From 89864b28060b69fe7f98eeca828663e8f3e8ce45 Mon Sep 17 00:00:00 2001 From: cjain7 Date: Thu, 10 Sep 2020 02:52:04 -0400 Subject: [PATCH] revise example in README --- README.md | 3 ++- 1 file changed, 2 insertions(+), 1 deletion(-) diff --git a/README.md b/README.md index 11f4dca..b21acfb 100644 --- a/README.md +++ b/README.md @@ -64,6 +64,7 @@ Reference = [data/Escherichia_coli_str_K12_MG1655.fna] Query = [data/Shigella_flexneri_2a_01.fna] Kmer size = 16 Fragment length = 3000 +Threads = 1 ANI output file = fastani.out >>>>>>>>>>>>>>>>>> .... @@ -78,7 +79,7 @@ $ cat fastani.out data/Shigella_flexneri_2a_01.fna data/Escherichia_coli_str_K12_MG1655.fna 97.7507 1303 1608 ``` -Above output implies that the ANI estimate between *S. flexneri* and *E. coli* genomes is 97.7443. Out of the total 1608 sequence fragments from *S. flexneri* genome, 1305 were aligned as orthologous matches. +Above output implies that the ANI estimate between *S. flexneri* and *E. coli* genomes is 97.7507. Out of the total 1608 sequence fragments from *S. flexneri* genome, 1303 were aligned as orthologous matches. ### Visualize Conserved Regions b/w Two Genomes