.pre-commit-config.yaml

---
repos:
  - repo: meta
    hooks:
      - id: check-useless-excludes
      # - id: check-hooks-apply  # Leave nbqa in here.
      # - id: identity  # Prints all files passed to pre-commits. Debugging.
  - repo: https://github.com/lyz-code/yamlfix
    rev: 1.17.0
    hooks:
      - id: yamlfix
  - repo: https://github.com/pre-commit/pre-commit-hooks
    rev: v5.0.0
    hooks:
      - id: check-added-large-files
        args: [--maxkb=25]
      - id: check-case-conflict
      - id: check-merge-conflict
      - id: check-vcs-permalinks
      - id: check-yaml
      - id: check-toml
      - id: debug-statements
      - id: end-of-file-fixer
      - id: fix-byte-order-marker
        types: [text]
      - id: forbid-submodules
      - id: mixed-line-ending
        args: [--fix=lf]
        description: Forces to replace line ending by the UNIX 'lf' character.
      - id: name-tests-test
        args: [--pytest-test-first]
      - id: trailing-whitespace
      - id: check-ast
      - id: check-docstring-first
  - repo: https://github.com/adrienverge/yamllint.git
    rev: v1.35.1
    hooks:
      - id: yamllint
  - repo: https://github.com/astral-sh/ruff-pre-commit
    rev: v0.6.9
    hooks:
      # Run the linter.
      - id: ruff
        types_or: [python, jupyter]
        args:
          - --fix
      # Run the formatter.
      - id: ruff-format
        types_or: [python, jupyter]
  - repo: https://github.com/kynan/nbstripout
    rev: 0.7.1
    hooks:
      - id: nbstripout
        args:
          - --extra-keys
          - metadata.kernelspec metadata.language_info.version metadata.vscode
  - repo: https://github.com/executablebooks/mdformat
    rev: 0.7.17
    hooks:
      - id: mdformat
        additional_dependencies: [mdformat-gfm, mdformat-gfm-alerts, mdformat-ruff]
        args: [--wrap, '88']
        files: (README\.md)
  - repo: https://github.com/executablebooks/mdformat
    rev: 0.7.17
    hooks:
      - id: mdformat
        additional_dependencies: [mdformat-myst, mdformat-ruff]
        args: [--wrap, '88']
        files: (docs_template/.)
  - repo: https://github.com/codespell-project/codespell
    rev: v2.3.0
    hooks:
      - id: codespell
  - repo: local
    hooks:
      - id: forbid-to-commit
        name: Don't commit common R artifacts
        entry: Cannot commit .Rhistory, .RData, .Rds or .rds.
        language: fail
        files: \.(Rhistory|RData|Rds|rds)$
        # `exclude: <regex>` to allow committing specific files{% endif %}
ci:
  autoupdate_schedule: monthly