codeql.yml

# For most projects, this workflow file will not need changing; you simply need
# to commit it to your repository.
#
# You may wish to alter this file to override the set of languages analyzed,
# or to provide custom queries or build logic.
#
# ******** NOTE ********
# We have attempted to detect the languages in your repository. Please check
# the `language` matrix defined below to confirm you have the correct set of
# supported CodeQL languages.
#
name: "CodeQL"

on:
  push:
    branches: [ "master" ]
  pull_request:
    # The branches below must be a subset of the branches above
    branches: [ "master" ]
  schedule:
    - cron: '42 6 * * 6'

env:
  QT_VERSION: 5.15.2
  FEATURES: -DBUILD_GPL_PLUGINS=ON -DWITH_COORDGEN=OFF

jobs:
  analyze:
    name: Analyze
    runs-on: ubuntu-latest
    permissions:
      actions: read
      contents: read
      security-events: write

    strategy:
      fail-fast: false
      matrix:
        language: [ 'cpp' ]
        # CodeQL supports [ 'cpp', 'csharp', 'go', 'java', 'javascript', 'python', 'ruby' ]
        # Use only 'java' to analyze code written in Java, Kotlin or both
        # Use only 'javascript' to analyze code written in JavaScript, TypeScript or both
        # Learn more about CodeQL language support at https://aka.ms/codeql-docs/language-support

    steps:
    - name: Checkout openchemistry
      uses: actions/checkout@v4
      with:
        repository: openchemistry/openchemistry
        submodules: recursive

    - name: Checkout avogadroapp
      uses: actions/checkout@v4
      with:
        path: avogadroapp

    - name: Checkout avogadrolibs
      uses: actions/checkout@v4
      with:
        repository: openchemistry/avogadrolibs
        path: avogadrolibs

    - name: Install Dependencies (Linux)
      if: runner.os == 'Linux'
      run: |
        sudo apt-get -qq update
        sudo apt-get -qq install ninja-build libeigen3-dev libboost-all-dev libglew-dev libxml2-dev 
        sudo apt-get -qq install qtbase5-dev qtchooser qt5-qmake qtbase5-dev-tools libqt5x11extras5-dev libqt5svg5-dev

    - name: Install Qt
      uses: jurplel/install-qt-action@v3
      with:
        cache: True
        version: ${{ env.QT_VERSION }}

    - name: Grab cache files
      uses: actions/cache@v4
      with:
        path: |
          ${{ runner.workspace }}/build/thirdparty
          ${{ runner.workspace }}/build/Downloads
        key: ${{ matrix.config.name }}-thirdparty

    - name: Configure
      run: |
        cmake $GITHUB_WORKSPACE ${{env.FEATURES}} -DCMAKE_BUILD_TYPE=RelWithDebInfo ${{matrix.config.cmake_flags}}
      shell: bash

    # Initializes the CodeQL tools for scanning.
    - name: Initialize CodeQL
      uses: github/codeql-action/init@v3
      with:
        languages: ${{ matrix.language }}
        source-root: ${{ github.workspace }}/avogadroapp
        queries: security-extended,security-and-quality
        config-file: ${{ github.workspace }}/avogadrolibs/.github/codeql-config.yml

    - name: Build
      run: |
        cmake --build . -j 4 --config RelWithDebInfo
      shell: bash

    - name: Perform CodeQL Analysis
      uses: github/codeql-action/analyze@v3
      with:
        category: "/language:${{matrix.language}}"
        checkout_path: ${{ github.workspace }}/avogadroapp