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Merge pull request #591 from Ouranosinc/fix-rtd #1645

Merge pull request #591 from Ouranosinc/fix-rtd

Merge pull request #591 from Ouranosinc/fix-rtd #1645

Workflow file for this run

# run test suites
name: Tests
on:
- pull_request
- push
jobs:
# see: https://github.com/fkirc/skip-duplicate-actions
skip_duplicate:
continue-on-error: true
runs-on: ubuntu-latest
outputs:
should_skip: ${{ steps.skip_check.outputs.should_skip }}
steps:
- id: skip_check
uses: fkirc/skip-duplicate-actions@master
with:
concurrent_skipping: "same_content"
skip_after_successful_duplicate: "true"
do_not_skip: '["pull_request", "workflow_dispatch", "schedule"]'
# see: https://github.com/actions/setup-python
tests:
needs: skip_duplicate
if: ${{ needs.skip_duplicate.outputs.should_skip != 'true' }}
runs-on: ${{ matrix.os }}
continue-on-error: ${{ matrix.allow-failure }}
env:
# override make command to install directly in active python
CONDA_COMMAND: ""
services:
# Label used to access the service container
postgres:
image: postgres # DockerHub
env:
POSTGRES_USER: postgres
POSTGRES_PASSWORD: qwerty
ports:
- "5432:5432"
# Set health checks to wait until postgres has started
options: >-
--health-cmd pg_isready
--health-interval 10s
--health-timeout 5s
--health-retries 5
strategy:
matrix:
# os: [ubuntu-latest, windows-latest]
os: [ubuntu-latest]
python-version: ["3.7", "3.8", "3.9", "3.10", "3.11"]
allow-failure: [false]
test-case: [test-local]
# can use below option to set environment variables or makefile settings applied during test execution
test-option: [""]
include:
# linter tests
- os: ubuntu-latest
# FIXME:
# Not using 3.11 because of problems with pylint false-positives about missing builtin references.
# https://github.com/PyCQA/pylint/issues/6535
python-version: "3.10"
allow-failure: false
test-case: check
# remote test
- os: ubuntu-latest
python-version: "3.11"
allow-failure: true
test-case: start test-remote
# coverage test
- os: ubuntu-latest
python-version: "3.11"
allow-failure: false
test-case: coverage
# smoke test of Docker image
- os: ubuntu-latest
python-version: none
allow-failure: true
test-case: test-docker
# test allowed failing for legacy versions
- os: ubuntu-20.04
python-version: "3.5"
allow-failure: true
test-case: test-local
- os: ubuntu-20.04
python-version: "3.6"
allow-failure: true
test-case: test-local
# test allowed failing for recent versions
# - os: ubuntu-latest
# python-version: 3.12
# allow-failure: true
# test-case: test-local
steps:
- uses: actions/checkout@v2
with:
fetch-depth: "0"
- name: Setup Python
uses: actions/setup-python@v2
if: ${{ matrix.python-version != 'none' }}
with:
python-version: ${{ matrix.python-version }}
# run 'install-sys' by itself first even if other targets depend on it to setup pip
# this ensures that the auto-resolved PIP_XARGS will match the active pip version for following installs
- name: Install Package Managers
if: ${{ matrix.python-version != 'none' }}
run: make install-sys
- name: Install Dependencies
if: ${{ matrix.python-version != 'none' }}
run: make install-pkg install-req install-dev version
- name: Display Packages
if: ${{ matrix.python-version != 'none' }}
run: pip freeze
- name: Setup Environment Variables
uses: c-py/action-dotenv-to-setenv@v2
with:
env-file: ./ci/magpie.env
- name: Display Environment Variables
run: |
hash -r
env | sort
# run '-only' test variations since dependencies are preinstalled, skip some resolution time
- name: Run Tests
run: ${{ matrix.test-option }} make stop ${{ matrix.test-case }}-only
- name: Upload coverage report
uses: codecov/codecov-action@v2
if: ${{ success() && matrix.test-case == 'coverage' }}
with:
token: ${{ secrets.CODECOV_TOKEN }}
files: ./reports/coverage.xml
fail_ci_if_error: true
verbose: true