From 2594c92e9ce4ef777e5bd2772403ee43d64f98c6 Mon Sep 17 00:00:00 2001
From: Erik van Sebille <erikvansebille@gmail.com>
Date: Thu, 2 May 2024 15:15:08 +0200
Subject: [PATCH 1/3] First implementation of unit testing

---
 .../actions/install-plasticparcels/action.yml | 26 +++++++++++++++
 .github/workflows/unit_tests.yml              | 33 +++++++++++++++++++
 environment.yml                               |  8 +++++
 3 files changed, 67 insertions(+)
 create mode 100644 .github/actions/install-plasticparcels/action.yml
 create mode 100644 .github/workflows/unit_tests.yml
 create mode 100644 environment.yml

diff --git a/.github/actions/install-plasticparcels/action.yml b/.github/actions/install-plasticparcels/action.yml
new file mode 100644
index 0000000..a82c26f
--- /dev/null
+++ b/.github/actions/install-plasticparcels/action.yml
@@ -0,0 +1,26 @@
+name: Setup Conda and install plasticparcels
+description: >
+  In-repo composite action to setup Conda and install parcels. Installation of parcels relies on
+  `setup.py` file being available in the root. For general setup of Anaconda environments, just use
+  the `mamba-org/setup-micromamba@v1` action (setting C variables as required), or the `conda-incubator/setup-miniconda` action.
+inputs:
+  environment-file:
+    description: Conda environment file to use.
+    default: environment.yml
+  environment-name:
+    description: Name to use for the Conda environment
+    default: test
+runs:
+  using: "composite"
+  steps:
+    - name: Install micromamba (${{ inputs.environment-file }})
+      uses: mamba-org/setup-micromamba@v1
+      with:
+        environment-file: ${{ inputs.environment-file }}
+        environment-name: ${{ inputs.environment-name }}
+        channels: conda-forge
+        cache-environment: true
+        cache-downloads: true
+    - name: Install parcels
+      run: pip install .
+      shell: bash -el {0}
diff --git a/.github/workflows/unit_tests.yml b/.github/workflows/unit_tests.yml
new file mode 100644
index 0000000..1c46b43
--- /dev/null
+++ b/.github/workflows/unit_tests.yml
@@ -0,0 +1,33 @@
+name: unit-tests
+on:
+  push:
+    branches:
+      - "master"
+      - "test-me/*"
+  pull_request:
+    branches:
+      - "*"
+  schedule:
+    - cron: "0 7 * * 1" # Run every Monday at 7:00 UTC
+
+defaults:
+  run:
+    shell: bash -el {0}
+
+jobs:
+  unit-test:
+    name: Unittesting on ubuntu with python latest
+    runs-on: ubuntu-latest
+    strategy:
+      fail-fast: false
+    steps:
+      - name: Checkout
+        uses: actions/checkout@v3
+      - name: Setup Conda and parcels
+        uses: ./.github/actions/install-plasticparcels
+        with:
+          environment-file: environment.yml
+          environment-name: py3_parcels
+      - name: Unit test
+        run: |
+          run -m pytest -v -s tests
diff --git a/environment.yml b/environment.yml
new file mode 100644
index 0000000..8a576ae
--- /dev/null
+++ b/environment.yml
@@ -0,0 +1,8 @@
+name: plasticparcels
+channels:
+  - conda-forge
+dependencies:
+  - parcels>=3.0.2
+
+  # Testing
+  - pytest

From a413f3b7383bd31c7fcd4d5edc5651dc70d1cdeb Mon Sep 17 00:00:00 2001
From: Erik van Sebille <erikvansebille@gmail.com>
Date: Thu, 2 May 2024 15:21:40 +0200
Subject: [PATCH 2/3] Fixing run command in unit_tests.yml

---
 .github/workflows/unit_tests.yml | 2 +-
 1 file changed, 1 insertion(+), 1 deletion(-)

diff --git a/.github/workflows/unit_tests.yml b/.github/workflows/unit_tests.yml
index 1c46b43..874a78f 100644
--- a/.github/workflows/unit_tests.yml
+++ b/.github/workflows/unit_tests.yml
@@ -30,4 +30,4 @@ jobs:
           environment-name: py3_parcels
       - name: Unit test
         run: |
-          run -m pytest -v -s tests
+          python -m pytest -v -s tests

From 1ce8ac39b8da5806871cc5dbe764ec406faefb61 Mon Sep 17 00:00:00 2001
From: Erik van Sebille <erikvansebille@gmail.com>
Date: Thu, 2 May 2024 15:36:18 +0200
Subject: [PATCH 3/3] Create linting.yml

---
 .github/workflows/linting.yml | 19 +++++++++++++++++++
 1 file changed, 19 insertions(+)
 create mode 100644 .github/workflows/linting.yml

diff --git a/.github/workflows/linting.yml b/.github/workflows/linting.yml
new file mode 100644
index 0000000..2fefb9d
--- /dev/null
+++ b/.github/workflows/linting.yml
@@ -0,0 +1,19 @@
+name: linting
+on:
+  pull_request:
+  push:
+jobs:
+  linting:
+    name: Linting with flake8
+    runs-on: ubuntu-latest
+    steps:
+      - name: Checkout
+        uses: actions/checkout@master
+      - name: Python setup
+        run: |
+          pip install wheel
+          pip install flake8
+      - name: flake8
+        run: |
+          python -m flake8 plasticparcels
+          python -m flake8 tests