From 88c0cf9f843bb8928750c1b6192c0308e73d38ad Mon Sep 17 00:00:00 2001
From: Sriram P C <sriram.pc@gmail.com>
Date: Fri, 28 Jul 2023 16:41:45 -0400
Subject: [PATCH] Rename the executable to lowercase f

---
 CMakeLists.txt | 48 ++++++++++++++++++++++++------------------------
 1 file changed, 24 insertions(+), 24 deletions(-)

diff --git a/CMakeLists.txt b/CMakeLists.txt
index 4c0b3d2..aeb6a52 100644
--- a/CMakeLists.txt
+++ b/CMakeLists.txt
@@ -5,8 +5,8 @@ project(FastANI
     LANGUAGES CXX)
 #
 # Main executable
-add_executable(FastANI src/cgi/core_genome_identity.cpp src/cgi/main.cpp)
-target_include_directories(FastANI PUBLIC "src/")
+add_executable(fastANI src/cgi/core_genome_identity.cpp src/cgi/main.cpp)
+target_include_directories(fastANI PUBLIC "src/")
 #
 # by default, static linking
 option(GSL_SHARED "Build using shared libraries" ON)
@@ -17,15 +17,15 @@ find_package(ZLIB 1.1 REQUIRED)
 if(${ZLIB_FOUND})
     message("Using zlib library v${ZLIB_VERSION_STRING}")
 endif(${ZLIB_FOUND})
-target_link_libraries(FastANI PUBLIC ZLIB::ZLIB)
+target_link_libraries(fastANI PUBLIC ZLIB::ZLIB)
 #
 # openmp dependency
 find_package(OpenMP)
 if(${OpenMP_CXX_FOUND})
     message("Using OpenMP_CXX v${OpenMP_CXX_VERSION}")
-    target_link_libraries(FastANI PUBLIC ${OpenMP_CXX_LIBRARIES})
-    target_include_directories(FastANI PUBLIC ${OpenMP_CXX_INCLUDE_DIRS})
-    target_compile_options(FastANI PUBLIC ${OpenMP_CXX_FLAGS})
+    target_link_libraries(fastANI PUBLIC ${OpenMP_CXX_LIBRARIES})
+    target_include_directories(fastANI PUBLIC ${OpenMP_CXX_INCLUDE_DIRS})
+    target_compile_options(fastANI PUBLIC ${OpenMP_CXX_FLAGS})
 else()
     message("NOTE: OpenMP not found; Compiling as a single threaded app...")
 endif(${OpenMP_CXX_FOUND})
@@ -35,23 +35,23 @@ find_package(GSL 1.6)
 if(${GSL_FOUND})
     message("GSL v${GSL_VERSION} Found: ${GSL_LIBDIR}")
     if(${GSL_SHARED})
-        target_link_libraries(FastANI PUBLIC ${GSL_LIBRARIES})
+        target_link_libraries(fastANI PUBLIC ${GSL_LIBRARIES})
     else()
         # GSL_LIBDIR is not documented
-        target_link_libraries(FastANI PUBLIC
+        target_link_libraries(fastANI PUBLIC
                 ${GSL_LIBDIR}/libgsl.a
                 ${GSL_LIBDIR}/libgslcblas.a)
     endif(${GSL_SHARED})
-    target_include_directories(FastANI PUBLIC ${GSL_INCLUDE_DIRS})
+    target_include_directories(fastANI PUBLIC ${GSL_INCLUDE_DIRS})
 else()
     set(Boost_USE_STATIC_LIBS        ON)  # only find static libs
     set(Boost_USE_DEBUG_LIBS        OFF)  # ignore debug libs and
     set(Boost_USE_RELEASE_LIBS       ON)  # only find release libs
     set(Boost_USE_MULTITHREADED      ON)
     find_package(Boost 1.45 REQUIRED COMPONENTS math_c99)
-    target_link_libraries(FastANI PUBLIC ${Boost_MATCH_C99_LIBRARY})
-    target_include_directories(FastANI PUBLIC ${Boost_INCLUDE_DIRS})
-    target_compile_definitions(FastANI PUBLIC USE_BOOST=1)
+    target_link_libraries(fastANI PUBLIC ${Boost_MATCH_C99_LIBRARY})
+    target_include_directories(fastANI PUBLIC ${Boost_INCLUDE_DIRS})
+    target_compile_definitions(fastANI PUBLIC USE_BOOST=1)
 endif(${GSL_FOUND})
 #
 #
@@ -59,29 +59,29 @@ if(${BUILD_TESTING})
     add_subdirectory(ext/Catch2)
     include(CTest)
     include(Catch)
-    add_executable(FastANITest tests/fastani_tests.cpp src/cgi/core_genome_identity.cpp)
-    target_include_directories(FastANITest PUBLIC "src/"
+    add_executable(fastANITest tests/fastani_tests.cpp src/cgi/core_genome_identity.cpp)
+    target_include_directories(fastANITest PUBLIC "src/"
                             ${OpenMP_CXX_INCLUDE_DIRS})
-    target_compile_options(FastANITest PUBLIC
+    target_compile_options(fastANITest PUBLIC
             --coverage -g -O0 -fprofile-arcs -ftest-coverage ${OpenMP_CXX_FLAGS})
-    target_link_libraries(FastANITest PRIVATE
+    target_link_libraries(fastANITest PRIVATE
                           Catch2::Catch2 Catch2::Catch2WithMain
                           ZLIB::ZLIB GSL::gsl GSL::gslcblas
                           ${OpenMP_CXX_LIBRARIES}
                           gcov)
-    catch_discover_tests(FastANITest)
+    catch_discover_tests(fastANITest)
     file(COPY tests/data DESTINATION ${CMAKE_CURRENT_BINARY_DIR})
-    add_custom_target(lcov lcov -c -d .. -o FastANITest.out
-                        COMMAND genhtml -o ../lcov/ FastANITest.out
-                        DEPENDS FastANITest)
-    add_custom_target(lcov2 lcov -c -d ./ -o FastANITest.info
-                        COMMAND lcov -e FastANITest.info "*/FastANI/src/*/*.cpp" "*/FastANI/src/*/*.hpp"  > coverage.info
+    add_custom_target(lcov lcov -c -d .. -o fastANITest.out
+                        COMMAND genhtml -o ../lcov/ fastANITest.out
+                        DEPENDS fastANITest)
+    add_custom_target(lcov2 lcov -c -d ./ -o fastANITest.info
+                        COMMAND lcov -e fastANITest.info "*/FastANI/src/*/*.cpp" "*/FastANI/src/*/*.hpp"  > coverage.info
                         COMMAND lcov --list coverage.info |tee coverage_list.txt
                         COMMAND lcov --summary coverage.info |tee coverage_summary.txt
-                        DEPENDS FastANITest)
+                        DEPENDS fastANITest)
 endif(${BUILD_TESTING})
 
-install(TARGETS FastANI DESTINATION bin)
+install(TARGETS fastANI DESTINATION bin)
 
 set(CPACK_GENERATOR "TGZ")
 set(CPACK_SOURCE_GENERATOR "TGZ")