preload-correlation.yml

name: Preload correlation data

on:
  workflow_call:
    outputs:
      cache-key:
        value: correlation
  
jobs:
  preload_correlation:
    runs-on: ubuntu-latest
    steps:
      - name: Set environment variables
        run: |
          echo "CORRELATION_DIR=$RUNNER_TEMP" >> $GITHUB_ENV

      - name: Cache reference data
        id: cache-ref
        uses: actions/cache@v4
        with:
          path: |
            ${{ env.CORRELATION_DIR }}/correlation37.pgen
            ${{ env.CORRELATION_DIR }}/correlation37.psam
            ${{ env.CORRELATION_DIR }}/correlation37.pvar.zst
            ${{ env.CORRELATION_DIR }}/PGS000018_hmPOS_GRCh37.txt.gz
            ${{ env.CORRELATION_DIR }}/PGS000027_hmPOS_GRCh37.txt.gz
            ${{ env.CORRELATION_DIR }}/PGS000137_hmPOS_GRCh37.txt.gz
            ${{ env.CORRELATION_DIR }}/PGS000727_hmPOS_GRCh37.txt.gz
            ${{ env.CORRELATION_DIR }}/PGS000728_hmPOS_GRCh37.txt.gz
            ${{ env.CORRELATION_DIR }}/PGS000729_hmPOS_GRCh37.txt.gz            
          key: correlation
          
      - name: Download reference data
        if: steps.cache-ref.outputs.cache-hit != 'true'        
        run: |
          wget -qnc -P $CORRELATION_DIR https://ftp.ebi.ac.uk/pub/databases/spot/pgs/resources/correlation.tar.zst
          tar -xf $CORRELATION_DIR/correlation.tar.zst -C $CORRELATION_DIR