manifest.json

{
	"name": "xcpengine-fw",
		"label":  "XCPENGINE: pipeline for processing of  structural and functional data.",
		"description": " The XCP imaging pipeline (XCP system) for  preprocessing of structural and functional data.",
		"version": "0.1.1_1.2.3",
	"inputs": {
		"antsct": {
			"base": "file",
			"description": "Structural output directory",
			"optional": true
		},
		"api_key": {
			"base": "api-key"
		},
		"designfile": {
			"base": "file",
			"description": "designfile: list all modules to run"
		},
		"taskfile": {
			"base": "file",
			"description": "eventtimes files with json  ",
			"optional": true
		},
		"fmriprepdir": {
			"base": "file",
			"description": "FMRIprep output directory",
			"optional": true
		},
		"custom_regressors": {
			"base": "file",
			"description": "custom regressors already convolved with hrf",
			"optional": true
		},
		"img": {
			"base": "file",
			"description": "asl or structural image ",
			"optional": true
		},
		"m0": {
			"base": "file",
			"description": "M0 images for cbf calibration",
			"optional": true
		}
	},
	"config": {
		"analysis_type": {
			"default": "fc",
			"description": " analysis type: [fc,struc,task,cbf]",
			"type": "string"
		},
		"task_name": {
			"default": "",
			"description": " name of the task to perform either task regression or task ",
			"type": "string"
		},
            "session": {
			"default": "",
			"description": "session ",
			"type": "string"
		},
		"space": {
			"default": "MNI152NLin2009cAsym",
			"description": "bold input space: either T1w or MNI152NLin2009cAsym",
			"type": "string"
		}
	},
	"author": "Ted Satterthwaite",
	"maintainer": "Ted Satterthwaite",
	"cite": "Ciric, Rastko and Rosen, Adon F. G. and Erus, Guray and Cieslak, Matthew and Adebimpe, Azeez and Cook, Philip A. and Bassett, Danielle S. and Davatzikos, Christos and Wolf, Daniel H. and Satterthwaite, Theodore D., Mitigating head motion artifact in functional connectivity MRI",
	"license": "Other",
	"source": "https://github.com/PennBBL/xcpEngine",
	"url": "https://xcpengine.readthedocs.io/",
	"custom": {
		"flywheel": {
			"suite": "PennBBL"
		},
		"gear-builder": {
			"category": "analysis",
			"image": "pennbbl/xcpengine"
		}
	}
}