From 64c10b016814af5b19b867711bfbc70a3f1d86c8 Mon Sep 17 00:00:00 2001 From: Taylor Salo Date: Tue, 3 Oct 2023 16:43:03 -0400 Subject: [PATCH] Update run.py --- xcp_d/cli/run.py | 32 -------------------------------- 1 file changed, 32 deletions(-) diff --git a/xcp_d/cli/run.py b/xcp_d/cli/run.py index 556392b51..3811f7a65 100644 --- a/xcp_d/cli/run.py +++ b/xcp_d/cli/run.py @@ -988,39 +988,7 @@ def build_workflow(opts, retval): ) retval["workflow"] = init_xcpd_wf( - layout=layout, - omp_nthreads=omp_nthreads, - fmri_dir=str(opts.fmri_dir), - high_pass=opts.lower_bpf, - low_pass=opts.upper_bpf, - bpf_order=opts.bpf_order, - bandpass_filter=opts.bandpass_filter, - motion_filter_type=opts.motion_filter_type, - motion_filter_order=opts.motion_filter_order, - band_stop_min=opts.band_stop_min, - band_stop_max=opts.band_stop_max, subject_list=subject_list, - work_dir=str(opts.work_dir), - task_id=opts.task_id, - bids_filters=opts.bids_filters, - despike=opts.despike, - smoothing=opts.smoothing, - params=opts.nuisance_regressors, - cifti=opts.cifti, - analysis_level=opts.analysis_level, - output_dir=str(opts.output_dir), - head_radius=opts.head_radius, - custom_confounds_folder=opts.custom_confounds, - dummy_scans=opts.dummy_scans, - random_seed=opts.random_seed, - fd_thresh=opts.fd_thresh, - process_surfaces=opts.process_surfaces, - dcan_qc=opts.dcan_qc, - input_type=opts.input_type, - min_coverage=opts.min_coverage, - min_time=opts.min_time, - exact_time=opts.exact_time, - combineruns=opts.combineruns, name="xcpd_wf", )