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New workflow #62

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oganm opened this issue Jun 28, 2023 · 0 comments
Open

New workflow #62

oganm opened this issue Jun 28, 2023 · 0 comments

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@oganm
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oganm commented Jun 28, 2023 •
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Assumptions

  • There'll always be a matrix to score individual genes
  • We'll always want to compare that score to other genes within the dataset

Preprocessing

  • compile.R
  • term_fixes.R and create_fbm.R should be removed during next update
  • filters.R
  • package_data.R

Workflow

  • Precalculate scores, save as is (scores_contrast) and transposed (contrast) as file based storage
  • Calculate nulls using scores_contrast as input to generate_nulls. Default NULLs are included as package data
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@oganm