From f20e80656010469bc381d463f43e865fce24f9a8 Mon Sep 17 00:00:00 2001 From: skchronicles Date: Fri, 5 Apr 2024 14:52:17 -0400 Subject: [PATCH] Use absolute path to strains fasta file --- .github/workflows/main.yaml | 2 +- 1 file changed, 1 insertion(+), 1 deletion(-) diff --git a/.github/workflows/main.yaml b/.github/workflows/main.yaml index 660f6a0..99a7dc5 100644 --- a/.github/workflows/main.yaml +++ b/.github/workflows/main.yaml @@ -35,7 +35,7 @@ jobs: /opt2/.tests/WT_S3_3.fastq.gz /opt2/.tests/WT_S3_4.fastq.gz \ /opt2/.tests/WT_S4.fastq.gz /opt2/.tests/WT_S5.fastq.gz \ --output /opt2/output --mode local --batch-id 2024-04-03 \ - --additional-strains resources/mpox_additional_strains.fa.gz \ + --additional-strains /opt2/resources/mpox_additional_strains.fa.gz \ --dry-run - name: View the pipeline config file run: |