From e33f6828fa5b2a62f2b6be636876d96ecf657c04 Mon Sep 17 00:00:00 2001 From: Alex Hadley Date: Wed, 27 Sep 2023 13:26:36 -0700 Subject: [PATCH 1/9] Upgrade dependencies --- poetry.lock | 809 +++++++++++++++++++++++-------------------------- pyproject.toml | 19 +- 2 files changed, 381 insertions(+), 447 deletions(-) diff --git a/poetry.lock b/poetry.lock index 7b98881..0da2f03 100644 --- a/poetry.lock +++ b/poetry.lock @@ -1,4 +1,4 @@ -# This file is automatically @generated by Poetry 1.5.1 and should not be changed by hand. +# This file is automatically @generated by Poetry 1.6.1 and should not be changed by hand. 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optional = true} +astropy = {version = "^5.3.3", optional = true} [tool.poetry.extras] astropy = ["astropy"] [tool.poetry.group.dev.dependencies] -pytest = "^7.4.0" +pytest = "^7.4.2" pytest-cov = "^4.1.0" flake8 = "^6.1.0" -pylint = "^2.17.5" +pylint = "^2.17.6" mypy = "^1.5.1" -black = "^23.7.0" +black = "^23.9.1" [tool.poetry.group.docs.dependencies] -sphinx = "^7.2.4" +sphinx = "^7.2.6" myst-parser = "^2.0.0" -furo = "^2023.8.19" +furo = "^2023.9.10" sphinx-copybutton = "^0.5.2" jupyter-sphinx = "^0.4.0" -ipykernel = "^6.25.1" sphinx-autobuild = "^2021.3.14" [tool.pytest.ini_options] From 6602d9b6aa3776ebd0c72d535b4bfd5bdbc4e31e Mon Sep 17 00:00:00 2001 From: Alex Hadley Date: Wed, 27 Sep 2023 14:06:31 -0700 Subject: [PATCH 2/9] Remove ipykernel from readthedocs --- .readthedocs.yaml | 3 +-- 1 file changed, 1 insertion(+), 2 deletions(-) diff --git a/.readthedocs.yaml b/.readthedocs.yaml index 67b9f26..f1f1fa9 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -6,11 +6,10 @@ build: python: "3.10" jobs: post_create_environment: - - pip install poetry==1.5.1 + - pip install poetry==1.6.1 - poetry config virtualenvs.create false post_install: - poetry install --without dev - - poetry run python -m ipykernel install --user sphinx: configuration: docs/conf.py From a877a7ef4c3584912d7e3b618c35a0c0d64150b7 Mon Sep 17 00:00:00 2001 From: Alex Hadley Date: Wed, 27 Sep 2023 14:44:14 -0700 Subject: [PATCH 3/9] Add pack ipykernel --- .readthedocs.yaml | 1 + poetry.lock | 99 ++++++++++++++++++++++++++++++++++++++++++++++- pyproject.toml | 1 + 3 files changed, 100 insertions(+), 1 deletion(-) diff --git a/.readthedocs.yaml b/.readthedocs.yaml index f1f1fa9..dfabf40 100644 --- a/.readthedocs.yaml +++ b/.readthedocs.yaml @@ -10,6 +10,7 @@ build: - poetry config virtualenvs.create false post_install: - poetry install --without dev + - poetry run python -m ipykernel install --user sphinx: configuration: docs/conf.py diff --git a/poetry.lock b/poetry.lock index 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+pyzmq = ">=20" +tornado = ">=6.1" +traitlets = ">=5.4.0" + +[package.extras] +cov = ["coverage[toml]", "curio", "matplotlib", "pytest-cov", "trio"] +docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinx-autodoc-typehints", "sphinxcontrib-github-alt", "sphinxcontrib-spelling", "trio"] +pyqt5 = ["pyqt5"] +pyside6 = ["pyside6"] +test = ["flaky", "ipyparallel", "pre-commit", "pytest (>=7.0)", "pytest-asyncio", "pytest-cov", "pytest-timeout"] + [[package]] name = "ipython" version = "8.15.0" @@ -1372,6 +1432,17 @@ traitlets = ">=5.1" docs = ["myst-parser", "pydata-sphinx-theme", "sphinx", "sphinxcontrib-github-alt", "sphinxcontrib-spelling"] test = ["pep440", "pre-commit", "pytest", "testpath"] +[[package]] +name = "nest-asyncio" +version = "1.5.8" +description = "Patch asyncio to allow nested event loops" +optional = false +python-versions = ">=3.5" +files = [ + {file = "nest_asyncio-1.5.8-py3-none-any.whl", hash = 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actions/checkout@v3 + uses: actions/checkout@v4 - name: Install Poetry run: pipx install poetry==${{ env.POETRY_VERSION }} diff --git a/.github/workflows/publish.yml b/.github/workflows/publish.yml index e5fa78c..3d001cf 100644 --- a/.github/workflows/publish.yml +++ b/.github/workflows/publish.yml @@ -12,7 +12,7 @@ jobs: runs-on: ubuntu-latest steps: - name: Checkout - uses: actions/checkout@v3 + uses: actions/checkout@v4 - name: Install Poetry run: pipx install poetry==${{ env.POETRY_VERSION }} From 4884ac0c66d5ee5d6dc9e0f21f2fbae62902d402 Mon Sep 17 00:00:00 2001 From: "dependabot[bot]" <49699333+dependabot[bot]@users.noreply.github.com> Date: Mon, 2 Oct 2023 12:20:39 +0000 Subject: [PATCH 5/9] Bump pylint from 2.17.6 to 2.17.7 Bumps [pylint](https://github.com/pylint-dev/pylint) from 2.17.6 to 2.17.7. - [Release notes](https://github.com/pylint-dev/pylint/releases) - [Commits](https://github.com/pylint-dev/pylint/compare/v2.17.6...v2.17.7) --- updated-dependencies: - dependency-name: pylint dependency-type: direct:development update-type: version-update:semver-patch ... 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pytest-cov = "^4.1.0" flake8 = "^6.1.0" -pylint = "^2.17.6" +pylint = "^3.0.0" mypy = "^1.5.1" black = "^23.9.1" From 5fb166bcb92a82852b21b5ad5151d24e532d0f7b Mon Sep 17 00:00:00 2001 From: Alex Hadley Date: Mon, 2 Oct 2023 11:56:59 -0700 Subject: [PATCH 7/9] Fix pylint error in Python 3.9 --- tests/helpers.py | 4 ++++ 1 file changed, 4 insertions(+) diff --git a/tests/helpers.py b/tests/helpers.py index 050392b..25a34b8 100644 --- a/tests/helpers.py +++ b/tests/helpers.py @@ -1,5 +1,9 @@ """Helper functions for paramdb tests.""" +# In Python 3.9, Pylint complains that field() cannot be used in parameter dataclasses, +# so we disable the rule here. +# pylint: disable=invalid-field-call + from __future__ import annotations from typing import Any from dataclasses import field From 697edd1145e3dd333f0d35f0bf3a70733f2c7f3b Mon Sep 17 00:00:00 2001 From: Alex Hadley Date: Mon, 6 Nov 2023 15:37:51 -0800 Subject: [PATCH 8/9] Upgrade dependencies --- .github/workflows/ci.yml | 4 +- 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= true - -[build-system] -requires = ["poetry-core"] -build-backend = "poetry.core.masonry.api" +[tool.pytest.ini_options] +addopts = ["--import-mode=importlib"] From 12569414d31890b8056eff19fb54c239620a157c Mon Sep 17 00:00:00 2001 From: Alex Hadley Date: Mon, 6 Nov 2023 15:47:14 -0800 Subject: [PATCH 9/9] Upgrade dependencies --- CHANGELOG.md | 9 ++++++++- CITATION.cff | 4 ++-- docs/conf.py | 2 +- pyproject.toml | 4 ++-- 4 files changed, 13 insertions(+), 6 deletions(-) diff --git a/CHANGELOG.md b/CHANGELOG.md index b62a607..6c06ee5 100644 --- a/CHANGELOG.md +++ b/CHANGELOG.md @@ -7,6 +7,12 @@ project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). ## [Unreleased] +## [0.10.1] (Nov 6 2023) + +### Added + +- Support for Python 3.12 + ## [0.10.0] (Aug 30 2023) ### Added @@ -124,7 +130,8 @@ project adheres to [Semantic Versioning](https://semver.org/spec/v2.0.0.html). - Database class `ParamDB` to store parameters in a SQLite file - Ability to retrieve the commit history as `CommitEntry` objects -[unreleased]: https://github.com/PainterQubits/paramdb/compare/v0.10.0...develop +[unreleased]: https://github.com/PainterQubits/paramdb/compare/v0.10.1...develop +[0.10.1]: https://github.com/PainterQubits/paramdb/releases/tag/v0.10.1 [0.10.0]: https://github.com/PainterQubits/paramdb/releases/tag/v0.10.0 [0.9.1]: https://github.com/PainterQubits/paramdb/releases/tag/v0.9.1 [0.9.0]: https://github.com/PainterQubits/paramdb/releases/tag/v0.9.0 diff --git a/CITATION.cff b/CITATION.cff index eaa4b9e..1bc2b0c 100644 --- a/CITATION.cff +++ b/CITATION.cff @@ -4,6 +4,6 @@ authors: - family-names: "Hadley" given-names: "Alex" title: "ParamDB" -version: 0.10.0 -date-released: 2023-08-30 +version: 0.10.1 +date-released: 2023-11-06 url: "https://github.com/PainterQubits/paramdb" diff --git a/docs/conf.py b/docs/conf.py index 1658e04..d431af9 100644 --- a/docs/conf.py +++ b/docs/conf.py @@ -4,7 +4,7 @@ project = "ParamDB" copyright = "2023, California Institute of Technology" author = "Alex Hadley" -release = "0.10.0" +release = "0.10.1" # General configuration extensions = [ diff --git a/pyproject.toml b/pyproject.toml index 3d9bff3..25a24a0 100644 --- a/pyproject.toml +++ b/pyproject.toml @@ -4,9 +4,9 @@ build-backend = "poetry.core.masonry.api" [tool.poetry] name = "paramdb" -version = "0.10.0" +version = "0.10.1" description = "Python package for storing and retrieving experiment parameters." -authors = ["Alex Hadley "] +authors = ["Alex Hadley "] license = "BSD-3-Clause" readme = "README.md" repository = "https://github.com/PainterQubits/paramdb"