from DCAN infant pipeline derivatives. + - TODO: Find the equivalent file from nibabies. + 2. Grab Atlas_ROIs.2.nii.gz from DCAN infant pipeline derivatives. + - TODO: Find the equivalent file from nibabies. + 3. Binarize Atlas_ROIs.2.nii.gz. + 4. Use slicer to overlay sub2atl_ROI.2.nii.gz onto the binarized Atlas_ROIs.2.nii.gz for + 3 x slices, 3 y slices, and 3 z slices. + 5. Combine the 9 slice images into a single gif with pngappend. + 6. Binarize sub2atl_ROI.2.nii.gz. + 7. Use slicer to overlay Atlas_ROIs.2.nii.gz onto the binarized sub2atl_ROI.2.nii.gz for + 3 x slices, 3 y slices, and 3 z slices. + 8. Combine the 9 slice images into a single gif with pngappend. """ # NOTE: These slices are almost certainly specific to a given MNI template and resolution. SINGLE_SLICES = ["x", "x", "x", "y", "y", "y", "z", "z", "z"]