From f536e96648cdb3794c081f3cc22448fd61eac985 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 12 Jun 2023 13:04:12 +0000 Subject: [PATCH 1/8] Bump pytest from 7.3.1 to 7.3.2 Bumps [pytest](https://github.com/pytest-dev/pytest) from 7.3.1 to 7.3.2. - [Release notes](https://github.com/pytest-dev/pytest/releases) - [Changelog](https://github.com/pytest-dev/pytest/blob/main/CHANGELOG.rst) - [Commits](https://github.com/pytest-dev/pytest/compare/7.3.1...7.3.2) --- updated-dependencies: - dependency-name: pytest dependency-type: direct:development update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- poetry.lock | 132 ++++------------------------------------------------ 1 file changed, 9 insertions(+), 123 deletions(-) diff --git a/poetry.lock b/poetry.lock index 9e740d2..7283969 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. [[package]] name = "alabaster" version = "0.7.13" description = "A configurable sidebar-enabled Sphinx theme" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -16,7 +15,6 @@ files = [ name = "appnope" version = "0.1.3" description = "Disable App Nap on macOS >= 10.9" -category = "dev" optional = false python-versions = "*" files = [ @@ -28,7 +26,6 @@ files = [ name = "astroid" version = "2.15.5" description = "An abstract syntax tree for Python with inference support." -category = "dev" optional = false python-versions = ">=3.7.2" files = [ @@ -48,7 +45,6 @@ wrapt = [ name = "astropy" version = "5.3" description = "Astronomy and astrophysics core library" -category = "main" optional = true python-versions = ">=3.9" files = [ @@ -93,7 +89,6 @@ test-all = ["coverage[toml]", "ipython (>=4.2)", "objgraph", "pytest (>=7.0)", " name = "asttokens" version = "2.2.1" description = "Annotate AST trees with source code positions" -category = "dev" optional = false python-versions = "*" files = [ @@ -111,7 +106,6 @@ test = ["astroid", "pytest"] name = "attrs" version = "23.1.0" description = "Classes Without Boilerplate" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -130,7 +124,6 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte name = "babel" version = "2.12.1" description = "Internationalization utilities" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -142,7 +135,6 @@ files = [ name = "backcall" version = "0.2.0" description = "Specifications for callback functions passed in to an API" -category = "dev" optional = false python-versions = "*" files = [ @@ -154,7 +146,6 @@ files = [ name = "beautifulsoup4" version = "4.12.2" description = "Screen-scraping library" -category = "dev" optional = false python-versions = ">=3.6.0" files = [ @@ -173,7 +164,6 @@ lxml = ["lxml"] name = "black" version = "23.3.0" description = "The uncompromising code formatter." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -222,7 +212,6 @@ uvloop = ["uvloop (>=0.15.2)"] name = "bleach" version = "6.0.0" description = "An easy safelist-based HTML-sanitizing tool." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -241,7 +230,6 @@ css = ["tinycss2 (>=1.1.0,<1.2)"] name = "certifi" version = "2023.5.7" description = "Python package for providing Mozilla's CA Bundle." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -253,7 +241,6 @@ files = [ name = "cffi" version = "1.15.1" description = "Foreign Function Interface for Python calling C code." -category = "main" optional = false python-versions = "*" files = [ @@ -330,7 +317,6 @@ pycparser = "*" name = "charset-normalizer" version = "3.1.0" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." -category = "dev" optional = false python-versions = ">=3.7.0" files = [ @@ -415,7 +401,6 @@ files = [ name = "click" version = "8.1.3" description = "Composable command line interface toolkit" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -430,7 +415,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""} name = "colorama" version = "0.4.6" description = "Cross-platform colored terminal text." -category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" files = [ @@ -442,7 +426,6 @@ files = [ name = "comm" version = "0.1.3" description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -462,7 +445,6 @@ typing = ["mypy (>=0.990)"] name = "coverage" version = "7.2.7" description = "Code coverage measurement for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -538,7 +520,6 @@ toml = ["tomli"] name = "debugpy" version = "1.6.7" description = "An implementation of the Debug Adapter Protocol for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -566,7 +547,6 @@ files = [ name = "decorator" version = "5.1.1" description = "Decorators for Humans" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -578,7 +558,6 @@ files = [ name = "defusedxml" version = "0.7.1" description = "XML bomb protection for Python stdlib modules" -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -590,7 +569,6 @@ files = [ name = "dill" version = "0.3.6" description = "serialize all of python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -605,7 +583,6 @@ graph = ["objgraph (>=1.7.2)"] name = "docutils" version = "0.19" description = "Docutils -- Python Documentation Utilities" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -617,7 +594,6 @@ files = [ name = "exceptiongroup" version = "1.1.1" description = "Backport of PEP 654 (exception groups)" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -632,7 +608,6 @@ test = ["pytest (>=6)"] name = "executing" version = "1.2.0" description = "Get the currently executing AST node of a frame, and other information" -category = "dev" optional = false python-versions = "*" files = [ @@ -647,7 +622,6 @@ tests = ["asttokens", "littleutils", "pytest", "rich"] name = "fastjsonschema" version = "2.17.1" description = "Fastest Python implementation of JSON schema" -category = "dev" optional = false python-versions = "*" files = [ @@ -662,7 +636,6 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc name = "flake8" version = "6.0.0" description = "the modular source code checker: pep8 pyflakes and co" -category = "dev" optional = false python-versions = ">=3.8.1" files = [ @@ -679,7 +652,6 @@ pyflakes = ">=3.0.0,<3.1.0" name = "furo" version = "2023.5.20" description = "A clean customisable Sphinx documentation theme." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -697,7 +669,6 @@ sphinx-basic-ng = "*" name = "greenlet" version = "2.0.2" description = "Lightweight in-process concurrent programming" -category = "main" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" files = [ @@ -771,7 +742,6 @@ test = ["objgraph", "psutil"] name = "idna" version = "3.4" description = "Internationalized Domain Names in Applications (IDNA)" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -783,7 +753,6 @@ files = [ name = "imagesize" version = "1.4.1" description = "Getting image size from png/jpeg/jpeg2000/gif file" -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -795,7 +764,6 @@ files = [ name = "iniconfig" version = "2.0.0" description = "brain-dead simple config-ini parsing" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -807,7 +775,6 @@ files = [ name = "ipykernel" version = "6.23.1" description = "IPython Kernel for Jupyter" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -821,7 +788,7 @@ comm = ">=0.1.1" debugpy = ">=1.6.5" ipython = ">=7.23.1" jupyter-client = ">=6.1.12" -jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0" matplotlib-inline = ">=0.1" nest-asyncio = "*" packaging = "*" @@ -841,7 +808,6 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio" name = "ipython" version = "8.13.2" description = "IPython: Productive Interactive Computing" -category = "dev" optional = false python-versions = ">=3.9" files = [ @@ -880,7 +846,6 @@ test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.21)", "pa name = "ipywidgets" version = "8.0.6" description = "Jupyter interactive widgets" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -902,7 +867,6 @@ test = ["ipykernel", "jsonschema", "pytest (>=3.6.0)", "pytest-cov", "pytz"] name = "isort" version = "5.12.0" description = "A Python utility / library to sort Python imports." -category = "dev" optional = false python-versions = ">=3.8.0" files = [ @@ -920,7 +884,6 @@ requirements-deprecated-finder = ["pip-api", "pipreqs"] name = "jedi" version = "0.18.2" description = "An autocompletion tool for Python that can be used for text editors." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -940,7 +903,6 @@ testing = ["Django (<3.1)", "attrs", "colorama", "docopt", "pytest (<7.0.0)"] name = "jinja2" version = "3.1.2" description = "A very fast and expressive template engine." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -958,7 +920,6 @@ i18n = ["Babel (>=2.7)"] name = "jsonschema" version = "4.17.3" description = "An implementation of JSON Schema validation for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -978,7 +939,6 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339- name = "jupyter-client" version = "8.2.0" description = "Jupyter protocol implementation and client libraries" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -987,7 +947,7 @@ files = [ ] [package.dependencies] -jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0" python-dateutil = ">=2.8.2" pyzmq = ">=23.0" tornado = ">=6.2" @@ -1001,7 +961,6 @@ test = ["coverage", "ipykernel (>=6.14)", "mypy", "paramiko", "pre-commit", "pyt name = "jupyter-core" version = "5.3.0" description = "Jupyter core package. A base package on which Jupyter projects rely." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1022,7 +981,6 @@ test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] name = "jupyter-sphinx" version = "0.4.0" description = "Jupyter Sphinx Extensions" -category = "dev" optional = false python-versions = ">= 3.6" files = [ @@ -1041,7 +999,6 @@ Sphinx = ">=2" name = "jupyterlab-pygments" version = "0.2.2" description = "Pygments theme using JupyterLab CSS variables" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1053,7 +1010,6 @@ files = [ name = "jupyterlab-widgets" version = "3.0.7" description = "Jupyter interactive widgets for JupyterLab" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1065,7 +1021,6 @@ files = [ name = "lazy-object-proxy" version = "1.9.0" description = "A fast and thorough lazy object proxy." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1111,7 +1066,6 @@ files = [ name = "livereload" version = "2.6.3" description = "Python LiveReload is an awesome tool for web developers" -category = "dev" optional = false python-versions = "*" files = [ @@ -1127,7 +1081,6 @@ tornado = {version = "*", markers = "python_version > \"2.7\""} name = "markdown-it-py" version = "2.2.0" description = "Python port of markdown-it. Markdown parsing, done right!" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1152,7 +1105,6 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"] name = "markupsafe" version = "2.1.2" description = "Safely add untrusted strings to HTML/XML markup." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1212,7 +1164,6 @@ files = [ name = "matplotlib-inline" version = "0.1.6" description = "Inline Matplotlib backend for Jupyter" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -1227,7 +1178,6 @@ traitlets = "*" name = "mccabe" version = "0.7.0" description = "McCabe checker, plugin for flake8" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -1239,7 +1189,6 @@ files = [ name = "mdit-py-plugins" version = "0.3.5" description = "Collection of plugins for markdown-it-py" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1259,7 +1208,6 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"] name = "mdurl" version = "0.1.2" description = "Markdown URL utilities" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1271,7 +1219,6 @@ files = [ name = "mistune" version = "2.0.5" description = "A sane Markdown parser with useful plugins and renderers" -category = "dev" optional = false python-versions = "*" files = [ @@ -1283,7 +1230,6 @@ files = [ name = "mypy" version = "1.3.0" description = "Optional static typing for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1330,7 +1276,6 @@ reports = ["lxml"] name = "mypy-extensions" version = "1.0.0" description = "Type system extensions for programs checked with the mypy type checker." -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -1342,7 +1287,6 @@ files = [ name = "myst-parser" version = "1.0.0" description = "An extended [CommonMark](https://spec.commonmark.org/) compliant parser," -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1369,7 +1313,6 @@ testing-docutils = ["pygments", "pytest (>=7,<8)", "pytest-param-files (>=0.3.4, name = "nbclient" version = "0.8.0" description = "A client library for executing notebooks. Formerly nbconvert's ExecutePreprocessor." -category = "dev" optional = false python-versions = ">=3.8.0" files = [ @@ -1379,7 +1322,7 @@ files = [ [package.dependencies] jupyter-client = ">=6.1.12" -jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0" nbformat = ">=5.1" traitlets = ">=5.4" @@ -1392,7 +1335,6 @@ test = ["flaky", "ipykernel (>=6.19.3)", "ipython", "ipywidgets", "nbconvert (>= name = "nbconvert" version = "7.4.0" description = "Converting Jupyter Notebooks" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1430,7 +1372,6 @@ webpdf = ["pyppeteer (>=1,<1.1)"] name = "nbformat" version = "5.8.0" description = "The Jupyter Notebook format" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1452,7 +1393,6 @@ test = ["pep440", "pre-commit", "pytest", "testpath"] name = "nest-asyncio" version = "1.5.6" description = "Patch asyncio to allow nested event loops" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -1464,7 +1404,6 @@ files = [ name = "numpy" version = "1.24.3" description = "Fundamental package for array computing in Python" -category = "main" optional = true python-versions = ">=3.8" files = [ @@ -1502,7 +1441,6 @@ files = [ name = "packaging" version = "23.1" description = "Core utilities for Python packages" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -1514,7 +1452,6 @@ files = [ name = "pandocfilters" version = "1.5.0" description = "Utilities for writing pandoc filters in python" -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -1526,7 +1463,6 @@ files = [ name = "parso" version = "0.8.3" description = "A Python Parser" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -1542,7 +1478,6 @@ testing = ["docopt", "pytest (<6.0.0)"] name = "pathspec" version = "0.11.1" description = "Utility library for gitignore style pattern matching of file paths." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1554,7 +1489,6 @@ files = [ name = "pexpect" version = "4.8.0" description = "Pexpect allows easy control of interactive console applications." -category = "dev" optional = false python-versions = "*" files = [ @@ -1569,7 +1503,6 @@ ptyprocess = ">=0.5" name = "pickleshare" version = "0.7.5" description = "Tiny 'shelve'-like database with concurrency support" -category = "dev" optional = false python-versions = "*" files = [ @@ -1581,7 +1514,6 @@ files = [ name = "platformdirs" version = "3.5.1" description = "A small Python package for determining appropriate platform-specific dirs, e.g. a \"user data dir\"." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1597,7 +1529,6 @@ test = ["appdirs (==1.4.4)", "covdefaults (>=2.3)", "pytest (>=7.3.1)", "pytest- name = "pluggy" version = "1.0.0" description = "plugin and hook calling mechanisms for python" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -1613,7 +1544,6 @@ testing = ["pytest", "pytest-benchmark"] name = "prompt-toolkit" version = "3.0.38" description = "Library for building powerful interactive command lines in Python" -category = "dev" optional = false python-versions = ">=3.7.0" files = [ @@ -1628,7 +1558,6 @@ wcwidth = "*" name = "psutil" version = "5.9.5" description = "Cross-platform lib for process and system monitoring in Python." -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -1655,7 +1584,6 @@ test = ["enum34", "ipaddress", "mock", "pywin32", "wmi"] name = "ptyprocess" version = "0.7.0" description = "Run a subprocess in a pseudo terminal" -category = "dev" optional = false python-versions = "*" files = [ @@ -1667,7 +1595,6 @@ files = [ name = "pure-eval" version = "0.2.2" description = "Safely evaluate AST nodes without side effects" -category = "dev" optional = false python-versions = "*" files = [ @@ -1682,7 +1609,6 @@ tests = ["pytest"] name = "pycodestyle" version = "2.10.0" description = "Python style guide checker" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -1694,7 +1620,6 @@ files = [ name = "pycparser" version = "2.21" description = "C parser in Python" -category = "main" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -1706,7 +1631,6 @@ files = [ name = "pyerfa" version = "2.0.0.3" description = "Python bindings for ERFA" -category = "main" optional = true python-versions = ">=3.7" files = [ @@ -1763,7 +1687,6 @@ test = ["pytest", "pytest-doctestplus (>=0.7)"] name = "pyflakes" version = "3.0.1" description = "passive checker of Python programs" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -1775,7 +1698,6 @@ files = [ name = "pygments" version = "2.15.1" description = "Pygments is a syntax highlighting package written in Python." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1790,7 +1712,6 @@ plugins = ["importlib-metadata"] name = "pylint" version = "2.17.4" description = "python code static checker" -category = "dev" optional = false python-versions = ">=3.7.2" files = [ @@ -1819,7 +1740,6 @@ testutils = ["gitpython (>3)"] name = "pyrsistent" version = "0.19.3" description = "Persistent/Functional/Immutable data structures" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1854,14 +1774,13 @@ files = [ [[package]] name = "pytest" -version = "7.3.1" +version = "7.3.2" description = "pytest: simple powerful testing with Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ - {file = "pytest-7.3.1-py3-none-any.whl", hash = "sha256:3799fa815351fea3a5e96ac7e503a96fa51cc9942c3753cda7651b93c1cfa362"}, - {file = "pytest-7.3.1.tar.gz", hash = "sha256:434afafd78b1d78ed0addf160ad2b77a30d35d4bdf8af234fe621919d9ed15e3"}, + {file = "pytest-7.3.2-py3-none-any.whl", hash = "sha256:cdcbd012c9312258922f8cd3f1b62a6580fdced17db6014896053d47cddf9295"}, + {file = "pytest-7.3.2.tar.gz", hash = "sha256:ee990a3cc55ba808b80795a79944756f315c67c12b56abd3ac993a7b8c17030b"}, ] [package.dependencies] @@ -1873,13 +1792,12 @@ pluggy = ">=0.12,<2.0" tomli = {version = ">=1.0.0", markers = "python_version < \"3.11\""} [package.extras] -testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "xmlschema"] +testing = ["argcomplete", "attrs (>=19.2.0)", "hypothesis (>=3.56)", "mock", "nose", "pygments (>=2.7.2)", "requests", "setuptools", "xmlschema"] [[package]] name = "pytest-cov" version = "4.1.0" description = "Pytest plugin for measuring coverage." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1898,7 +1816,6 @@ testing = ["fields", "hunter", "process-tests", "pytest-xdist", "six", "virtuale name = "python-dateutil" version = "2.8.2" description = "Extensions to the standard Python datetime module" -category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,>=2.7" files = [ @@ -1913,7 +1830,6 @@ six = ">=1.5" name = "pywin32" version = "306" description = "Python for Window Extensions" -category = "dev" optional = false python-versions = "*" files = [ @@ -1937,7 +1853,6 @@ files = [ name = "pyyaml" version = "6.0" description = "YAML parser and emitter for Python" -category = "main" optional = false python-versions = ">=3.6" files = [ @@ -1987,7 +1902,6 @@ files = [ name = "pyzmq" version = "25.1.0" description = "Python bindings for 0MQ" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2077,7 +1991,6 @@ cffi = {version = "*", markers = "implementation_name == \"pypy\""} name = "requests" version = "2.31.0" description = "Python HTTP for Humans." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2099,7 +2012,6 @@ use-chardet-on-py3 = ["chardet (>=3.0.2,<6)"] name = "six" version = "1.16.0" description = "Python 2 and 3 compatibility utilities" -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*" files = [ @@ -2111,7 +2023,6 @@ files = [ name = "snowballstemmer" version = "2.2.0" description = "This package provides 29 stemmers for 28 languages generated from Snowball algorithms." -category = "dev" optional = false python-versions = "*" files = [ @@ -2123,7 +2034,6 @@ files = [ name = "soupsieve" version = "2.4.1" description = "A modern CSS selector implementation for Beautiful Soup." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2135,7 +2045,6 @@ files = [ name = "sphinx" version = "6.2.1" description = "Python documentation generator" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -2170,7 +2079,6 @@ test = ["cython", "filelock", "html5lib", "pytest (>=4.6)"] name = "sphinx-autobuild" version = "2021.3.14" description = "Rebuild Sphinx documentation on changes, with live-reload in the browser." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -2190,7 +2098,6 @@ test = ["pytest", "pytest-cov"] name = "sphinx-basic-ng" version = "1.0.0b1" description = "A modern skeleton for Sphinx themes." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2208,7 +2115,6 @@ docs = ["furo", "ipython", "myst-parser", "sphinx-copybutton", "sphinx-inline-ta name = "sphinx-copybutton" version = "0.5.2" description = "Add a copy button to each of your code cells." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2227,7 +2133,6 @@ rtd = ["ipython", "myst-nb", "sphinx", "sphinx-book-theme", "sphinx-examples"] name = "sphinxcontrib-applehelp" version = "1.0.4" description = "sphinxcontrib-applehelp is a Sphinx extension which outputs Apple help books" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -2243,7 +2148,6 @@ test = ["pytest"] name = "sphinxcontrib-devhelp" version = "1.0.2" description = "sphinxcontrib-devhelp is a sphinx extension which outputs Devhelp document." -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -2259,7 +2163,6 @@ test = ["pytest"] name = "sphinxcontrib-htmlhelp" version = "2.0.1" description = "sphinxcontrib-htmlhelp is a sphinx extension which renders HTML help files" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -2275,7 +2178,6 @@ test = ["html5lib", "pytest"] name = "sphinxcontrib-jsmath" version = "1.0.1" description = "A sphinx extension which renders display math in HTML via JavaScript" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -2290,7 +2192,6 @@ test = ["flake8", "mypy", "pytest"] name = "sphinxcontrib-qthelp" version = "1.0.3" description = "sphinxcontrib-qthelp is a sphinx extension which outputs QtHelp document." -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -2306,7 +2207,6 @@ test = ["pytest"] name = "sphinxcontrib-serializinghtml" version = "1.1.5" description = "sphinxcontrib-serializinghtml is a sphinx extension which outputs \"serialized\" HTML files (json and pickle)." -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -2322,7 +2222,6 @@ test = ["pytest"] name = "sqlalchemy" version = "2.0.15" description = "Database Abstraction Library" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -2370,7 +2269,7 @@ files = [ ] [package.dependencies] -greenlet = {version = "!=0.4.17", markers = "platform_machine == \"aarch64\" or platform_machine == \"ppc64le\" or platform_machine == \"x86_64\" or platform_machine == \"amd64\" or platform_machine == \"AMD64\" or platform_machine == \"win32\" or platform_machine == \"WIN32\""} +greenlet = {version = "!=0.4.17", markers = "platform_machine == \"win32\" or platform_machine == \"WIN32\" or platform_machine == \"AMD64\" or platform_machine == \"amd64\" or platform_machine == \"x86_64\" or platform_machine == \"ppc64le\" or platform_machine == \"aarch64\""} typing-extensions = ">=4.2.0" [package.extras] @@ -2400,7 +2299,6 @@ sqlcipher = ["sqlcipher3-binary"] name = "stack-data" version = "0.6.2" description = "Extract data from python stack frames and tracebacks for informative displays" -category = "dev" optional = false python-versions = "*" files = [ @@ -2420,7 +2318,6 @@ tests = ["cython", "littleutils", "pygments", "pytest", "typeguard"] name = "tinycss2" version = "1.2.1" description = "A tiny CSS parser" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2439,7 +2336,6 @@ test = ["flake8", "isort", "pytest"] name = "tomli" version = "2.0.1" description = "A lil' TOML parser" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2451,7 +2347,6 @@ files = [ name = "tomlkit" version = "0.11.8" description = "Style preserving TOML library" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2463,7 +2358,6 @@ files = [ name = "tornado" version = "6.3.2" description = "Tornado is a Python web framework and asynchronous networking library, originally developed at FriendFeed." -category = "dev" optional = false python-versions = ">= 3.8" files = [ @@ -2484,7 +2378,6 @@ files = [ name = "traitlets" version = "5.9.0" description = "Traitlets Python configuration system" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2500,7 +2393,6 @@ test = ["argcomplete (>=2.0)", "pre-commit", "pytest", "pytest-mock"] name = "typing-extensions" version = "4.6.3" description = "Backported and Experimental Type Hints for Python 3.7+" -category = "main" optional = false python-versions = ">=3.7" files = [ @@ -2512,7 +2404,6 @@ files = [ name = "urllib3" version = "2.0.2" description = "HTTP library with thread-safe connection pooling, file post, and more." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2530,7 +2421,6 @@ zstd = ["zstandard (>=0.18.0)"] name = "wcwidth" version = "0.2.6" description = "Measures the displayed width of unicode strings in a terminal" -category = "dev" optional = false python-versions = "*" files = [ @@ -2542,7 +2432,6 @@ files = [ name = "webencodings" version = "0.5.1" description = "Character encoding aliases for legacy web content" -category = "dev" optional = false python-versions = "*" files = [ @@ -2554,7 +2443,6 @@ files = [ name = "widgetsnbextension" version = "4.0.7" description = "Jupyter interactive widgets for Jupyter Notebook" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -2566,7 +2454,6 @@ files = [ name = "wrapt" version = "1.15.0" description = "Module for decorators, wrappers and monkey patching." -category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,>=2.7" files = [ @@ -2651,7 +2538,6 @@ files = [ name = "zstandard" version = "0.21.0" description = "Zstandard bindings for Python" -category = "main" optional = false python-versions = ">=3.7" files = [ From cb8c4f6c10c8053c3033cf630caf1fb920913c27 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 12 Jun 2023 13:06:37 +0000 Subject: [PATCH 2/8] Bump sqlalchemy from 2.0.15 to 2.0.16 Bumps [sqlalchemy](https://github.com/sqlalchemy/sqlalchemy) from 2.0.15 to 2.0.16. - [Release notes](https://github.com/sqlalchemy/sqlalchemy/releases) - [Changelog](https://github.com/sqlalchemy/sqlalchemy/blob/main/CHANGES.rst) - [Commits](https://github.com/sqlalchemy/sqlalchemy/commits) --- updated-dependencies: - dependency-name: sqlalchemy dependency-type: direct:production update-type: version-update:semver-patch ... Signed-off-by: dependabot[bot] --- poetry.lock | 209 ++++++++++++---------------------------------------- 1 file changed, 48 insertions(+), 161 deletions(-) diff --git a/poetry.lock b/poetry.lock index 9e740d2..edf618a 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,10 +1,9 @@ -# This file is automatically @generated by Poetry 1.4.2 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. [[package]] name = "alabaster" version = "0.7.13" description = "A configurable sidebar-enabled Sphinx theme" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -16,7 +15,6 @@ files = [ name = "appnope" version = "0.1.3" description = "Disable App Nap on macOS >= 10.9" -category = "dev" optional = false python-versions = "*" files = [ @@ -28,7 +26,6 @@ files = [ name = "astroid" version = "2.15.5" description = "An abstract syntax tree for Python with inference support." -category = "dev" optional = false python-versions = ">=3.7.2" files = [ @@ -48,7 +45,6 @@ wrapt = [ name = "astropy" version = "5.3" description = "Astronomy and astrophysics core library" -category = "main" optional = true python-versions = ">=3.9" files = [ @@ -93,7 +89,6 @@ test-all = ["coverage[toml]", "ipython (>=4.2)", "objgraph", "pytest (>=7.0)", " name = "asttokens" version = "2.2.1" description = "Annotate AST trees with source code positions" -category = "dev" optional = false python-versions = "*" files = [ @@ -111,7 +106,6 @@ test = ["astroid", "pytest"] name = "attrs" version = "23.1.0" description = "Classes Without Boilerplate" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -130,7 +124,6 @@ tests-no-zope = ["cloudpickle", "hypothesis", "mypy (>=1.1.1)", "pympler", "pyte name = "babel" version = "2.12.1" description = "Internationalization utilities" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -142,7 +135,6 @@ files = [ name = "backcall" version = "0.2.0" description = "Specifications for callback functions passed in to an API" -category = "dev" optional = false python-versions = "*" files = [ @@ -154,7 +146,6 @@ files = [ name = "beautifulsoup4" version = "4.12.2" description = "Screen-scraping library" -category = "dev" optional = false python-versions = ">=3.6.0" files = [ @@ -173,7 +164,6 @@ lxml = ["lxml"] name = "black" version = "23.3.0" description = "The uncompromising code formatter." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -222,7 +212,6 @@ uvloop = ["uvloop (>=0.15.2)"] name = "bleach" version = "6.0.0" description = "An easy safelist-based HTML-sanitizing tool." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -241,7 +230,6 @@ css = ["tinycss2 (>=1.1.0,<1.2)"] name = "certifi" version = "2023.5.7" description = "Python package for providing Mozilla's CA Bundle." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -253,7 +241,6 @@ files = [ name = "cffi" version = "1.15.1" description = "Foreign Function Interface for Python calling C code." -category = "main" optional = false python-versions = "*" files = [ @@ -330,7 +317,6 @@ pycparser = "*" name = "charset-normalizer" version = "3.1.0" description = "The Real First Universal Charset Detector. Open, modern and actively maintained alternative to Chardet." -category = "dev" optional = false python-versions = ">=3.7.0" files = [ @@ -415,7 +401,6 @@ files = [ name = "click" version = "8.1.3" description = "Composable command line interface toolkit" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -430,7 +415,6 @@ colorama = {version = "*", markers = "platform_system == \"Windows\""} name = "colorama" version = "0.4.6" description = "Cross-platform colored terminal text." -category = "dev" optional = false python-versions = "!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*,!=3.5.*,!=3.6.*,>=2.7" files = [ @@ -442,7 +426,6 @@ files = [ name = "comm" version = "0.1.3" description = "Jupyter Python Comm implementation, for usage in ipykernel, xeus-python etc." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -462,7 +445,6 @@ typing = ["mypy (>=0.990)"] name = "coverage" version = "7.2.7" description = "Code coverage measurement for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -538,7 +520,6 @@ toml = ["tomli"] name = "debugpy" version = "1.6.7" description = "An implementation of the Debug Adapter Protocol for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -566,7 +547,6 @@ files = [ name = "decorator" version = "5.1.1" description = "Decorators for Humans" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -578,7 +558,6 @@ files = [ name = "defusedxml" version = "0.7.1" description = "XML bomb protection for Python stdlib modules" -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*, !=3.4.*" files = [ @@ -590,7 +569,6 @@ files = [ name = "dill" version = "0.3.6" description = "serialize all of python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -605,7 +583,6 @@ graph = ["objgraph (>=1.7.2)"] name = "docutils" version = "0.19" description = "Docutils -- Python Documentation Utilities" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -617,7 +594,6 @@ files = [ name = "exceptiongroup" version = "1.1.1" description = "Backport of PEP 654 (exception groups)" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -632,7 +608,6 @@ test = ["pytest (>=6)"] name = "executing" version = "1.2.0" description = "Get the currently executing AST node of a frame, and other information" -category = "dev" optional = false python-versions = "*" files = [ @@ -647,7 +622,6 @@ tests = ["asttokens", "littleutils", "pytest", "rich"] name = "fastjsonschema" version = "2.17.1" description = "Fastest Python implementation of JSON schema" -category = "dev" optional = false python-versions = "*" files = [ @@ -662,7 +636,6 @@ devel = ["colorama", "json-spec", "jsonschema", "pylint", "pytest", "pytest-benc name = "flake8" version = "6.0.0" description = "the modular source code checker: pep8 pyflakes and co" -category = "dev" optional = false python-versions = ">=3.8.1" files = [ @@ -679,7 +652,6 @@ pyflakes = ">=3.0.0,<3.1.0" name = "furo" version = "2023.5.20" description = "A clean customisable Sphinx documentation theme." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -697,7 +669,6 @@ sphinx-basic-ng = "*" name = "greenlet" version = "2.0.2" description = "Lightweight in-process concurrent programming" -category = "main" optional = false python-versions = ">=2.7,!=3.0.*,!=3.1.*,!=3.2.*,!=3.3.*,!=3.4.*" files = [ @@ -771,7 +742,6 @@ test = ["objgraph", "psutil"] name = "idna" version = "3.4" description = "Internationalized Domain Names in Applications (IDNA)" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -783,7 +753,6 @@ files = [ name = "imagesize" version = "1.4.1" description = "Getting image size from png/jpeg/jpeg2000/gif file" -category = "dev" optional = false python-versions = ">=2.7, !=3.0.*, !=3.1.*, !=3.2.*, !=3.3.*" files = [ @@ -795,7 +764,6 @@ files = [ name = "iniconfig" version = "2.0.0" description = "brain-dead simple config-ini parsing" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -807,7 +775,6 @@ files = [ name = "ipykernel" version = "6.23.1" description = "IPython Kernel for Jupyter" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -821,7 +788,7 @@ comm = ">=0.1.1" debugpy = ">=1.6.5" ipython = ">=7.23.1" jupyter-client = ">=6.1.12" -jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0" matplotlib-inline = ">=0.1" nest-asyncio = "*" packaging = "*" @@ -841,7 +808,6 @@ test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio" name = "ipython" version = "8.13.2" description = "IPython: Productive Interactive Computing" -category = "dev" optional = false python-versions = ">=3.9" files = [ @@ -880,7 +846,6 @@ test-extra = ["curio", "matplotlib (!=3.2.0)", "nbformat", "numpy (>=1.21)", "pa name = "ipywidgets" version = "8.0.6" description = "Jupyter interactive widgets" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -902,7 +867,6 @@ test = ["ipykernel", "jsonschema", "pytest (>=3.6.0)", "pytest-cov", "pytz"] name = "isort" version = "5.12.0" description = "A Python utility / library to sort Python imports." -category = "dev" optional = false python-versions = ">=3.8.0" files = [ @@ -920,7 +884,6 @@ requirements-deprecated-finder = ["pip-api", "pipreqs"] name = "jedi" version = "0.18.2" description = "An autocompletion tool for Python that can be used for text editors." -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -940,7 +903,6 @@ testing = ["Django (<3.1)", "attrs", "colorama", "docopt", "pytest (<7.0.0)"] name = "jinja2" version = "3.1.2" description = "A very fast and expressive template engine." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -958,7 +920,6 @@ i18n = ["Babel (>=2.7)"] name = "jsonschema" version = "4.17.3" description = "An implementation of JSON Schema validation for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -978,7 +939,6 @@ format-nongpl = ["fqdn", "idna", "isoduration", "jsonpointer (>1.13)", "rfc3339- name = "jupyter-client" version = "8.2.0" description = "Jupyter protocol implementation and client libraries" -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -987,7 +947,7 @@ files = [ ] [package.dependencies] -jupyter-core = ">=4.12,<5.0.0 || >=5.1.0" +jupyter-core = ">=4.12,<5.0.dev0 || >=5.1.dev0" python-dateutil = ">=2.8.2" pyzmq = ">=23.0" tornado = ">=6.2" @@ -1001,7 +961,6 @@ test = ["coverage", "ipykernel (>=6.14)", "mypy", "paramiko", "pre-commit", "pyt name = "jupyter-core" version = "5.3.0" description = "Jupyter core package. A base package on which Jupyter projects rely." -category = "dev" optional = false python-versions = ">=3.8" files = [ @@ -1022,7 +981,6 @@ test = ["ipykernel", "pre-commit", "pytest", "pytest-cov", "pytest-timeout"] name = "jupyter-sphinx" version = "0.4.0" description = "Jupyter Sphinx Extensions" -category = "dev" optional = false python-versions = ">= 3.6" files = [ @@ -1041,7 +999,6 @@ Sphinx = ">=2" name = "jupyterlab-pygments" version = "0.2.2" description = "Pygments theme using JupyterLab CSS variables" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1053,7 +1010,6 @@ files = [ name = "jupyterlab-widgets" version = "3.0.7" description = "Jupyter interactive widgets for JupyterLab" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1065,7 +1021,6 @@ files = [ name = "lazy-object-proxy" version = "1.9.0" description = "A fast and thorough lazy object proxy." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1111,7 +1066,6 @@ files = [ name = "livereload" version = "2.6.3" description = "Python LiveReload is an awesome tool for web developers" -category = "dev" optional = false python-versions = "*" files = [ @@ -1127,7 +1081,6 @@ tornado = {version = "*", markers = "python_version > \"2.7\""} name = "markdown-it-py" version = "2.2.0" description = "Python port of markdown-it. Markdown parsing, done right!" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1152,7 +1105,6 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"] name = "markupsafe" version = "2.1.2" description = "Safely add untrusted strings to HTML/XML markup." -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1212,7 +1164,6 @@ files = [ name = "matplotlib-inline" version = "0.1.6" description = "Inline Matplotlib backend for Jupyter" -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -1227,7 +1178,6 @@ traitlets = "*" name = "mccabe" version = "0.7.0" description = "McCabe checker, plugin for flake8" -category = "dev" optional = false python-versions = ">=3.6" files = [ @@ -1239,7 +1189,6 @@ files = [ name = "mdit-py-plugins" version = "0.3.5" description = "Collection of plugins for markdown-it-py" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1259,7 +1208,6 @@ testing = ["coverage", "pytest", "pytest-cov", "pytest-regressions"] name = "mdurl" version = "0.1.2" description = "Markdown URL utilities" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1271,7 +1219,6 @@ files = [ name = "mistune" version = "2.0.5" description = "A sane Markdown parser with useful plugins and renderers" -category = "dev" optional = false python-versions = "*" files = [ @@ -1283,7 +1230,6 @@ files = [ name = "mypy" version = "1.3.0" description = "Optional static typing for Python" -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1330,7 +1276,6 @@ reports = ["lxml"] name = "mypy-extensions" version = "1.0.0" description = "Type system extensions for programs checked with the mypy type checker." -category = "dev" optional = false python-versions = ">=3.5" files = [ @@ -1342,7 +1287,6 @@ files = [ name = "myst-parser" version = "1.0.0" description = "An extended [CommonMark](https://spec.commonmark.org/) compliant parser," -category = "dev" optional = false python-versions = ">=3.7" files = [ @@ -1369,7 +1313,6 @@ testing-docutils = ["pygments", "pytest (>=7,<8)", "pytest-param-files (>=0.3.4, name = "nbclient" version = "0.8.0" description = "A client library for executing notebooks. 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jupyter-sphinx = "^0.4.0" From ebf7dc1d4da567067fb1f8795a7adb72e9370356 Mon Sep 17 00:00:00 2001 From: Alex Hadley Date: Wed, 21 Jun 2023 14:04:28 -0700 Subject: [PATCH 4/8] Fix myst-parser version in pyproject.toml --- poetry.lock | 2 +- pyproject.toml | 2 +- 2 files changed, 2 insertions(+), 2 deletions(-) diff --git a/poetry.lock b/poetry.lock index 32a7682..6606995 100644 --- a/poetry.lock +++ b/poetry.lock @@ -2599,4 +2599,4 @@ astropy = ["astropy"] [metadata] lock-version = "2.0" python-versions = "^3.10" -content-hash = "461868ede64589325be9a3fadfb7191a25e5581d1d2a47a9fdf51c541b3c2278" +content-hash = "2c9908b400093e5e9ef682869aa215c76b51ffe9b7f8405d766794a6fcee7664" diff --git a/pyproject.toml b/pyproject.toml index bb34235..714557e 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -27,7 +27,7 @@ black = "^23.3.0" [tool.poetry.group.docs.dependencies] sphinx = "6.2.1" -myst-parser = ">=1,<3" +myst-parser = "^2.0.0" furo = "^2023.5.20" sphinx-copybutton = "^0.5.2" 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"^1.4.1" black = "^23.3.0" [tool.poetry.group.docs.dependencies] -sphinx = "6.2.1" +sphinx = "^7.0.1" myst-parser = "^2.0.0" furo = "^2023.5.20" sphinx-copybutton = "^0.5.2" From 7a2f9db1703e52351106acfe172538c93b440f8a Mon Sep 17 00:00:00 2001 From: Alex Hadley Date: Wed, 28 Jun 2023 19:39:37 -0700 Subject: [PATCH 6/8] Add ParamDB.path and ParamDB.latest_commit --- CHANGELOG.md | 5 +++++ paramdb/_database.py | 23 ++++++++++++++++++++--- tests/test_database.py | 32 ++++++++++++++++++++++++++++++++ 3 files changed, 57 insertions(+), 3 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 74f13c0..090807b 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,6 +7,11 @@ project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). ## [Unreleased] +### Added + +- `ParamDB.path` to retrieve the database path. +- `ParamDB.latest_commit` to retrieve the latest commit entry. + ## [0.8.0] (June 9 2023) ### Changed diff --git a/paramdb/_database.py b/paramdb/_database.py index a77e317..07c9071 100644 --- a/paramdb/_database.py +++ b/paramdb/_database.py @@ -144,10 +144,16 @@ class Root(Struct): """ def __init__(self, path: str): + self._path = path self._engine = create_engine(URL.create("sqlite+pysqlite", database=path)) self._Session = sessionmaker(self._engine) # pylint: disable=invalid-name _Base.metadata.create_all(self._engine) + @property + def path(self) -> str: + """Path of the database file.""" + return self._path + def commit(self, message: str, data: T) -> int: """ Commit the given data to the database with the given message and return the ID @@ -198,10 +204,9 @@ def load(self, commit_id: int | None = None, *, load_classes: bool = True) -> An if data is None: raise IndexError( f"cannot load most recent commit because database" - f" '{self._engine.url.database}' has no commits" + f" '{self._path}' has no commits" if commit_id is None - else f"commit {commit_id} does not exist in database" - f" '{self._engine.url.database}'" + else f"commit {commit_id} does not exist in database" f" '{self._path}'" ) return json.loads( _decompress(data), @@ -217,6 +222,18 @@ def num_commits(self) -> int: count = session.execute(select_stmt).scalar() return count if count is not None else 0 + @property + def latest_commit(self) -> CommitEntry | None: + """Latest commit added to the database, or None if the database is empty.""" + max_id_func = func.max(_Snapshot.id) # pylint: disable=not-callable + select_max_id = select(max_id_func).scalar_subquery() + select_stmt = select( + _Snapshot.id, _Snapshot.message, _Snapshot.timestamp + ).where(_Snapshot.id == select_max_id) + with self._Session() as session: + latest_entry = session.execute(select_stmt).mappings().first() + return None if latest_entry is None else CommitEntry(**latest_entry) + def commit_history( self, start: int | None = None, diff --git a/tests/test_database.py b/tests/test_database.py index 04bc4b2..0f055f0 100644 --- a/tests/test_database.py +++ b/tests/test_database.py @@ -48,6 +48,12 @@ def test_create_database(db_path: str) -> None: assert os.path.exists(db_path) +def test_path(db_path: str) -> None: + """Database path can be retrieved.""" + param_db = ParamDB[Any](db_path) + assert param_db.path == db_path + + def test_commit_not_json_serializable_fails(db_path: str) -> None: """Fails to commit a class that ParamDB does not know how to convert to JSON.""" @@ -271,6 +277,32 @@ def test_num_commits(db_path: str, param: CustomParam) -> None: assert param_db.num_commits == 10 +def test_empty_latest_commit(db_path: str) -> None: + """An empty database has a latest_commit of None.""" + param_db = ParamDB[CustomStruct](db_path) + assert param_db.latest_commit is None + + +def test_latest_commit(db_path: str, param: CustomParam) -> None: + """The database has the correct value of latest_commit after each commit.""" + param_db = ParamDB[CustomParam](db_path) + for i in range(10): + # Make the commit + message = f"Commit {i}" + start = time.time() + sleep_for_datetime() + commit_id = param_db.commit(message, param) + sleep_for_datetime() + end = time.time() + + # Assert latest_commit matches the commit that was just made + latest_commit = param_db.latest_commit + assert latest_commit is not None + assert latest_commit.id == commit_id + assert latest_commit.message == message + assert start < latest_commit.timestamp.timestamp() < end + + def test_empty_commit_history(db_path: str) -> None: """Loads an empty commit history from an empty database.""" param_db = ParamDB[CustomStruct](db_path) From 988f33b2f0aacf3b0c3c6bbd2b4cf9780e113897 Mon Sep 17 00:00:00 2001 From: Alex Hadley Date: Thu, 29 Jun 2023 10:33:27 -0700 Subject: [PATCH 7/8] Upgrade dependencies --- poetry.lock | 253 ++++++++++++++++++++++++------------------------- pyproject.toml | 2 +- 2 files changed, 126 insertions(+), 129 deletions(-) diff --git a/poetry.lock b/poetry.lock index 1f4a22a..c5c3c07 100644 --- a/poetry.lock +++ b/poetry.lock @@ -581,13 +581,13 @@ graph = 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"007fa17cf3a244d35879ed307c2167665d397f7b4240d04de11f12eb167141b8" diff --git a/pyproject.toml b/pyproject.toml index 29987ba..2e86ebd 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -9,7 +9,7 @@ repository = "https://github.com/PainterQubits/paramdb" [tool.poetry.dependencies] python = "^3.10" -typing-extensions = "^4.6.3" +typing-extensions = "^4.7.0" sqlalchemy = "^2.0.17" zstandard = "^0.21.0" astropy = {version = "^5.3", optional = true} From dce15fa5c1d244be8d0ec68634b867b79487aa36 Mon Sep 17 00:00:00 2001 From: Alex Hadley Date: Thu, 29 Jun 2023 10:34:57 -0700 Subject: [PATCH 8/8] Bump version from 0.8.0 to 0.9.0 --- CHANGELOG.md | 5 ++++- CITATION.cff | 4 ++-- docs/conf.py | 2 +- pyproject.toml | 2 +- 4 files changed, 8 insertions(+), 5 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index 090807b..6afe95f 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,6 +7,8 @@ project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). ## [Unreleased] +## [0.9.0] (June 29 2023) + ### Added - `ParamDB.path` to retrieve the database path. @@ -104,7 +106,8 @@ project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). - Database class `ParamDB` to store parameters in a SQLite file - Ability to retrieve the commit history as `CommitEntry` objects -[unreleased]: https://github.com/PainterQubits/paramdb/compare/v0.8.0...develop +[unreleased]: https://github.com/PainterQubits/paramdb/compare/v0.9.0...develop +[0.9.0]: https://github.com/PainterQubits/paramdb/releases/tag/v0.9.0 [0.8.0]: https://github.com/PainterQubits/paramdb/releases/tag/v0.8.0 [0.7.0]: https://github.com/PainterQubits/paramdb/releases/tag/v0.7.0 [0.6.0]: https://github.com/PainterQubits/paramdb/releases/tag/v0.6.0 diff --git a/CITATION.cff b/CITATION.cff index 2946409..3146d19 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -4,6 +4,6 @@ authors: - family-names: "Hadley" given-names: "Alex" title: "ParamDB" -version: 0.8.0 -date-released: 2023-06-09 +version: 0.9.0 +date-released: 2023-06-29 url: "https://github.com/PainterQubits/paramdb" diff --git a/docs/conf.py b/docs/conf.py index f648d6e..c607c86 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -4,7 +4,7 @@ project = "ParamDB" copyright = "2023, California Institute of Technology" author = "Alex Hadley" -release = "0.8.0" +release = "0.9.0" # General configuration extensions = [ diff --git a/pyproject.toml b/pyproject.toml index 2e86ebd..5435a6c 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -1,6 +1,6 @@ [tool.poetry] name = "paramdb" -version = "0.8.0" +version = "0.9.0" description = "Python package for storing and retrieving experiment parameters." authors = ["Alex Hadley "] license = "BSD-3-Clause"