0.13.0RC1

0.13.0RC1 (January 19, 2021)

This version introduces major changes to the TOPUP/eddy workflow. Feedback would be greatly
appreciated!

• Added new algorithm for selecting b=0 images for distortion corretion (#202)
• Added the Patch2Self denoising method (#203, credit to @ShreyasFadnavis)
• Documentation has been expanded significantly (#212)
• Boilerplate for DWI preprocessing is greatly expanded (#200)

0.12.2

• Adds --dwi-only and --infant options to QSIPrep. #177

0.12.1

• Update from @richford to bump numpy version to match pyafq (#190)
• Additional bugfixes in sprite code
• PEP 8 fixes

0.12.0

Reintroduces interactive reports #188 and adds the fiber coherence index from DSI Studio #181

0.11.6

Adds bugfix for NUMPY_MMAP from @fredrmag (#172, #174, #175)

0.11.0

Major Change

Workflow defaults have changed. T1w-based spatial normalization is done by
default (disabled by --skip-t1-based-spatial-normalization) and dwi scans
are merged/concatenated before motion correction by default (disabled by --separate-all-dwis).

Minor Changes

• Deprecate some commandline arguments, change defaults (#168)
• Update Documentation (#168)
• Fix typo in workflow names (#162)
• Fix bug from 0.10.0 where ODFs were not appearing in plots (#160)

0.10.0

Adds support for oblique acquisitions.

0.9.0beta1

Beta version with additional options for HCP-style image averaging.

• Adds --distortion-group-merge option (#136)
• Added documentation (https://qsiprep.readthedocs.io/en/latest/preprocessing.html#preprocessing-hcp-style)

0.8.0

Fixes a memory bug that occurs when creating ODF reports (#112) and allows managed multi-threading in recon workflows.

0.7.2

• Bugfix: updates b=0 masking (#99)