diff --git a/develop/_images/app-dev-tutorial-ps-to-quota-1.png b/develop/_images/app-dev-tutorial-ps-to-quota-1.png deleted file mode 100644 index 3afab57f0..000000000 Binary files a/develop/_images/app-dev-tutorial-ps-to-quota-1.png and /dev/null differ diff --git a/develop/_images/app-dev-tutorial-ps-to-quota-2.png b/develop/_images/app-dev-tutorial-ps-to-quota-2.png deleted file mode 100644 index 18f6d9429..000000000 Binary files a/develop/_images/app-dev-tutorial-ps-to-quota-2.png and /dev/null differ diff --git a/develop/_sources/release-notes/v1.8-release-notes.rst.txt b/develop/_sources/release-notes/v1.8-release-notes.rst.txt index 6cac24fde..773494f93 100644 --- a/develop/_sources/release-notes/v1.8-release-notes.rst.txt +++ b/develop/_sources/release-notes/v1.8-release-notes.rst.txt @@ -268,7 +268,7 @@ Added Sinatra Ruby Gems into ondemand-gems for other apps to use ................................................................ Related Ruby gems for the micro-webframework "Sinatra" were added to the Dashboard Gemfile to ensure they are included in the ``ondemand-gems`` RPM. -Simple applications like the Passenger status app featured in the :ref:`Passenger app development tutorial ` can now be run without needing to install gem dependencies into the application directory. The following gems were added for this purpose: +Simple applications like the Passenger status app featured in the :ref:`Ruby Starter application ` can now be run without needing to install gem dependencies into the application directory. The following gems were added for this purpose: .. code-block:: ruby diff --git a/develop/_sources/tutorials/tutorials-passenger-apps.rst.txt b/develop/_sources/tutorials/tutorials-passenger-apps.rst.txt index 2bb8d1a54..e5c80897d 100644 --- a/develop/_sources/tutorials/tutorials-passenger-apps.rst.txt +++ b/develop/_sources/tutorials/tutorials-passenger-apps.rst.txt @@ -11,6 +11,6 @@ At the bottom of the page is a list of tutorials for developing Passenger apps f :maxdepth: 2 :caption: Tutorials - tutorials-passenger-apps/ps-to-quota + tutorials-passenger-apps/ruby-starter-app tutorials-passenger-apps/nodejs-starter-app tutorials-passenger-apps/python-starter-app \ No newline at end of file diff --git a/develop/_sources/tutorials/tutorials-passenger-apps/nodejs-starter-app.rst.txt b/develop/_sources/tutorials/tutorials-passenger-apps/nodejs-starter-app.rst.txt index f6ea4c409..3f4999883 100644 --- a/develop/_sources/tutorials/tutorials-passenger-apps/nodejs-starter-app.rst.txt +++ b/develop/_sources/tutorials/tutorials-passenger-apps/nodejs-starter-app.rst.txt @@ -91,5 +91,7 @@ There you should see this application at the top of the list. Clicking When the new tab opens you should see a blank page with the text ``Hello World``. This is your new `NodeJs`_ application! +.. include:: deploy-to-production.inc + .. _NodeJs: https://nodejs.org/en .. _Express: https://expressjs.com/ diff --git a/develop/_sources/tutorials/tutorials-passenger-apps/ps-to-quota.rst.txt b/develop/_sources/tutorials/tutorials-passenger-apps/ps-to-quota.rst.txt deleted file mode 100644 index db570cfc4..000000000 --- a/develop/_sources/tutorials/tutorials-passenger-apps/ps-to-quota.rst.txt +++ /dev/null @@ -1,482 +0,0 @@ -.. _app-development-tutorials-passenger-apps-ps-to-quota: - -Creating a Status App -===================== - -Overview of App ---------------- - -We will make a copy of a status app that displays the running Passenger -processes on the OnDemand host. We will use this as a starting point to -create a new status app that displays quota information in a table. - -The app we will be copying is: https://github.com/OSC/ood-example-ps. Running -this app looks like: - -.. figure:: /images/app-dev-tutorial-ps-to-quota-1.png - :align: center - - What app looks like after cloning and launching. - -After this tutorial the resulting app will be: - -.. figure:: /images/app-dev-tutorial-ps-to-quota-2.png - :align: center - - What app looks like after modifying in this tutorial. - -This assumes you have followed the directions to :ref:`enabling-development-mode` on the -Dashboard. - -#. The app uses the custom branded Bootstrap 3 that Job Composer and Active Jobs apps - use. -#. The navbar contains a link back to the dashboard. -#. On a request, the app runs a shell command, parses the output, and displays - the result in a table. -#. It is built in Ruby using the `Sinatra framework `__, a lightweight web framework - similar to `Python's Flask `__ and `Node.js's Express `__ - - -Benefits -........ - -This serves as a good starting point for any status app to build for OnDemand, -because - -#. the app has the branding matching other OnDemand apps -#. all status apps will do something similar on a request to the app: - - #. get raw data from a shell command or http request - #. parse the raw data into an intermediate object representation - #. use that intermediate object representation to display the data formatted - as a table or graph - -#. the app can be deployed without requiring a build step because gem - dependencies (specified in ``Gemfile`` and ``Gemfile.lock``) are pure ruby and - match those that are provided by the ondemand-gems rpm -#. most of the app can be modified without requiring a restart due to proper use - of Sinatra reloader extension -#. app has a built in scaffold for unit testing using minitest - - -OnDemand System Gems -.................... - -This app is able to run in OnDemand 1.8+ without installing the gems specified in the ``Gemfile``. - -All pre-installed Ruby gems used by OnDemand are available to make it easier to develop simple apps. -These include gems used by this example app: - -- ``sinatra`` -- ``sinatra-contrib`` -- ``erubi`` - -On the OnDemand web host, you can execute the command ``source scl_source enable ondemand`` and then ``gem list`` to -see all available gems. These gems are provided by a separate ``ondemand-gems`` rpm that is installed when -you do ``yum install ondemand``. The name of the RPM includes the OnDemand release version, such -as ``ondemand-gems-1.7.12-1.7.12-1.el7.x86_64.rpm``. This ensures that if you do ``yum update`` this gem will -not be removed - so apps can depend on the presence of these gems. - - - -Files and Their Purpose -....................... - -.. list-table:: Main files - :header-rows: 1 - - * - File - - Description - * - ``config.ru`` - - entry point of the Passenger Ruby app - * - ``app.rb`` - - Sinatra app config and routes; this in a separate file from ``config.ru`` so - that code reloading will work - * - ``command.rb`` - - class that defines an AppProcess struct, executes ``ps``, and parses the - output of the ps command producing an array of structs - * - ``test/test_command.rb`` - - a unit test of the parsing code - * - ``views/index.html`` - - the main section of the html page template using an implementation of `ERB `__ - called `erubi `__ - which auto-escapes output of ERB tags by default (for security) - * - ``views/layout.html`` - - the rendered HTML from ``views/index.html`` is inserted into this layout, - where css and javascript files are included - -.. list-table:: Other files - :header-rows: 1 - - * - File - - Description - * - ``Gemfile``, ``Gemfile.lock`` - - defines gem dependencies for the app (see `Bundler's Rationale `__) - * - ``tmp/`` - - tmp directory is kept so its easier to ``touch tmp/restart.txt`` when you - want to force Passenger to restart an app - * - ``public/`` - - serve up static assets like Bootstrap css; in OnDemand, NGINX auto-serves - all files under public/ directly, without going through the Passenger - process, which makes this much faster; as a result, each static file is - in a directory with an explicit version number, so if these files ever - change we change the version, which is one cache busting strategy - * - ``Rakefile`` - - this provides a default ``rake`` task for running the automated tests under - ``test/``, so you can run the tests by running the command ``rake`` - * - ``test/minitest_helper.rb`` - - contains setup code common between all tests - * - ``vendor/bundle`` - - This directory is added if you execute ``bin/bundle install --path vendor/bundle`` to store app specific gems. This is necessary if you want to add gems or specify specific gem versions used by the app that deviate from those provided by system gemset, or if you are using OnDemand 1.7 or earlier. - -Clone and Setup ---------------- - -#. Login to Open OnDemand, click "Develop" dropdown menu and click the "My Sandbox Apps (Development)" option. -#. Click "New App" and "Clone Existing App". -#. Fill out the form: - - #. Directory name: ``quota`` - #. Git remote: ``https://github.com/OSC/ood-example-ps`` - #. Check *"Create new Git Project from this?"* - #. Click **Submit** - -#. Launch the app by clicking the large blue **Launch** button. In a new browser - window/tab you will see the output of a ``ps`` command filtered using ``grep``. - -#. Switch browser tab/windows back to the dashboard Details view of the app and - click the **Files** button on the right to open the app's directory in the File - Explorer. - - -Edit to Run and Parse Quota ---------------------------- - -The app runs and parses this command: - -.. code-block:: sh - - ps aux | grep '[A]pp' - -We will change it to run and parse this command: - -.. code-block:: sh - - quota -spw - -Update ``test/test_command.rb`` -............................... - -Run the command to get example data. Copy and paste the output into the test, and -update the assertions to expect an array of "quotas" instead of "processes" -with appropriate attributes. - -Diff: - -.. code-block:: diff - - def test_command_output_parsing - output = <<-EOF - - - -efranz 30328 0.1 0.1 462148 28128 ? Sl 20:28 0:00 Passenger RackApp: /users/PZS0562/efranz/ondemand/dev/quota - - - +Disk quotas for user efranz (uid 10851): - + Filesystem blocks quota limit grace files quota limit grace - +10.11.200.32:/PZS0562/ 99616M 500G 500G 0 933k 1000k 1000k 0 - EOF - - processes = Command.new.parse(output) - + quotas = Command.new.parse(output) - - - assert_equal 1, processes.count - + assert_equal 1, quotas.count, "number of structs parsed should equal 1" - - - p = processes.first - + q = quotas.first - - - assert_equal "efranz", p.user - - assert_equal "462148", p.vsz - - assert_equal "28128", p.rss - - assert_equal "0:00", p.time - - assert_equal "Passenger RackApp: /users/PZS0562/efranz/ondemand/dev/quota", p.command - + assert_equal "10.11.200.32:/PZS0562/", q.filesystem, "expected filesystem value not correct" - + assert_equal "99616M", q.blocks, "expected blocks value not correct" - + assert_equal "500G", q.blocks_limit, "expected blocks_limit value not correct" - + assert_equal "933k", q.files, "expected files value not correct" - + assert_equal "0", q.files_grace, "expected files_grace value not correct" - end - - -Resulting test method: - -.. code-block:: ruby - - class TestCommand < Minitest::Test - - def test_command_output_parsing - output = <<-EOF - Disk quotas for user efranz (uid 10851): - Filesystem blocks quota limit grace files quota limit grace - 10.11.200.32:/PZS0562/ 99616M 500G 500G 0 933k 1000k 1000k 0 - EOF - quotas = Command.new.parse(output) - - assert_equal 1, quotas.count, "number of structs parsed should equal 1" - - q = quotas.first - - assert_equal "10.11.200.32:/PZS0562/", q.filesystem, "expected filesystem value not correct" - assert_equal "99616M", q.blocks, "expected blocks value not correct" - assert_equal "500G", q.blocks_limit, "expected blocks_limit value not correct" - assert_equal "933k", q.files, "expected files value not correct" - assert_equal "0", q.files_grace, "expected files_grace value not correct" - end - end - -Update ``command.rb`` -..................... - -Run the test by running the ``rake`` command and you will see it fail: - -.. code-block:: sh - - $ rake - Run options: --seed 58990 - - # Running: - - F - - Finished in 0.000943s, 1060.4569 runs/s, 1060.4569 assertions/s. - - 1) Failure: - TestCommand#test_command_output_parsing [/users/PZS0562/efranz/ondemand/dev/quota/test/test_command.rb:14]: - number of structs parsed should equal 1. - Expected: 1 - Actual: 3 - - 1 runs, 1 assertions, 1 failures, 0 errors, 0 skips - rake aborted! - Command failed with status (1) - - Tasks: TOP => default => test - (See full trace by running task with --trace) - -.. warning:: - - To run commands like ``rake`` through the shell you need to make sure you are on - a host that has the correct version of Ruby installed. For OnDemand that likely - means using Software Collections with the same packages used to install OnDemand. - - With SCL, running ``rake`` with ondemand SCL package looks like: - - ``scl enable ondemand -- rake`` - - You can avoid this by loading the SCL packages in your ``.bashrc`` or ``.bash_profile`` file. - For example, in my ``.bash_profile`` I have: - - .. code-block:: sh - - if [[ ${HOSTNAME%%.*} == webtest04* ]] - then - scl enable ondemand -- bash - fi - - This means when I login to the host ``webtest04.osc.edu`` the SCL packages will be enabled - in a new bash session. If you did the same you would replace ``webtest04`` with the hostname - of the node you are developing on. - -To get the unit test to pass we need to: - -#. Change the command we are using. - -#. Fix the command output parsing. - -#. Fix the struct definition. - -.. code-block:: diff - - class Command - def to_s - - "ps aux | grep '[A]pp'" - + "quota -spw" - end - - - AppProcess = Struct.new(:user, :pid, :pct_cpu, :pct_mem, :vsz, :rss, :tty, :stat, :start, :time, :command) - + Quota = Struct.new(:filesystem, :blocks, :blocks_quota, :blocks_limit, :blocks_grace, :files, :files_quota, :files_limit, :fil - - # Parse a string output from the `ps aux` command and return an array of - # AppProcess objects, one per process - def parse(output) - lines = output.strip.split("\n") - - lines.map do |line| - - AppProcess.new(*(line.split(" ", 11))) - + lines.drop(2).map do |line| - + Quota.new(*(line.split)) - end - end - -After the changes part of the ``command.rb`` will look like this: - -.. code-block:: ruby - - class Command - def to_s - "quota -spw" - end - - Quota = Struct.new(:filesystem, :blocks, :blocks_quota, :blocks_limit, :blocks_grace, :files, :files_quota, :files_limit, :files_grace) - - # Parse a string output from the `ps aux` command and return an array of - # AppProcess objects, one per process - def parse(output) - lines = output.strip.split("\n") - lines.drop(2).map do |line| - Quota.new(*(line.split)) - end - end - -Now when we run the test they pass: - -.. code-block:: sh - - $ rake - Run options: --seed 60317 - - # Running: - - . - - Finished in 0.000966s, 1035.1494 runs/s, 6210.8963 assertions/s. - - 1 runs, 6 assertions, 0 failures, 0 errors, 0 skips - -Update ``app.rb`` and ``view/index.html`` -......................................... - -Update ``app.rb``: - -.. code-block:: diff - - helpers do - def title - - "Passenger App Processes" - + "Quota" - end - end - - # Define a route at the root '/' of the app. - get '/' do - @command = Command.new - - @processes, @error = @command.exec - + @quotas, @error = @command.exec - - # Render the view - erb :index - end - - -In ``views/index.erb``, replace the table with this: - -.. code-block:: erb - - - - - - - - - - - - - - <% @quotas.each do |quota| %> - - - - - - - - - - - - <% end %> -
FilesystemBlocksBlocks QuotaBlocks LimitBlocks GraceFilesFiles QuotaFiles LimitFiles Grace
<%= quota.filesystem %><%= quota.blocks %><%= quota.blocks_quota %><%= quota.blocks_limit %><%= quota.blocks_grace %><%= quota.files %><%= quota.files_quota %><%= quota.files_limit %><%= quota.files_grace %>
- -These changes *should not require an app restart.* Go to the launched app and **reload the page** -to see the changes. - -Brand App ---------- - -The app is looking good, but the details page still shows the app title "Passenger App -Processes". To change this and the icon, edit the ``manifest.yml``: - -.. code-block:: diff - - -name: Passenger App Processes - -description: Display your running Passenger app processes in a table - +name: Quota - +description: Display quotas - +icon: fa://hdd-o - -* The icon follows format of ``fa://{FONTAWESOMENAME}`` where you replace ``{FONTAWESOMENAME}`` with an icon from https://fontawesome.com/icons/. - In this case we are using ``fa-hdd-o`` which we write in the manifest as ``fa://hdd-o``. - You can see details on this icon at https://fontawesome.com/icons/hdd?style=regular - -Publish App ------------ - -Publishing an app requires two steps: - -#. Updating the ``manifest.yml`` to specify the category and optionally subcategory, which indicates where in the dashboard menu the app appears. - -#. Having an administrator checkout a copy of the production version to a directory under ``/var/www/ood/apps/sys``. - - -Steps: - -#. Add category to manifest so the app appears in the Files menu: - - .. code-block:: diff - - name: Quota - description: Display quotas - icon: fa://hdd-o - +category: Files - +subcategory: Utilities - -#. Version these changes. Click **Shell** button on app details view, and then ``commit`` the changes: - - .. code-block:: sh - - git add . - git commit -m "update manifest for production" - - # if there is an external remote associated with this, push to that - git push origin master - -#. As the admin, ``sudo copy`` or ``git clone`` this repo to production - - .. code-block:: sh - - # as sudo on OnDemand host: - cd /var/www/ood/apps/sys - git clone /users/PZS0562/efranz/ondemand/dev/quota - - -#. **Reload** the dashboard. - -.. figure:: /images/app-dev-tutorial-ps-to-quota-published.png - :align: center - - Every user can now launch the Quota from the Files menu. - -.. warning:: - - Accessing this new app for the first time will cause your NGINX server to restart, - killing all websocket connections, which means resetting your active web-based OnDemand Shell sessions. - diff --git a/develop/_sources/tutorials/tutorials-passenger-apps/python-starter-app.rst.txt b/develop/_sources/tutorials/tutorials-passenger-apps/python-starter-app.rst.txt index 909fa5e48..4e318f9e8 100644 --- a/develop/_sources/tutorials/tutorials-passenger-apps/python-starter-app.rst.txt +++ b/develop/_sources/tutorials/tutorials-passenger-apps/python-starter-app.rst.txt @@ -138,5 +138,7 @@ virtual environment. Now, with the python wrapper script to load the environment for your application, it should boot up correctly. +.. include:: deploy-to-production.inc + .. _Python: https://www.python.org/ .. _Flask: https://flask.palletsprojects.com/en/3.0.x/ diff --git a/develop/_sources/tutorials/tutorials-passenger-apps/ruby-starter-app.rst.txt b/develop/_sources/tutorials/tutorials-passenger-apps/ruby-starter-app.rst.txt new file mode 100644 index 000000000..da095f3f7 --- /dev/null +++ b/develop/_sources/tutorials/tutorials-passenger-apps/ruby-starter-app.rst.txt @@ -0,0 +1,87 @@ +.. _app-development-tutorials-passenger-apps-starter-ruby-app: + +Starter Ruby Application +======================== + +This document walks through creating a hello world application in Ruby +with the `Sinatra`_ web framework. + +config.ru for Sinatra +--------------------- + +The first thing we need for OnDemand to recognize this directory is a ``config.ru`` file. +For `Sinatra`_ this is the ``config.ru`` that you need. + +.. code:: ruby + + # frozen_string_literal: true + + require_relative 'app' + run App + +config.ru for Ruby on Rails +--------------------------- + +This document does not cover `Ruby on Rails`_, but +this ``config.ru`` is given nonetheless for readers interested +in building Ruby apps based on `Ruby on Rails`_. + +.. code:: ruby + + # frozen_string_literal: true + + require_relative 'config/environment' + + run Rails.application + Rails.application.load_server + +Install dependencies +-------------------- + +The application won't boot with just the ``config.ru``, though it will try. +What you need now is to install the gems (the ruby dependencies). + +We need a ``Gemfile`` to tell ``bundler`` (Ruby's application for dependencies) +what gems to install. Here's that file. + +.. code:: ruby + + # frozen_string_literal: true + + source 'https://rubygems.org' + + gem 'sinatra' + +With the ``Gemfile`` written, we can now install the dependencies +into ``vendor/bundle``. Issue these commands to do that. + +.. code:: shell + + bundle config path --local vendor/bundle + bundle install + + +Write the app.rb file +--------------------- + +Still, the app will not boot at this point. The ``config.ru`` is looking +to load the ``app.rb`` file which does not exist yet. + +The ``app.rb`` file that will actually import `Sinatra`_ and implement your routes. +Here's the simplest version of this file returning Hello World on the root URL. + +.. code:: ruby + + require 'sinatra/base' + + class App < Sinatra::Base + get '/' do + 'Hello World' + end + end + + +.. include:: deploy-to-production.inc + +.. _Sinatra: https://sinatrarb.com/ +.. _Ruby on Rails: https://rubyonrails.org/ \ No newline at end of file diff --git a/develop/index.html b/develop/index.html index 73517be41..2ce077f6c 100644 --- a/develop/index.html +++ b/develop/index.html @@ -357,7 +357,7 @@

Special ThanksTutorials: Passenger Apps diff --git a/develop/objects.inv b/develop/objects.inv index 576d69a6f..39ff47eaa 100644 Binary files a/develop/objects.inv and b/develop/objects.inv differ diff --git a/develop/reference/commands/nginx-stage/commands/app.html b/develop/reference/commands/nginx-stage/commands/app.html index 3c0f2b06c..5b1fb1a9b 100644 --- a/develop/reference/commands/nginx-stage/commands/app.html +++ b/develop/reference/commands/nginx-stage/commands/app.html @@ -285,11 +285,11 @@

Examples

Default Installation

-

Table 10 details the mapping between the requested URL path +

Table 8 details the mapping between the requested URL path to the app root directory for in the NGINX app config under a default installation.

- +diff --git a/develop/release-notes/v1.0-release-notes.html b/develop/release-notes/v1.0-release-notes.html index 2b10b1df3..535edf56f 100644 --- a/develop/release-notes/v1.0-release-notes.html +++ b/develop/release-notes/v1.0-release-notes.html @@ -252,7 +252,7 @@

Components

Infrastructure

Table 10 Mapping of apps for a default installationTable 8 Mapping of apps for a default installation
- + @@ -273,13 +273,13 @@

InfrastructureTable 21 lists the versions of each component that +

Table 19 lists the versions of each component that make up the infrastructure for this release.

Applications

Table 21 Infrastructure Component VersionsTable 19 Infrastructure Component Versions

Component

Version

- + @@ -309,7 +309,7 @@

ApplicationsTable 22 lists the versions of each app for this release.

+

Table 20 lists the versions of each app for this release.

All of the above apps are installed and maintained by version 1.0.0 of the ood-apps-installer utility.

diff --git a/develop/release-notes/v1.1-release-notes.html b/develop/release-notes/v1.1-release-notes.html index f39df8df9..3cea26ba1 100644 --- a/develop/release-notes/v1.1-release-notes.html +++ b/develop/release-notes/v1.1-release-notes.html @@ -248,7 +248,7 @@

Components

Infrastructure

Table 22 Application VersionsTable 20 Application Versions

App

Version

- + @@ -269,13 +269,13 @@

InfrastructureTable 19 lists the versions of each component that +

Table 17 lists the versions of each component that make up the infrastructure for this release.

Applications

Table 19 Infrastructure Component VersionsTable 17 Infrastructure Component Versions

Component

Version

- + @@ -305,7 +305,7 @@

ApplicationsTable 20 lists the versions of each app for this release.

+

Table 18 lists the versions of each app for this release.

All of the above apps are installed and maintained by version 1.1.0 of the ood-apps-installer utility.

diff --git a/develop/release-notes/v1.2-release-notes.html b/develop/release-notes/v1.2-release-notes.html index 8fb5f97ce..6e9c62bec 100644 --- a/develop/release-notes/v1.2-release-notes.html +++ b/develop/release-notes/v1.2-release-notes.html @@ -259,7 +259,7 @@

Upgrading from v1.1

Infrastructure

Table 20 Application VersionsTable 18 Application Versions

App

Version

- + @@ -281,14 +281,14 @@

InfrastructureTable 17 lists the versions as well as the +

Table 15 lists the versions as well as the previous version it was updated from for each component that make up the infrastructure for this release.

Applications

Table 17 Infrastructure Component VersionsTable 15 Infrastructure Component Versions

Component

Version

- + @@ -324,7 +324,7 @@

ApplicationsTable 18 lists the versions as well as the previous version +

Table 16 lists the versions as well as the previous version it was updated from for each of the system web applications in this release.

All of the above apps are installed and maintained by version 1.2.0 of the ood-apps-installer utility.

diff --git a/develop/release-notes/v1.3-release-notes.html b/develop/release-notes/v1.3-release-notes.html index 48dcd73aa..c353c82e3 100644 --- a/develop/release-notes/v1.3-release-notes.html +++ b/develop/release-notes/v1.3-release-notes.html @@ -387,7 +387,7 @@

Upgrading from v1.2

Infrastructure Version Changes

Table 18 Application VersionsTable 16 Application Versions

App

Version

- + @@ -411,14 +411,14 @@

Infrastructure Version ChangesTable 15 lists the versions as well as the +

Table 13 lists the versions as well as the previous version it was updated from for each component that make up the infrastructure for this release.

Application Version Changes

Table 15 Infrastructure Component VersionsTable 13 Infrastructure Component Versions

Component

Version

- + @@ -455,7 +455,7 @@

Application Version ChangesTable 16 lists the versions as well as the previous version +

Table 14 lists the versions as well as the previous version it was updated from for each of the system web applications in this release.

diff --git a/develop/release-notes/v1.4-release-notes.html b/develop/release-notes/v1.4-release-notes.html index 782722779..e5d529df1 100644 --- a/develop/release-notes/v1.4-release-notes.html +++ b/develop/release-notes/v1.4-release-notes.html @@ -319,7 +319,7 @@

Infrastructure Version Changes

Application Version Changes

Table 16 Application VersionsTable 14 Application Versions

App

Version

- + @@ -355,7 +355,7 @@

Application Version ChangesTable 14 lists the versions as well as the previous version +

Table 12 lists the versions as well as the previous version it was updated from for each of the system web applications in this release.

diff --git a/develop/release-notes/v1.5-release-notes.html b/develop/release-notes/v1.5-release-notes.html index ce34325f3..42ec38edc 100644 --- a/develop/release-notes/v1.5-release-notes.html +++ b/develop/release-notes/v1.5-release-notes.html @@ -377,7 +377,7 @@

Infrastructure Version Changes

Application Version Changes

Table 14 Application VersionsTable 12 Application Versions

App

Version

- + @@ -410,7 +410,7 @@

Application Version ChangesTable 13 lists the versions as well as the previous version +

Table 11 lists the versions as well as the previous version it was updated from for each of the system web applications in this release.

diff --git a/develop/release-notes/v1.6-release-notes.html b/develop/release-notes/v1.6-release-notes.html index 9acf5293e..f6f5afdc5 100644 --- a/develop/release-notes/v1.6-release-notes.html +++ b/develop/release-notes/v1.6-release-notes.html @@ -283,7 +283,7 @@

Infrastructure Changes

Application Version Changes

Table 13 Application VersionsTable 11 Application Versions

App

Version

- + @@ -320,7 +320,7 @@

Application Version ChangesTable 12 lists the app version changes between OnDemand v1.5.3 and OnDemand 1.6.7

+

Table 10 lists the app version changes between OnDemand v1.5.3 and OnDemand 1.6.7

Details

diff --git a/develop/release-notes/v1.7-release-notes.html b/develop/release-notes/v1.7-release-notes.html index e4cab31aa..0a7fe3d70 100644 --- a/develop/release-notes/v1.7-release-notes.html +++ b/develop/release-notes/v1.7-release-notes.html @@ -351,7 +351,7 @@

Support running OnDemand with SELinux

Update project dependencies

Table 12 Application VersionsTable 10 Application Versions

App

Version

- +diff --git a/develop/release-notes/v1.8-release-notes.html b/develop/release-notes/v1.8-release-notes.html index b92a5d84b..575de689d 100644 --- a/develop/release-notes/v1.8-release-notes.html +++ b/develop/release-notes/v1.8-release-notes.html @@ -458,7 +458,7 @@

Drop IE 11 support

Added Sinatra Ruby Gems into ondemand-gems for other apps to use

Related Ruby gems for the micro-webframework “Sinatra” were added to the Dashboard Gemfile to ensure they are included in the ondemand-gems RPM. -Simple applications like the Passenger status app featured in the Passenger app development tutorial can now be run without needing to install gem dependencies into the application directory. The following gems were added for this purpose:

+Simple applications like the Passenger status app featured in the Ruby Starter application can now be run without needing to install gem dependencies into the application directory. The following gems were added for this purpose:

gem "sinatra", require: false
 gem "sinatra-contrib", require: false
 gem "erubi", require: false
diff --git a/develop/searchindex.js b/develop/searchindex.js
index f9c18b144..3773f2935 100644
--- a/develop/searchindex.js
+++ b/develop/searchindex.js
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option"]},objtypes:{"0":"http:get","1":"std:cmdoption"},terms:{"0000ff":[20,84],"000943s":141,"000966s":141,"007fff":84,"00am":20,"00pm":20,"1000k":141,"1000m":20,"10mb":20,"1240x900":89,"150mb":105,"150px":84,"162m":100,"172m":100,"17m":100,"181m":100,"1920x1080":89,"1_all":102,"20g":20,"20gb":105,"20s":50,"24h":4,"24t10":69,"256m":100,"28800s":63,"2f58606":12,"2faccess":7,"2fbatch":[119,127],"2fbatchconnect":[119,127],"2fcilogon":12,"2fidp":[7,11,13],"2flogout":[11,13],"2fondemand":[8,11,19],"2fprofil":[11,13],"2fservera":12,"2ftemplat":[119,127],"2fuser":12,"2fwww":19,"2jhfyh7":20,"2mb":20,"2u5":97,"31m":100,"3rd":56,"40cilogon":12,"40core":137,"40harvard":12,"40osc":12,"41fa":8,"48core":137,"4gi":136,"500g":141,"500mi":136,"50gb":105,"53565a":83,"592m":100,"5b4d93636e0968be920cf409252292d674cc951d":60,"5mb":20,"5tb":125,"63m":100,"64g":63,"64gb":[63,105],"65kb":20,"688x":64,"68m":100,"6mb":20,"716de4ac":84,"73s0qfxc5e_s":63,"87f7":8,"88a4":8,"933k":141,"99616m":141,"99m":100,"9f1fe759":84,"boolean":[4,35,36,37,58,62,84,85,88,100,102,103],"break":[10,12,60,83,88,99,100,132,143],"byte":[20,83],"case":[10,12,14,19,20,23,24,27,34,35,39,43,44,45,55,57,62,63,83,85,100,101,119,127,136,137,141],"class":[17,20,30,35,45,85,88,102,103,141],"const":140,"default":[4,11,12,14,15,16,17,18,19,21,23,25,28,29,34,35,36,37,39,43,44,45,47,49,50,51,53,54,56,57,58,60,61,62,63,65,66,67,76,82,83,84,85,87,88,89,90,91,96,98,99,100,102,104,106,109,113,114,119,127,136,141],"export":[2,20,33,39,40,43,44,46,59,60,63,66,67,85,88,126,132,134],"final":[10,17,18,35,43,69,95,132],"float":35,"function":[0,1,12,20,39,44,56,70,85,87,91,97,98,102,105,109,126,132,136,140,143],"import":[2,17,23,27,29,40,47,49,60,62,84,90,99,136,137,140,142],"long":[35,44,96,99,138],"new":[4,5,10,13,14,19,20,23,27,29,30,36,37,42,44,45,50,53,57,62,83,84,92,93,94,95,97,98,109,116,118,119,122,123,127,131,133,136,137,140,141,142,143],"null":[4,5,11,19,24,35,59,60,62,63,83,84,85,87,99,136,137,142],"public":[4,16,20,55,57,58,84,91,141],"return":[2,7,11,12,13,20,24,35,39,43,44,56,60,66,72,74,75,80,119,127,140,141,142],"short":[68,100,105],"static":[1,4,20,44,100,111,112,141],"switch":[100,101,111,126,141],"throw":[99,111,128],"true":[4,7,8,18,20,24,30,34,35,36,37,43,45,56,60,62,63,67,83,84,85,88,125,136],"try":[6,47,49,55,56,60,61,85,87,100,101,102,103,104,109,117],"var":[4,12,18,20,23,24,29,30,42,49,58,60,63,66,69,72,79,80,83,85,90,91,94,95,96,97,98,100,101,102,116,117,118,122,123,131,132,133,137,141],"while":[5,20,34,47,52,84,100,101,106,109,117,138,140],Added:[18,98,104],Adding:[20,28,31,46,51,53,85],And:[24,27,33,39,105,110],Being:62,But:[24,34,35,43,44,109,119,127],CAS:[1,53],DNS:63,For:[2,4,5,10,14,16,18,20,22,23,24,27,29,30,35,36,41,43,44,45,49,50,52,54,55,56,60,62,63,65,69,84,85,88,96,97,98,99,100,102,103,107,113,114,116,119,122,127,131,137,138,140,141,143],Has:100,IDE:[63,109],IPs:85,K8s:[62,136,137],NFS:58,NOT:[20,25,41,44,45,120,129,135],Not:[20,35,83,88],OSes:104,One:[20,49,62,103,106,136,137],PBS:[21,51,54,70,88,100,115,121],QoS:35,TLS:4,That:[22,24,35,40,42,54,100,132],The:[0,1,2,4,7,8,10,11,12,13,16,17,19,20,21,22,23,24,25,26,28,30,32,33,34,35,36,37,39,41,42,43,44,45,47,49,50,51,52,53,54,55,56,57,58,60,61,62,64,65,66,67,69,70,72,75,76,79,80,81,82,83,84,85,86,87,88,89,90,93,94,95,96,97,98,99,100,101,102,103,104,105,107,109,110,111,113,114,115,116,117,118,119,120,121,122,123,125,126,127,128,129,130,131,132,133,135,136,141,142,143],Then:[13,17,18,19,20,30,35,40,110,116,122,131,132],There:[6,20,23,24,29,42,44,45,49,61,62,63,84,85,100,102,103,119,125,127,128,132,140,142],These:[5,9,14,17,20,29,35,37,43,44,45,46,49,51,54,62,63,84,85,86,87,88,89,91,96,102,103,106,107,116,119,122,127,131,137,141],Tos:51,Use:[8,13,17,20,24,43,47,62,63,82,83,84,85,88,90,105,109,111,112,121,125,138],Used:[4,56,85,91,99],Useful:[85,117],Uses:35,Using:[11,14,60,63,67,85,98],VMs:105,WILL:44,Will:56,With:[20,27,34,42,60,63,109,141],__main__:[60,142],__name__:[60,142],_access:49,_any_:20,_blank:33,_email:20,_erb:20,_err_to_out:60,_error:49,_footer:20,_html:20,_in:60,_limits_:136,_my_cluster_widget:20,_my_new_widget:20,_native_vnc_:45,_requests_:136,_shibsession_:[10,13],_theme:15,_tmux:63,_your_:7,a12ff167dd13:8,aaba6ahbauquag:[20,56],aarch64:105,ab001:39,ab100:39,abaqu:52,abc123:[42,84],abil:[16,20,56,62,63,66,96,98,103],abl:[4,18,19,20,21,24,29,35,42,46,49,53,54,60,62,63,84,85,93,96,99,101,102,109,115,121,130,134,138,140,141,142],abort:[99,141],about:[20,27,30,39,47,48,49,50,51,55,56,66,99,101,113,114,117,119,127,136,137,142],abov:[7,11,13,20,22,23,24,25,27,32,35,39,41,44,50,62,63,67,84,85,89,91,93,94,95,100,102,103,107,109,113,114,119,120,127,129,135,136,142],abruptli:117,absolut:[20,23,45,63,85,90,132],abus:44,academ:124,acceler:[125,129],accept:[0,4,17,20,27,35,58,101],access:[1,4,11,12,14,16,17,18,19,23,30,32,33,43,44,45,51,53,54,56,57,58,62,69,80,83,84,85,93,94,96,97,100,101,102,103,106,112,116,122,131,134,141],accesslog:85,accomid:104,accommod:85,accomplish:[10,56,113,114,132,138],accord:[105,126],accordingli:[7,20,47],account:[16,20,23,24,27,34,35,42,43,57,62,69,84,85,87,88,99,125,136,137],accounting_id:[35,43,88,136,137],acess:20,achiev:63,acknowledg:107,acl:[20,103],across:[20,35,49,84,102,113],act:[19,29,42,58,62],action:[5,20,33,45,58,102,106],activ:[1,18,20,44,50,53,54,62,77,79,84,95,97,99,101,141,142],activejob:[20,29,91,96],actual:[22,23,35,40,42,47,55,57,59,62,63,69,84,102,105,109,119,126,127,134,141],adapt:[20,21,24,39,40,51,56,58,60,61,62,63,64,65,66,67,68,70,93,94,97,119,125,127,137],adaybujeda:103,add:[1,2,4,5,9,14,18,21,23,29,32,34,35,37,39,43,51,52,53,54,56,60,62,63,66,80,84,85,91,93,96,102,103,104,106,108,111,119,127,128,139,141,142],add_line_to_configmap:136,added:[15,16,20,29,34,35,36,43,45,54,83,84,85,87,91,96,97,98,99,100,101,102,103,128,141],adding:[10,15,20,29,55,57,62,84,94,96,97,98,99,102,117,119,125,127,132,142],addit:[4,7,20,28,31,34,37,80,83,84,85,89,90,100,132,136,137,143],addition:[20,31,34,85,106],addr:4,address:[12,18,20,49,62,83,85,88,100],adf:[1,53],adjust:[4,17,20,33,50,63,84],admin:[4,15,16,17,18,19,20,29,49,62,98,108,141],administr:[2,20,35,42,45,47,49,57,67,83,92,100,101,106,141],adopt:[51,143],advanc:[9,23,51,54,56,142],advantag:[23,43,45,96,98,113,114,115,121,130],advers:128,adversli:83,advertis:[29,53],advic:20,aebruno:103,affect:[20,24,58,69,83,91,94,96,102,103,107],after:[1,12,15,18,19,20,22,24,29,31,33,35,53,54,56,57,60,62,63,69,84,87,88,96,98,100,101,102,103,104,105,109,113,114,116,117,118,122,123,131,133,137,138,140,141,143],after_initi:[20,30,103],again:[20,32,56,63,69,117],against:[12,20,23,35,102],agarw:103,agent:85,aggreg:[20,50],agnost:[43,113,114],ago:18,ahead:[96,109,117,125,132],aid:97,aim:108,alert:[20,96],alia:[16,20],alias:[20,85],align:33,aliv:[19,47,104],all:[0,4,5,7,12,18,19,20,22,23,24,27,28,29,31,34,35,39,42,43,44,45,46,49,52,53,54,56,57,58,62,63,67,69,71,73,74,75,77,78,81,83,84,85,86,87,88,89,90,91,93,94,95,96,98,99,100,101,103,104,107,109,113,116,118,119,122,123,127,131,132,133,135,136,137,139,140,141,142,143],all_app:20,all_namespac:62,alllow:104,alloc:[7,63,125],allow:[17,22,23,24,29,34,35,36,42,43,45,48,50,51,53,56,58,62,63,70,83,84,85,97,98,99,100,101,102,103,106,112,113,116,119,125,127,132],allow_embed:20,allow_origin:136,allowlist:[51,56,85,103,106],alma:[50,57],almalinux:[50,53,57,104,105],almost:60,alon:[20,35,132],along:[32,85,100,103],alongsid:[97,143],alpha:100,alphabet:[51,91],alphanumer:[44,83],alreadi:[7,17,18,20,35,40,43,44,45,49,86,101,113,114,126,136,137],also:[1,12,14,15,20,23,24,29,30,32,34,35,36,43,44,45,49,50,51,52,54,57,58,60,62,63,64,77,82,83,85,86,87,96,97,98,101,102,103,105,109,113,117,119,125,127,136,137,143],alter:[56,60,83],altern:[7,20,56,62,67,84,128,130],although:[20,29,43,119,127],altogeth:[20,36,103,106],alwai:[12,20,24,29,32,40,62,69,85,88,96,97,98,100,101,102,104],alwasi:136,amazon:[53,57,105],amd64:[50,62],among:57,amount:[35,42,88],amzn2023:57,an0047:29,analysi:[99,101],analyt:[46,51,84,85],analyticsservic:27,analyticsv3:27,ancestor:[20,85],anchor:[20,39,55],ani:[2,10,17,19,20,22,24,27,32,34,35,39,40,42,44,45,49,59,60,62,67,69,72,73,75,81,82,83,84,85,89,90,96,97,98,100,101,102,103,104,105,107,109,117,119,120,124,125,126,127,129,135,136,137,139,140,141,142],anni:[7,12],annot:62,announc:[51,84,106],announcement_path:84,anonym:[13,17,20],anoth:[29,34,39,43,62,85,88,98,103,105,113,118,123,125,133],another_script:33,ansi:[52,124],ansibl:54,answer:128,anticip:47,any_file_nam:20,anymor:[24,73,102,113,114],anyon:[20,62,83,103,143],anyth:[26,34,35,39,42,63,83,87,88,104,113,124,138],anywher:[20,56,96,103,143],aoaklei:[7,12],apach:[0,1,2,6,8,9,11,12,13,14,20,28,38,46,49,50,51,53,57,58,80,82,83,85,96,98,101,105,106],apache2:[47,57,104],apache_hom:47,api:[4,18,27,31,56,62,87,89,124],apivers:62,app:[16,19,21,22,23,24,25,26,27,33,34,35,37,40,41,43,44,45,46,49,50,51,54,56,58,63,69,73,74,75,80,81,83,84,85,86,87,88,91,92,95,99,104,105,106,108,112,113,114,117,119,120,125,127,129,132,135,142],app_clean:81,app_config_path:83,app_development_en:30,app_directori:[116,122,131],app_init_url:80,app_jupyt:36,app_list:81,app_nam:[20,72],app_own:72,app_passenger_env:83,app_request_regex:83,app_request_uri:83,app_reset:81,app_root:[30,83],app_token:83,appear:[20,24,29,30,35,45,63,80,96,97,98,100,116,122,128,131,132,141],append:[23,24,99,119,127],append_path:132,appl:69,appli:[13,19,20,35,43,58,62,63,84,86,87,89,90,102,136],applic:[0,7,18,28,29,30,31,32,33,34,35,36,37,40,42,43,44,45,48,51,56,59,60,62,66,69,72,73,74,75,83,84,85,86,88,91,92,100,101,102,103,104,105,106,121,126,136,137,138,139],appnam:[29,103,140],appprocess:141,appreci:1,approach:[11,20,29,62,97,129,137],appropri:[5,15,18,19,20,27,35,39,43,44,49,55,63,91,96,120,129,132,135,140,141,142],approv:16,apprun:134,apps_path:137,apptain:90,apt:[2,4,55,57,102,104],aptli:44,arbirari:[36,62],arbitrari:[20,30,63,97],architectur:[51,57,93,99,104,106],archiv:50,area:[17,36,106],aren:44,arg:[20,60,62,88,137],arguement:12,argument:[20,23,43,60,66,69,83,85,88,89,90,98,99,113,114,119,127],argv:60,arithmet:[24,43,44],arizona:51,arm64:105,around:[20,40,49,67,103,116,122,131],arrai:[4,23,24,35,36,43,51,83,84,85,87,88,89,101,106,113,114,119,127,136,141],arrang:20,arrow:101,ascii:99,asid:[119,127],ask:[30,96],aspect:[103,137],assert:[62,141],assert_equ:141,asset:[20,44,83,91,126,141],assign:[20,107],assist:14,assoc:142,associ:[33,56,84,96,141],assum:[2,22,29,30,35,37,43,44,45,55,62,84,96,101,109,112,113,136,137,141],atkin:99,attach:[20,34,59],attack:39,attempt:[4,6,14,20,24,69,76,85,95,99,103,109,135],attribut:[18,20,21,22,23,31,33,34,42,43,44,45,51,63,86,88,96,100,101,103,111,112,115,119,121,127,130,140,141],audit2allow:58,audit:[58,106],aug:29,auth:[1,2,6,8,10,13,16,17,18,19,20,53,62,63,85,98,100,101,105],auth_openidc:[19,85],auth_shib:13,authent:[3,4,5,6,7,8,9,11,12,13,14,16,17,18,20,44,45,49,51,53,57,58,63,85,94,98,100,102,103,106,137],authenticated_usernam:12,authentict:104,authnam:19,author:[2,4,13,16,19,29,55,62],authtyp:[2,8,10,13,19,85],authuserfil:19,auto:[24,103,132,141],auto_account:[35,88,103],auto_group:[35,84,103],auto_groups_filt:84,auto_modul:103,auto_modules_:35,auto_modules_matlab:35,auto_modules_netcdf:35,auto_modules_netcdf_seri:35,auto_modules_r:35,auto_primary_group:[35,103],auto_qo:35,auto_queu:[35,88],auto_supplemental_group:62,autofil:20,autogroup:35,autom:[54,97,141],automat:[9,31,34,62,84,88,110],aux:141,avail:[1,20,23,24,27,29,33,34,35,43,44,45,49,50,51,52,56,60,62,63,69,75,84,88,91,96,99,100,101,103,107,113,119,125,127,129,135,137,140,141,143],averag:105,avoid:[20,30,44,81,85,141],awai:24,awar:[12,20,35,56,124,129],awesom:45,awk:[7,39,62,87,119,127],aws:61,b972c25d:8,back:[6,16,19,24,33,34,39,44,57,58,84,87,96,99,102,103,109,117,141],backend:[10,13,19,45,61,85,106,113,114],background:[20,43,44,84,109,111,125,126],backport:51,backtrac:63,backup:[96,98],backward:[20,102,143],bad:60,bak:96,balanc:[51,106],balance1:20,balance2:20,balzana:100,banner:109,bar:[37,51,84,85,88,100,103,106],bart:100,barton:99,base64:62,base:[5,7,11,13,15,16,18,28,29,30,31,42,47,50,56,62,63,83,84,87,89,98,102,103,104,124,129,134,135,137,139,140,141],base_path:20,base_slurm_arg:137,base_url:[33,45,136],basearch:134,basedn:4,baselin:62,basenam:20,bash:[7,12,20,39,40,43,44,56,60,62,63,66,69,84,86,87,97,102,119,127,136,137,141,142],bash_help:87,bash_profil:[40,141],bash_rematch:12,bash_sourc:142,bashrc:[40,66,110,141],basi:[20,35,101],basic:[6,19,24,33,39,40,43,44,56,66,86,89,90,99,101,103,105,106,113,114,119,137,139],basicconfig:60,batch:[22,23,25,29,31,34,35,37,40,41,44,45,49,51,52,53,56,59,62,63,65,66,69,70,93,95,102,103,106,112,114,115,116,117,119,120,121,122,125,127,129,130,131,132,135],batch_connect:[20,23,33,37,39,40,43,44,45,49,62,63,66,84,86,87,89,90,103,113,114,116,119,122,127,131,137],batchmod:63,baverhei:100,bc_account:[23,24,35,42,88,113,114,117,119,125,127,132],bc_clean_old_dir:84,bc_clean_old_dirs_dai:84,bc_desktop:[20,22,23,24,29,42,96,97],bc_desktop_example_kd:29,bc_dynamic_j:84,bc_email_on_start:[23,24,35,88,113,114,117,119,125,127,132],bc_example_jupyt:[52,116],bc_example_rstudio:[131,132,133,135],bc_js_filepick:[104,124],bc_jupyter_dynpart:52,bc_my_center_matlab:[122,123,124,125,126,127,128],bc_num_hour:[23,24,35,44,88,113,114,117,119,125,127,132,137],bc_num_slot:[23,24,35,113,114,117,119,125,127,132],bc_osc_abaqu:52,bc_osc_ansys_workbench:52,bc_osc_codeserv:52,bc_osc_comsol:52,bc_osc_example_shini:52,bc_osc_jupypt:33,bc_osc_jupyt:52,bc_osc_jupyter_spark:52,bc_osc_matlab:[52,122,126],bc_osc_paraview:52,bc_osc_qgi:52,bc_osc_rstudio_serv:52,bc_osc_stata:52,bc_osc_vmd:52,bc_queue:[23,24,35,43,88,112,113,114,117,119,127,132],bc_relion:52,bc_simple_auto_account:[35,84],bc_vnc_idl:24,bc_vnc_resolut:[24,125],bcff07264b318688c3f4272a9662b13477833373:126,becaus:[7,11,18,20,22,24,29,35,40,43,54,56,61,62,63,66,67,69,84,85,87,88,98,100,101,102,103,111,125,134,136,141,142],becom:[10,20,97,99,102],been:[2,14,16,20,35,40,43,56,63,64,69,76,96,97,98,99,100,102,104,107,126,128,129,137,138,143],befor:[2,10,19,20,21,23,24,29,31,33,35,43,50,57,59,62,67,83,85,87,90,96,97,98,99,100,101,102,103,104,109,110,115,116,117,120,121,122,129,131,135,136,137,138],before_fil:87,before_script:87,beforehand:85,begin:[2,5,12,20,24,27,109,110,116,117,122,125,131,132,137],behalf:29,behav:[20,51,62,66,103,111,136],behavior:[4,32,34,60,63,84,91,97,98,99,103],behaviour:[20,67,84],behe:4,behind:[1,18,20,85],being:[4,10,13,19,20,35,40,42,46,49,56,60,61,85,87,88,96,98,99,100,102,103,105,109,128,137,143],believ:129,belong:[63,98],below:[0,1,5,16,18,19,20,24,29,30,31,35,36,43,44,45,47,56,62,63,66,67,83,84,85,87,89,90,93,94,96,97,99,101,102,103,111,113,119,126,127,137,142],ben:101,beneath:72,benefici:49,benefit:[29,42,96,98,132,137],best:[24,39,43,47,54,69,96,97,101,102,105],beta:100,better:[20,29,35,85,99,104],between:[4,18,20,29,35,49,55,62,63,72,84,85,97,98,99,100,101,103,111,132,141],beyond:103,bgohar:30,big:[47,103,137],biggest:96,bin:[4,7,8,12,18,20,29,39,40,43,44,50,56,59,60,61,62,63,64,65,66,67,69,70,82,83,84,86,87,89,90,102,103,104,109,110,128,132,136,137,141,142],bin_overrid:[51,54,61,64,65,66,67,70],binari:[4,53,54,61,66,67,70,83],bind:[5,17,18,23,63,90,134],binddn:4,bindir:64,bindpw:4,bio:20,biologi:[20,37,102,103],bit:20,bjob:64,bkill:64,black:20,blank:[17,20,23,24,43,119,125,127,140,142],blender:29,blob:[53,57,60],block:[18,44,51,103,106,126,137,138,141],block_limit:20,block_usag:20,blocklist:[56,103],blocks_grac:141,blocks_limit:141,blocks_quota:141,blue:[0,35,84,141],bmcmichael:30,bob:[12,13,29,72,76,79,80],bodi:[20,40,83],body_bytes_s:83,bolster:106,book:20,bookworm_al:57,bool:84,boostrap:[43,62],boot:[43,89,90,139],bootstrap:[20,43,45,90,96,102,134,141],border:141,border_color:20,botani:37,both:[12,14,18,19,20,34,35,42,43,53,56,62,63,85,86,88,91,97,98,101,102,132,136,137],bottom:[17,20,87,97,139],bound:[62,134],bowdoin:51,box:[0,16,20,34,35,50,83,101,102,106,116,122,131],branch:[109,110,143],brand:[51,101,102,103,106,139],brand_bg_color:[20,84],brand_link_active_bg_color:[20,84],bresum:64,breviti:[27,63,66,90],bridg:7,brief:[20,60],brittl:35,broader:86,broke:97,broken:[9,29],broker:16,brows:[55,84,103],browseabl:97,browser:[0,5,16,20,21,22,23,24,26,33,35,39,45,47,51,55,83,84,96,97,101,103,104,109,115,116,118,119,121,122,123,127,130,131,133,141],bstop:64,bsub:[43,56,64,84,100],btn:45,buechler:100,buffalo:[51,101],buffer:101,bug:[94,97,116,122,128,131,143],bugfix:95,build:[4,5,8,10,19,20,35,36,39,44,51,85,109,116,122,126,130,131,137,141],builder:[57,102],built:[0,20,24,43,53,57,63,66,97,102,113,116,122,131,134,137,141,143],builtin:12,bulk:[96,136],bunch:103,bundl:[83,97,98,141],bundle_user_config:83,bundler:[57,109,141],bus:63,bust:141,button:[17,20,35,36,45,84,85,97,102,116,117,122,131,141],bypass:105,c12:[43,119,127],cacert:62,cach:[31,90,103,141],cacheabl:35,cachetempl:18,cachethem:18,cae:52,call:[12,18,20,24,27,29,33,35,43,60,62,76,84,85,87,101,102,113,114,117,140,141],callback:16,campu:7,can:[1,2,4,7,9,10,12,13,15,16,17,18,20,23,24,26,27,28,30,31,32,33,34,35,36,37,39,42,43,44,45,47,49,50,51,54,55,56,58,59,60,62,63,67,68,69,81,82,83,84,85,86,87,88,89,90,91,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,113,114,116,118,119,122,123,124,125,127,131,133,136,137,140,141,142,143],canari:29,cancel:[51,84,106],cancel_session_en:[20,84],candid:143,candidate_favorite_path:[20,103],cannot:[12,20,24,29,39,62,63,87,88,111,125],capabl:[12,34,37,81,82,85,86],capit:84,captur:[8,13,49,85],card:[28,31,33,51,56,84,99,103,104,106],care:[24,29,43,44,56,84,87,98],carri:24,casloginurl:10,cat:[18,49,50,58,62,100,126,128],catalog:29,categori:[29,37,84,97,98,102,103,109,141],caus:[10,20,23,35,43,45,56,63,67,85,87,89,97,105,109,113,119,127,141],caution:[20,24],caveat:67,ccq:61,ccqcert:61,ccqdel:61,ccqstat:61,ccqsub:61,center:[1,3,11,13,15,20,35,43,51,52,72,80,85,96,97,98,99,100,101,102,103,104,106,107,116,122,131,137],cento:[63,69,97,98,100,102,103,132,134],centos7:[63,132,134],centos_7:63,central:[3,100],cert:[2,4,18,55,61,62,85],cert_authority_fil:62,certain:[20,62,63,83,84,96,97],certainli:60,certian:103,certif:[2,4,14,17,18,53,55,57,61,62],cfg:136,cgconfig:63,cgi:[33,85],cgred:63,cgroup:[0,20],cgrule:63,chain:[69,85],chanc:22,chang:[4,8,10,11,18,19,21,23,29,30,31,34,35,36,39,47,51,53,58,60,61,62,69,82,84,85,87,89,91,92,100,101,106,109,110,113,117,118,119,123,125,127,128,132,133,137,141,143],changelog:[93,94,97,98],changem:[20,62],changetarget:33,channel:55,charact:[44,51,56,66,81,83,85,87,99,100,106],charg:[20,23,34,35,43,88,125],charge_account:34,check:[16,20,34,35,36,43,49,50,57,58,63,84,94,96,109,116,119,122,127,131,141],check_box:[34,35,36,104],checkbox:[34,36,88],checked_valu:36,checkout:[109,110,141],checksum:[82,100],cherri:43,chevi:35,chgrp:[19,29],child:[20,42,63],chmod:[4,8,10,18,19,20,29,62,69,142],choic:[34,35,42,43,102,103,137],choos:[5,16,17,20,22,24,32,34,35,36,42,43,52,62,101,102,103,112,113,114,119,127,137,140],chose:[113,114,137],chosen:[34,35,42,63,83,119,127],chown:[4,18,20,49,90],chpc:52,chrome:[98,105],cidr:20,cilogon:[1,7,14,85],circumv:103,claim:[12,19],class_instruct:20,classroom:102,claus:34,clean:[5,44,56,63,73,77,84,87,90,97,98,99,100,101,102,103,104],clean_fil:87,clean_script:87,cleaner:69,cleanup:[31,60,62,87],cli:[18,67,120,129,135],click:[5,16,17,20,22,35,37,42,45,62,84,85,96,101,103,107,109,113,114,116,117,119,122,127,131,140,141,142],clickabl:99,client:[0,1,4,12,14,16,19,20,21,27,47,53,54,56,60,61,62,64,65,66,67,70,83,89,101,124,126],client_bodi:80,client_id:[4,7,62],client_nam:4,client_redirect_uri:4,client_secret:[4,62],clipboard:[101,102],clock:[20,126],clone:[4,5,29,109,110,116,122,131,135,136,137,139],close:[12,102,103],closer:[35,143],closest:102,cloud:[61,62],cloudcmd:102,cloudi:[51,54,101],cloudyclust:61,cluster1:[23,35,39,69,119,127],cluster2:[35,69],cluster:[20,21,23,24,26,31,32,34,38,39,42,43,44,51,52,60,64,65,66,67,69,70,84,86,98,99,103,104,111,114,116,117,119,122,125,127,131,132],cluster_id:[32,44],cluster_overrid:20,cluster_us:56,clusteradmin:62,cmd:[4,58,85],cmd_user:62,cmdline:50,code:[8,20,21,23,27,28,30,31,34,40,42,43,45,52,53,56,57,60,80,82,83,84,85,87,91,97,98,99,103,107,109,110,113,119,126,127,141,143],codebas:20,coderais:102,codereadi:[57,102],codeserv:49,cog:20,cold:136,collabor:[29,51],collect:[2,18,30,50,57,83,91,96,97,98,105,141],colleg:51,colon:[20,97],color:[20,84,89,96,102,109],column:[20,99,102],com:[2,4,5,8,19,20,39,50,52,53,57,60,62,85,100,101,102,104,109,110,116,122,125,126,128,131,141],combin:[18,47,85],come:[12,24,43,45,57,60,63,68,103,109,143],comfort:[47,57],comm:50,comma:[36,63,85,90,99],command:[9,18,23,29,39,43,47,49,51,53,55,56,61,62,63,64,65,66,67,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,87,88,89,90,95,100,101,102,106,117,119,127,128,136,137,138,140,142],comment:[7,18,20,52,84,100,106],commit:[106,117,119,127,141,143],common:[1,12,15,20,24,34,43,44,83,103,104,113,125,138,141],commonli:[35,132],commun:[4,20,45,52,55,61,63,85,139,143],compar:[20,102],compat:[20,56,97,102,103,137,143],complain:[20,66],complaint:99,complet:[20,24,27,31,44,46,66,69,87,88,89,94,96,98,99,100,105,108],complex:[102,112],compon:[0,20,35,46,92,97,98,99,107],compos:[29,49,51,54,56,60,91,95,97,98,101,106,108,141],composit:126,compositor:126,comprehens:99,compris:[20,86],comput:[0,20,21,25,26,28,38,39,41,45,49,51,56,62,63,68,90,101,103,105,106,111,115,119,120,121,127,129,130,134,135,138],compute_clust:137,comsol:[45,52],con:42,conbin:85,concat:20,concern:107,conclus:51,concurr:143,conda:136,condition:43,conduct:106,conf:[2,10,13,18,19,47,50,56,63,64,66,67,80,82,83,85,90,96,98,99,137],confer:97,confidenti:17,config:[2,4,5,8,10,11,13,14,16,17,18,22,23,24,29,30,34,35,39,40,42,43,45,51,54,55,57,61,62,63,64,65,66,67,69,70,72,73,74,75,80,82,83,84,85,86,91,95,97,98,101,102,109,113,117,119,125,126,127,132,136,141],config_fil:62,config_properti:20,config_valu:20,configmap:[62,111],configmap_data:136,configmap_filenam:136,configur:[1,3,7,8,9,13,14,15,18,22,23,24,28,30,31,34,38,39,42,44,45,46,47,49,51,53,55,56,57,60,61,64,65,66,67,70,72,73,74,75,80,82,86,87,91,95,97,98,100,104,105,106,108,117,119,125,127,132,136,137,142,143],configvers:126,confirm:[21,39,85,95,107,115,118,121,123,128,133],conflict:[40,44],confnew:102,confus:[0,24,94,109],conn_fil:[87,89],conn_param:[28,31,87,89,102,137],connect:[1,7,11,12,16,17,18,19,21,28,31,34,37,39,40,44,46,47,49,50,51,52,53,54,56,59,62,63,66,77,79,93,98,99,102,103,105,106,115,116,121,122,125,130,131,141],connector:[4,12,85],consequ:[20,24,83,97,102],consid:[20,29,63,100,101,143],consider:[51,56],consist:[20,35,43,45,83],consol:140,consolid:20,constitut:96,constraint:137,construct:[20,44,45],consumpt:[50,63],contact:[14,17,20,96,107],contain:[18,20,23,28,30,33,43,44,51,52,56,62,66,83,85,86,87,97,98,99,111,117,132,134,141,143],container:63,container_bindpath:90,container_command:90,container_modul:90,container_path:90,container_start_arg:90,content:[5,19,20,35,43,56,60,62,85,87,88,97,103,117,136,140,142],context:[20,31,33,35,49,51,58,62,87,102,121,126],contian:90,continu:[21,34,63,85,97,98,101,103,107,115,116,117,121,122,128,131],contract:12,contrib:[101,141],contribut:[1,52,100,101,103,105,107],contributor:[100,107],control:[20,23,35,43,45,47,56,61,62,63,64,65,66,67,70,76,84,85,96,97,101,103,113,119,127],conveni:138,convent:[20,28,62,96,139],convers:[20,44],convert:[2,20,24,35,43,44],convieni:12,cooki:[10,13,18,19,97],cool:[37,85],coordin:107,coorespond:62,copi:[4,5,17,20,29,44,52,55,67,83,85,88,95,96,98,102,105,111,115,118,121,123,125,126,130,133,141],copy_environ:[67,88],cor:20,core:[20,28,34,35,36,42,43,47,88,96,100,105,107,125,137],corner:[5,16,17,109],correct:[1,18,19,20,24,29,63,69,91,109,110,119,126,127,141],correctli:[12,20,27,35,48,49,103,142],correspond:[12,22,23,24,35,40,43,45,47,53,58,69,70,72,75,80,83,84,85,95,101,113,117,119,125,127,132],could:[1,10,20,29,30,35,39,55,59,62,63,87,97,99,102,109,132,136,143],count:141,counter:97,countri:35,coupl:20,cours:30,cover:[20,99,132,137],covert8:103,cpu:[20,23,35,47,56,63,101,105,119,124,127,136,137],cpu_limit:136,cpu_request:136,cpuaccount:63,cpuquota:63,crash:[20,49,99,126],crb:57,creat:[0,2,17,18,22,23,27,28,29,30,32,35,43,44,45,47,49,51,54,56,62,69,80,83,84,94,95,96,97,98,101,103,108,113,114,115,116,121,122,126,128,130,131,132,136,137,139,140,143],create_passwd:44,create_salt_and_sha1:136,created_at:32,creation:[62,84],cred:62,credentail:62,credenti:[16,17,19,27,57,62],criteria:[20,100],critic:[99,106,107,124],crond:63,cronjob:20,crontab:62,crop:22,crt:[4,18,55,62],crucial:107,csc:103,csrf:20,css:[84,102,141],cuda:34,cuda_vers:34,cuda_visible_devic:59,cumul:20,curl:50,current:[1,15,17,20,25,29,31,34,35,44,51,52,53,56,57,62,63,67,69,75,82,83,84,85,87,93,94,96,102,105,106,109,116,117,122,131,134,143],currentus:20,custim:20,custom:[1,2,10,12,14,16,21,22,24,28,31,33,34,43,47,51,58,60,63,83,84,85,91,94,95,96,97,99,100,101,106,109,111,115,121,130,141],custom_app:96,custom_config:113,custom_css_fil:[20,84],custom_env:97,custom_javascript_fil:[84,104],custom_location_direct:85,custom_map:12,custom_nam:97,custom_pag:[20,84],custom_pages_guid:20,custom_queu:[113,114],custom_variable_on:33,custom_variable_two:33,custom_vhost_direct:85,customapp:29,customlog:18,cwd:[60,99],cyberinfrastructur:7,cybersecur:107,cycl:143,d3d3d3:126,daemon:[18,44,50,126],daemons_use_tti:58,dai:[27,51,84,106,107],daili:20,dalli:102,dan:99,danger:[20,96],dark:[20,84],dasbhoard:62,dashboard:[11,16,19,22,24,26,28,30,35,37,44,45,46,49,51,54,56,60,62,69,72,83,84,85,87,91,95,98,103,104,106,110,113,116,118,122,123,131,133,141],dashboard_header_img_logo:[20,84],dashboard_layout:[20,84],dashboard_logo:[20,84],dashboard_logo_height:[20,84],dashboard_titl:[20,84],data:[12,18,20,27,33,34,35,44,46,60,62,84,87,94,98,99,101,102,103,104,106,136,141],databas:[14,63,67],dataroot:104,date:[20,55,61,87,102],date_field:35,davidmonro:103,dbu:63,deb:[57,102,104,143],debian:[47,53,55,57,105],debug:[9,20,22,43,45,47,49,51,57,63,88,94,95,117,126,136,137],debuggin:49,decid:24,declar:[83,97],decleari:83,decod:[12,60],decreas:[47,85,102],dedic:[26,28],def:[60,86,87,141,142],defens:5,defin:[4,17,18,20,23,24,27,31,33,42,43,44,54,59,62,63,69,82,83,84,85,88,91,97,101,113,114,117,119,125,127,132,134,137,141],definit:[20,24,43,63,84,86,100,141],degrad:47,degre:143,delet:[5,10,20,47,53,62,63,73,84,98,99,102],delimit:[20,63,97,99],deliveri:20,delivery_method:20,delivery_set:20,delm:7,demo:85,demonstr:[17,20,60],deni:[20,83],denial:58,denot:[72,75],depart:20,depend:[5,20,23,29,35,45,47,49,50,51,52,53,55,96,97,98,101,113,114,119,127,132,134,135,140,141,142],deploi:[8,11,13,29,31,35,43,44,45,52,73,74,75,83,91,94,97,98,111,115,121,130,141],deploy:[2,5,20,29,46,53,55,62,83,85,96,106,118,123,133],deprec:[20,83,102,129,143],depth:89,deriv:97,describ:[20,23,27,31,34,35,37,39,43,44,54,56,62,66,83,85,116,119,122,127,128,131,136,137,140,142],descript:[18,20,24,35,37,52,141],design:63,desir:[16,20,49,84,102,113,135],desk1:20,desk:20,desktop:[20,22,23,25,29,41,51,56,63,89,94,95,97,98,99,102,103,105,111,121,126,129],despit:[20,97],destin:20,destination_path:[136,137],detail:[0,1,2,7,9,11,12,27,35,44,45,54,56,58,59,62,72,79,82,83,84,85,92,93,94,106,107,116,117,119,122,127,131,136,137,138,141],detect:[63,99],determin:[4,35,43,44,56,62,83,85,87,89,107,119,127,136,137],dev:[5,14,17,19,20,29,30,35,43,44,45,59,60,62,63,72,80,83,90,95,108,113,114,116,117,118,119,122,123,124,125,126,127,128,131,132,133,135,136,137,140,141,142],dev_work:[109,110],devel:18,develop:[6,18,20,29,31,33,35,45,51,52,57,60,62,63,83,85,94,95,96,98,99,100,101,102,103,104,105,111,112,116,122,126,131,136,137,139,140,141,142,143],devgrp:30,deviat:141,dex:[1,8,9,51,53,58,85,102,104,106],dex_uri:[4,85,103],dexidp:4,diagram:[44,51],dictionari:[20,84],did:[35,43,99,141],didn:[35,62],dies:117,dietz:99,diff:[95,96,97,98,99,141],differ:[3,14,20,23,24,34,35,40,43,47,61,62,64,65,66,67,70,82,83,84,85,96,97,98,100,103,109,110,119,124,125,127],different_select_clust:35,differenti:62,difficult:[53,57,102],digit:51,dimens:[27,35],dimension1:27,dimension3:27,dimension6:27,dir:[4,20,33,84,136],direct:[1,10,11,17,18,19,20,34,40,47,54,55,69,85,93,100,101,107,112,137,141],directli:[2,4,10,12,20,23,24,32,35,36,42,43,45,47,83,91,93,97,100,101,102,103,108,141],directori:[1,15,18,22,23,29,30,31,35,36,37,43,44,45,49,51,53,54,58,61,63,64,66,69,72,80,81,83,84,85,87,88,91,95,98,99,100,101,104,106,108,110,116,117,118,122,123,126,131,132,133,134,136,137,138,140,141],dirnam:[20,142],disabel:20,disabeled_shel:83,disabl:[4,18,19,23,35,36,39,51,56,58,62,83,84,85,106,126,128,135],disable_bc_shel:84,disable_bundle_user_config:83,disable_check_xsrf:136,disable_dashboard_logo:84,disable_log:85,disable_safari_basic_auth_warn:101,disabled_shel:83,disablerepo:98,disclos:103,disclosur:106,discourag:[6,67],discours:[3,14,17,20,51,52,58,97,98,107],discov:[20,85,132],discoveri:85,discuss:[9,12,20,24,35,119,127],discussus:12,disk:[51,58,60,83,97,106,116,122,131,141],dispar:7,displai:[11,16,20,24,31,32,36,43,44,45,55,56,59,62,73,76,77,79,81,82,83,84,85,89,95,97,98,99,100,101,102,104,125,126,128,138,141],disregard:100,disrupt:100,distant:61,distinct:[43,63,103],distinguish:109,distribut:[12,18,20,63],div:[20,102],dnf:[4,50,57,90,102,103,104],doc:[2,4,15,18,20,55,88,100,128],docker:[0,5,62,90,136,137],dockerfil:[53,57],documen:98,document:[4,7,8,12,13,15,17,20,23,27,30,43,45,47,51,55,56,62,69,71,84,85,88,94,96,99,101,102,106,107,112,113,114,136,137,140,142,143],dodeploi:5,doe:[1,10,20,23,27,29,30,34,35,38,44,45,55,56,58,60,61,63,84,97,99,104,109,116,122,125,126,128,129,131,134,136],doesn:[18,20,30,34,45,69,80,83,87,97,102,113,114],doing:[12,18,59,63,83,96,136],domain:[0,20,39,79,83,84,85,88,139],don:[14,18,19,20,23,24,27,34,35,39,52,53,57,73,82,83,84,85,93,94,100,109,136],donat:97,done:[20,22,23,29,40,44,58,60,62,66,87,96,101,102,109,114,118,119,123,124,126,127,133,136,138,142],dot:[0,12,63,89],doubl:83,down:[9,16,20,49,62,96,109,110,112,113,114],downgrad:98,download:[2,7,18,50,51,84,103,106,130],download_en:84,downtim:20,dpi:89,dpkg:102,dport:[4,58],drastic:69,draw:0,drawer:105,drink:126,driven:[35,143],drmaa:66,drop:[16,20,112,113,114,141],dropdown:[5,16,20,22,30,35,84,96,97,98,99,100,101,102,109,116,118,122,123,131,133,141],drwx:80,drwxr:[29,80],dsun:128,due:[97,100,101,141],duo:[1,53],duo_java:5,duosecur:5,duoweb:5,duplic:20,durat:[62,89],dure:[18,20,63,82,85,87,89,96,97],dynam:[20,23,27,28,31,32,35,37,69,84,85,95,96,102,124],each:[0,12,15,20,22,24,27,29,31,35,42,43,45,54,62,63,67,83,84,93,94,95,96,97,98,102,104,105,109,113,116,122,125,131,137,141],each_pair:137,eager:99,earli:[44,51,143],earlier:[96,120,141],easi:102,easier:[15,16,95,141],easiest:[20,35],easili:[20,96],echo:[7,12,44,59,62,69,87,126],ecmascript:105,edg:[20,99,105],edit:[2,5,10,13,17,18,19,20,23,24,27,29,53,62,69,83,84,97,100,103,111,113,117,121,125,128,132,138,139],editor:[20,27,29,93,94,95,96,97,98,99,102,109,117,125,132],edt:[12,18],edu:[4,11,12,13,14,16,17,18,19,20,29,30,39,40,43,45,52,53,54,55,56,57,61,62,63,64,65,66,67,69,70,72,80,84,85,88,90,96,97,98,99,100,101,102,103,104,113,116,118,122,123,131,133,137,141],edu_access_ssl:18,edu_error_ssl:18,educ:51,effect:[10,19,20,29,30,39,53,96,97,102,107,109,113],effici:[20,101],efranz:[29,30,141],eight:20,either:[4,14,20,23,34,35,49,56,62,63,66,85,86,97,98,100,102,103,113,114],el6:[97,98],el7:[2,96,97,98,100,103,104,105,141],el8:[2,57,90,103,104],el8serv:90,el9:[57,87,104],elaps:[20,99],element:[20,31,35,66,102,112,113,114,117,125,132],elev:63,elisa:99,ellips:18,els:[7,12,19,29,43,47,62,103,126,137],elsewher:20,elsif:137,email:[7,8,12,16,17,20,23,29,35,58,83,85,88,107,125],email_field:[20,35],email_on_start:[35,43,88],email_on_termin:88,emailattr:4,emb:[18,20,23,43,45,99,113,119,127],embed:[20,23,32,43,44,45,97,113,119,127],emphas:106,emploi:[62,102],empti:[10,12,24,27,35,62,84,85,87,88,99,124],emul:63,en_u:90,enabl:[2,4,10,11,16,17,18,19,20,23,28,34,35,38,44,45,51,53,58,62,63,64,66,69,83,84,85,93,95,98,100,101,102,103,104,108,109,121,129,137,141],enable_cuda_vers:34,enable_gpu:34,enable_native_vnc:45,enable_starttls_auto:20,encod:[12,81],encount:[20,49,55,66],encourag:106,encrypt:[55,97,106],end:[0,12,14,18,20,27,30,39,43,44,63,69,84,87,96,99,102,103,109,113,126,137,138,141,143],end_dat:27,endpoint:[16,62,84,104],endpoint_path:84,enforc:[20,85],engag:107,engin:[51,54,62,97,100],english:20,enhanc:[106,107],enough:[12,26,102,128],ensur:[2,5,10,20,29,33,40,43,49,50,55,60,62,63,66,67,69,98,100,101,103,106,107,109,110,132,134,138,141,142],enter:[20,61,109,116,122,131],entir:[31,35,43,86,125,142],entiti:7,entitl:100,entri:[12,20,24,35,49,62,63,85,101,104,141],entrypoint:[140,142],enumer:35,env:[4,16,20,29,30,35,45,60,62,83,84,85,88,91,96,97,100,101,102,108,136,137,140,142],envdir:64,enviorn:67,enviro:84,environ:[7,8,19,20,24,25,29,30,33,35,40,44,45,50,51,56,60,62,67,69,71,80,81,83,84,85,87,88,89,90,96,99,100,101,102,103,105,106,109,120,126,129,132,134,135,136,137,139,140],environment:99,envvar:47,eof:[18,50,62,141],eot:126,epel:[57,90,97,98,102],equal:[20,141],equip:108,equival:[24,35,119,127],equvial:20,erb:[18,20,22,23,24,28,31,33,45,51,62,71,82,83,84,87,88,89,96,99,101,103,113,114,117,119,124,125,126,127,128,132,136,137,138,141],eric:29,error:[12,39,48,49,51,55,60,61,66,69,80,83,85,87,88,89,95,100,106,111,117,121,141],error_path:[63,88],errorlog:[18,85],errorreturncod:60,erubi:[23,32,43,44,45,101,113,119,127,141],esac:62,escal:[22,49],escap:[19,33,81,141],escel:20,especi:55,ess:[36,137],essenti:[62,84,106,109],est:[12,20],etc:[2,4,7,8,10,11,12,13,16,18,19,20,22,23,24,26,29,30,35,39,40,42,43,45,47,49,50,54,55,56,58,61,62,63,64,65,66,67,69,70,82,83,84,85,86,88,90,91,95,97,98,99,100,101,102,103,113,117,119,125,127,132,136,137],evalu:99,even:[20,29,30,34,63,82,102,106,136,138,143],event:[20,47,102],eventu:20,ever:[48,141],everi:[0,12,18,20,29,34,35,37,61,62,69,84,85,89,101,104,141,143],everyon:[28,29],everyth:[0,29,34,35,42],everytim:113,exact:20,exactli:35,exampl:[3,4,7,8,10,11,13,14,16,18,19,20,23,24,27,30,31,34,36,40,42,44,47,49,50,51,54,55,58,59,62,63,69,81,82,83,84,85,87,88,89,90,91,93,96,97,99,100,101,102,103,109,113,114,116,119,122,126,127,129,131,134,135,136,137,138,140,141,142,143],example_clust:40,example_templ:20,excel:107,except:[20,60,88,96,99,104,128,132],exception:99,exclud:[29,100],exclus:137,exec:[20,63,65,87,134,141,142],execstart:18,execut:[5,12,20,28,31,44,56,60,62,63,65,72,76,77,80,82,87,98,113,134,137,141,142],execv:[49,69,117],exempt:97,exercis:[53,57],exhaust:105,exisit:84,exist:[16,20,42,44,69,73,80,84,85,87,91,96,97,101,102,113,114,116,122,124,131,138,141],exit:[12,44,60,62,82,99,126],exit_cod:60,exitcod:82,expand:[20,96],expect:[20,35,45,53,62,63,83,88,90,97,98,113,114,141],experi:[29,58,105,128,138],experienc:44,experiment:[20,69],expir:[4,61,62],expiri:[4,61],explain:[19,20,119,127],explan:[97,98],explicit:141,explicitli:[20,30,35,56,85,101,102,132],explor:[20,63,117,124,141],expos:[4,19],expr:[10,13],express:[9,10,13,20,35,39,61,83,85,102,113,140,141],exst:[28,31],extend:[15,20,103],extens:[18,20,23,43,44,45,51,54,56,100,119,127,141],extern:[4,16,29,51,96,128,141],extra:[20,35,37,88,89,96,102,142],extra_arg:89,extra_jupyter_arg:[113,114,117,119,127],extract:[27,61,62,101],eye:45,facil:[20,59],facilit:[20,63],facl:[29,84,103],facl_domain:84,fact:[27,42,44,62],factor:[1,53,62,98,100,105],fail:[12,22,39,48,49,63,69,85,100,101,119,127,141],failur:[20,46,49,60,141],fairli:20,fakeroot:90,fallback:[23,85],fals:[4,18,20,34,35,36,37,56,62,63,67,69,83,84,85,99,100,101,102,103,128],falsi:20,far:[58,101],fas:20,fashion:27,fast:20,fastcgi_temp:80,faster:[12,56,96,102,141],fastest:12,favicon:[15,20,84,85,91],favor:[85,104],favorit:[20,36,117,125,132],favoritepath:[20,103],featur:[8,20,27,34,35,36,43,44,45,54,56,62,66,69,84,85,90,92,93,97,98,99,100,101,102,109,119,127,143],feaur:20,februari:20,fed:43,feder:[1,7,16,17,53],fedorapeopl:2,fedoraproject:97,feed:20,feedback:51,feel:[20,43,53,57,84,85,96,102],fetch:87,fetur:20,few:[20,24,29,44,60,63,85,103,109,112],ff0000:20,fff:83,field:[16,17,20,21,23,34,35,36,43,45,62,84,88,97,98,99,102,113,114,124],field_of_sci:[20,37,102],fig:44,fil:141,file:[2,4,5,7,8,9,10,13,14,15,18,19,22,23,24,26,27,28,30,31,32,33,35,36,39,40,42,43,45,49,50,51,52,53,54,56,57,58,60,61,62,63,64,65,66,67,69,70,71,72,73,74,75,79,80,81,82,83,85,86,87,88,89,91,94,95,96,97,98,106,108,113,114,116,117,119,122,124,125,126,127,128,129,131,132,134,136,137,139,140],file_attach:20,file_limit:20,file_upload_max:[20,101],file_usag:20,filebrows:84,fileexplor:99,filenam:[20,60,85,102,136],files_enable_shell_button:[84,102],files_grac:141,files_limit:141,files_quota:141,filesystem:[20,58,84,98,132,137,141],fill:[5,16,24,35,42,43,44,62,103,113,114,116,117,122,131,141],filter:[4,20,27,35,60,84,96,102,141],filter_argv:60,filter_script:60,find:[6,20,24,29,30,44,63,69,99,101,102,104,107,113,114,126,142],find_host_port:136,find_port:44,fine:[20,85,98,142],finish:[69,88,111,141],finland:103,firefox:[98,99,105],firewal:[1,53],firewalld:[4,58],first:[4,12,13,14,16,20,23,24,27,29,35,40,43,44,48,55,62,63,85,87,95,96,97,98,99,100,101,102,103,104,108,109,113,114,116,119,122,125,127,131,136,137,140,141,142,143],firstgpu:59,fit:[20,62],five:31,fix:[51,63,69,92,94,96,101,102,106,107,116,122,128,131,141,143],fixm:53,flag:[36,37,50,67,84,88,96,99,100,101,128],flask:[139,141],flexibilti:56,flexibl:[35,96,136],flow:[5,16,23,43,45,51,97,103,113,119,127],fluxbox:[121,129,138],fluxbox_assets_root:126,fluxbox_rc_fil:126,flybirdkh:101,focal_al:[57,104],focu:[1,125],folder:[20,32,100,128],folk:103,follow:[0,1,2,4,7,8,9,10,12,13,19,20,23,24,25,28,29,31,33,35,39,40,41,43,44,45,50,52,55,58,61,62,63,64,65,66,67,70,83,85,96,100,101,102,103,104,105,109,112,113,114,116,118,120,122,123,128,129,131,132,133,134,135,137,139,141],font:[45,89],fontawesom:141,fontawesomenam:141,foo:[85,88],footer:[20,87,99],footnot:[93,94],forbidden:97,forc:[4,20,77,82,100,101,102,103,104,109,126,141],ford:[35,113,114],forego:39,foreground:20,foreign:70,forget:40,fork:[43,44,81,102,136,137],form:[5,16,21,22,23,28,31,33,42,43,44,45,51,84,88,96,97,101,102,104,111,112,116,117,119,121,122,125,127,131,132,141],form_id:33,format:[2,12,19,20,22,24,27,39,60,61,83,84,85,97,99,119,127,141],former:42,formerlei:7,formerli:51,formerlli:101,forward:[18,20,57,96],found:[7,12,20,35,43,44,45,83,91,97,98,99,101,107,136,137],foundat:7,four:[0,20],fqdn:[4,39,62],fragil:60,frame:[5,20,49,85,143],framework:[103,106,139,141,142],frankli:56,free:[34,43,53,55,57,85,96,124],freeli:143,french:20,fresh:[20,83],friend:126,friendli:20,from:[0,1,2,7,8,10,12,13,14,16,17,18,19,20,22,24,26,27,29,32,33,35,36,39,42,43,44,46,47,48,49,51,54,56,60,61,62,63,65,67,69,72,82,83,84,85,88,90,92,103,104,105,107,108,109,110,112,113,114,116,118,119,122,123,125,127,131,132,133,134,135,137,138,141,142,143],front:[0,14,20,85],frontend:[4,20,85,97],frozen:[97,98],fsgroup:62,ftl:5,ftp:20,full:[12,18,20,35,45,56,66,83,84,85,90,95,99,104,111,125,129,141],full_path:20,full_url:33,fullchain:55,fulli:29,fullscreen:126,fund:26,further:[20,31,60,83,102,103,106,119,127],futur:[10,17,63,69,83,95,96,97,99,101],ga_profil:27,ganglia:105,gap:20,gatewai:[29,30,72,83,116,134],gather:[20,35],gcloud:62,gcp:61,geco:4,gem:[88,99,109,119,127],gemfil:[101,109,141],gemset:141,gener:[0,1,2,4,8,10,11,12,13,14,18,22,32,33,34,35,37,39,43,44,45,49,50,51,53,58,61,62,69,71,81,83,84,87,88,94,95,96,97,98,99,102,103,104,113,114,117,119,125,127,132,136,143],generat:96,geometri:89,georg:51,georgiastuart:103,get:[4,7,15,17,20,24,27,29,32,35,39,42,44,45,47,51,55,56,57,60,62,63,66,85,94,99,102,104,109,116,117,121,122,131,137,138,140,141,142],get_ga_data:27,getelementbyid:102,getgrgid:56,getinputargu:128,getlogin:84,getpass:60,getpwnam:[84,136,137],getruntimemxbean:128,getus:60,gib:[20,101],gid:[62,136,137],gist:[18,84],git19:[97,98],git29:100,git:[4,5,29,42,96,109,110,116,117,119,122,127,131,141],github:[4,5,20,29,45,50,52,53,57,60,65,69,97,100,101,102,103,104,107,109,110,116,122,126,129,131,141,143],githubusercont:62,gitlab:52,give:[20,30,34,35,39,43,49,62,85,97,102,103,142],given:[0,7,12,20,22,23,24,27,29,35,42,43,44,45,54,62,64,76,79,80,82,83,84,85,87,88,89,97,105,117,119,125,127,132,143],glnxa64:128,glob:[20,35],global:[20,23,24,31,35,40,45,56,95,101,104,111,112,119,127],globu:84,globus_endpoint:84,glossari:51,gmail:20,gnome:[21,25],goal:[63,116,122,131],goe:[48,63,142],going:[63,96,102,103,104,109,116,122,131,136,137,140,141],good:[1,18,39,44,85,96,109,141],googl:[46,51,62,84,85,105],google_analytics_tag_id:[27,84],googleapi:62,goolg:62,gopath:4,got:[63,69],gpu:[34,43,59,125,126,129,137],gpus_per_nod:137,grab:44,grace:141,gracefulli:[98,100],grafana:[46,51,56,106],grai:0,grant:17,granular:[20,29,103],graph:[20,100,141],gre:[59,97],great:[55,99,109],greater:[29,35],greatli:1,green:[35,55],grei:[20,109],grep:[7,20,62,141],grid:[7,12,20,51,54,85,97,100,102],gridengin:66,group:[4,8,18,20,29,30,35,37,49,56,60,61,62,63,69,84,85,102,103,136],groupadd:[4,18],groupattr:4,groupinstal:90,groupsearch:4,grpc:4,guarente:91,guest:[132,134],gui:[43,44,52,93,138],guid:[2,20,21,28,38,67,106,115,121,128,130],guidelin:107,guilherm:100,guimaluf:100,had:[43,77,94,99,100,104,105],hand:[20,32,35,84,100,102,142],handi:63,handl:[11,14,19,20,23,24,44,45,47,56,60,85,96,98,100,119,127],handler:[85,107],hang:60,happen:[30,49,55,105],happi:[118,119,123,127,133],harbor:62,hard:[21,31,42,103,136],hardcod:125,hardwar:[51,124,125],harvard:[12,103],has:[2,7,11,12,14,16,18,20,23,24,26,29,30,32,34,35,37,42,43,44,45,46,47,56,57,58,62,63,64,69,84,85,87,88,96,97,98,99,100,101,104,105,107,113,114,124,125,126,128,129,136,137,138,139,140,141,142,143],hash:[4,20,24,35,43,83,84,85,88,120],have:[1,3,7,8,10,14,18,20,21,22,23,24,27,29,30,34,35,39,40,42,43,44,45,46,47,49,51,52,53,54,55,56,57,59,61,62,63,67,69,76,77,80,81,83,84,85,87,88,89,93,94,97,98,99,100,101,102,104,105,107,109,110,112,113,114,115,116,117,119,121,122,123,126,127,129,131,133,134,136,137,140,141,142,143],haven:[40,63,96],hdd:141,head:[20,59,60,63],header:[10,18,19,20,43,84,85,86,87],heart:113,heartbeat:89,heavili:62,height:[20,84],held:[20,84,142],hello:[140,142],helm:62,help:[12,16,21,22,29,33,35,36,44,45,46,47,51,58,59,64,81,82,84,85,94,99,100,101,106,107,109,113,114,125,128,132,134],help_bar:[20,84],help_menu:[20,84],helper:[30,141],her:0,here:[1,7,12,15,17,20,24,27,30,33,34,35,37,42,43,45,49,52,54,56,57,62,63,66,84,86,87,88,91,100,101,102,103,104,106,107,108,109,113,119,126,127,134,136,137,142],heterogen:34,hex:[18,19,63],heymann:99,hidden:[20,34,36,45,56,63,96,101],hidden_field:[20,35,36],hide:[30,31,35,51,84,99,102,104,106,116,122,124,131],hide_app_vers:[84,103],hide_when_empti:20,hierarchi:[20,91,96,132],high:[0,39,51,103,106],higher:[20,35,85],highest:87,highli:[6,22,44],highlight:[20,51,93,94,95,96,97,98,99,100,101,102,119,126,127],hint:18,his:29,hit:[27,44],hoffman2:97,hold:[23,43,44,84,85,88,96,136,137,142],home:[16,18,23,29,30,35,36,43,44,45,49,51,58,60,61,63,69,83,84,88,94,95,96,104,106,116,122,126,131,132,136,137],home_dir:136,homedir:116,homepag:84,hook:[31,85],hookenv:62,hooksdir:62,host:[1,4,14,27,28,39,40,43,44,45,47,50,51,53,54,56,58,60,61,62,64,65,66,67,70,82,83,85,87,89,90,96,98,99,102,104,106,113,118,119,123,127,132,133,134,136,137,141],host_based_profil:[20,84],host_cfg:136,host_port_cfg:136,host_regex:[39,85],host_typ:[136,137],hostnam:[2,18,20,27,39,44,45,47,49,84,85,87,119,127,141],hostport:136,hour:[19,20,23,24,35,43,62,87,88,107,125],hous:[56,84],hover:[17,37],how:[0,2,7,12,20,23,24,27,29,35,39,40,42,43,45,46,47,50,51,54,56,60,62,83,84,85,86,88,96,97,98,100,101,102,103,104,109,113,114,116,119,122,127,131,132,136,137,140,142],howev:[18,20,23,35,42,63,96,100,101],hpc:[0,3,14,16,17,18,19,20,21,29,51,52,54,56,61,62,63,64,65,66,67,70,93,101,111,136],hpctoolset:20,href:45,htcacheclean:[100,101],hterm:105,html:[2,15,18,19,20,31,33,35,36,45,55,84,85,87,95,98,101,102,112,113,114,117,125,128,132],html_option:34,htpasswd:19,http:[1,2,4,5,7,8,10,11,12,13,14,15,16,17,18,19,20,29,39,43,44,45,50,52,53,55,56,57,58,60,62,63,72,80,82,85,86,90,96,97,98,99,100,101,102,103,104,106,116,118,119,122,123,125,126,127,128,131,133,134,141],http_port:4,http_refer:83,http_user_ag:83,http_x_forwarded_escaped_uri:80,http_x_forwarded_for:83,httpd24:[2,10,18,19,82,96,98,100,101,102,103,104],httpd:[2,10,12,13,18,19,46,49,50,51,53,57,82,96,98,100,101,102,103,104],httpd_can_network_connect:58,httpd_enable_homedir:100,httpd_execmem:100,httpd_mod_auth_pam:58,httpd_read_user_cont:100,httpd_run_stickshift:58,httpd_setrlimit:58,httpd_unifi:100,https_port:4,hub:134,huge:125,hugemem:[125,137],human:20,hybrid:52,hyperthread:137,hyphen:[34,35],hypothet:45,i18n:20,iam:27,ico:[15,20,84],icon:[20,37,42,44,45,84,141],iconbar:126,id_:102,idattr:4,idea:[20,60,109,113,114],ideal:20,ident:[5,7,8,14,20],identifi:83,idl:[18,47,83,89],idletimeout:89,idp:[2,7,8,11,13,18,20,62],idp_issuer_url:62,idpdev:[14,16,17,18,19],idphint:7,idpmetadata:2,ids:35,idtoken:4,ifmodul:47,ifnotpres:137,ifram:20,ignor:[39,56,63,69,83,101],ihpc:45,illeg:[51,66,106],illustr:[0,27,34],imag:[2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_version_path:83,ondemandopen:101,one:[0,7,19,20,30,34,35,42,43,49,54,56,62,63,85,87,88,91,96,97,99,100,101,102,103,108,116,122,131,137,138,140,141,142],ones:[20,77,99,125],onfailur:[136,137],ongo:107,onli:[0,1,4,8,12,14,16,18,20,24,25,27,29,32,33,34,35,36,41,42,43,44,45,50,53,54,58,61,62,63,66,70,72,76,77,80,83,84,85,87,89,93,94,96,97,98,100,101,102,103,104,105,110,116,119,120,122,127,129,131,135,140,142,143],onlin:29,onsubmit:33,onto:83,ood:[1,4,8,10,11,12,13,14,15,16,18,22,23,24,26,29,30,35,39,40,42,43,45,49,50,51,53,54,55,56,58,60,61,62,63,64,65,66,67,69,70,71,72,83,84,85,86,87,89,91,94,95,96,97,98,99,102,103,104,106,110,113,116,117,118,119,122,123,125,127,131,132,133,136,141],ood_:[84,85],ood_allowlist_path:[20,103],ood_app_catalog_url:29,ood_app_shar:[29,102],ood_auth_map:[8,12,93,94,95,96],ood_balance_path:20,ood_balance_threshold:20,ood_batch_connect_cache_attr_valu:35,ood_bc_ssh_to_compute_nod:[20,56,100],ood_brand_bg_color:[83,84,109],ood_brand_link_active_bg_color:83,ood_config_d_directori:[84,109],ood_cor:[56,60,88,119,127],ood_dashboard_dev_docs_url:20,ood_dashboard_docs_url:20,ood_dashboard_help_custom_url:[16,20],ood_dashboard_logo:20,ood_dashboard_logo_height:101,ood_dashboard_passwd_url:20,ood_dashboard_support_email:29,ood_dashboard_support_url:20,ood_dashboard_titl:83,ood_default_sshhost:20,ood_dev_ssh_host:30,ood_download_dir_max:20,ood_hide_job_arrai:20,ood_job_name_illegal_char:[20,100],ood_local:[20,101],ood_locales_root:20,ood_max_script_size_kb:[20,100],ood_mod_proxi:85,ood_native_vnc_login_host:45,ood_oidc_access_token:85,ood_port:[2,4,7,8,10,11,13,19,20,39,51,71,82,96,99,100,101,102,103,104],ood_portal_exampl:85,ood_pun_socket_root:[83,98],ood_pun_t:58,ood_quota_path:[20,97],ood_quota_threshold:20,ood_shel:[99,102],ood_shell_origin_check:20,ood_show_job_options_account_field:96,ood_ssh_port:20,ood_ssh_wrapp:20,ood_sshhost_allowlist:20,ood_support:[30,56],ood_upcase_account:35,ood_xdmod_host:20,oodappkit:113,oodcor:[35,113,114,119,127],oodfilesapp:[20,103],oodsupport:[30,136,137],opaque_remote_usernam:12,open:[1,4,6,7,9,10,12,13,14,17,20,22,30,31,34,36,37,38,39,40,42,43,45,46,47,49,52,53,54,57,58,59,60,63,64,67,68,70,71,82,83,84,85,87,95,97,101,103,104,106,107,108,109,116,117,122,125,131,140,141,142,143],open_sess:63,open_timeout:20,openid:[1,7,11,12,16,17,18,19,20,53,62,98],openjdk:[18,129],openldap:[4,17],openondemand:[2,20,47,62,99,107],openssl:[2,18,19,120],oper:[24,43,44,51,57,69,102,104,106,134,143],opt:[5,8,10,12,13,15,18,19,20,23,29,39,56,60,61,62,63,65,69,82,83,85,87,88,89,90,91,95,96,98,99,100,101,102,103,104,128,132,136,137],optim:[20,35,128,137],optimis:52,option:[1,2,4,10,12,22,23,24,28,31,35,36,37,39,40,42,44,45,50,53,55,56,61,62,63,64,65,66,67,70,73,74,78,81,84,98,100,101,102,106,112,113,114,116,119,120,122,124,125,127,128,129,131,135,136,138,141],options_account_help:20,oracl:128,order:[10,13,16,20,24,27,35,45,49,51,52,56,62,63,91,103,128,132,138],oregon:51,org:[2,4,7,12,15,16,18,20,55,62,97,99,107,134],org_nam:20,org_rol:20,organ:[2,20,103],organiz:2,orgid:[20,56],origin:[20,45,60,84,100,102,106,141],orin:96,osc:[4,5,12,14,15,16,17,18,19,20,22,27,30,39,45,50,52,53,54,56,57,59,60,62,63,69,84,90,96,97,98,99,100,101,102,103,104,105,109,110,116,122,124,125,126,129,131,134,137,141,143],osc_test:20,osu:56,osvers:134,other:[1,2,10,12,13,15,17,20,23,24,28,29,31,32,35,42,43,45,49,50,51,53,56,57,59,61,62,63,66,81,83,84,85,87,89,90,95,96,98,99,100,102,103,105,108,109,115,120,121,129,135,136,137,142,143],other_main:87,other_users_of_the_clust:56,otherwis:[4,12,37,40,44,62,63,69,137],otp:15,our:[7,10,17,20,23,24,27,30,39,51,69,85,93,94,96,97,98,103,105,107,109,113,114,116,117,119,122,127,131,136,138],ourselv:[27,138],out:[2,6,7,11,12,13,16,18,19,20,27,34,35,42,43,44,50,56,60,62,63,83,85,101,103,105,106,109,110,113,114,116,122,131,141],outag:[67,100],outcom:18,outlin:[20,45,96,106,107,112],output:[12,44,45,47,48,49,56,60,61,69,84,87,88,97,99,113,117,141],output_cluster1_2018:69,output_path:[63,88],outsid:[0,8,10,13,20,23,62,68,98,100,137,143],over:[17,20,37,55,57,84,85,96,105,106,116,122,131,142],overid:84,overidden:88,overlai:126,overrid:[23,24,35,36,37,39,42,45,51,56,63,70,84,87,88,91,97,106,119,126,127,132],overridden:[24,37,87,89],overried:42,overview:[1,28,49,51,53,71,86,106,139],overwrit:96,overwritten:63,owen:[12,24,29,35,42,44,56,63,99,125,137],owens_login:[24,63],owens_login_desktop:24,own:[12,13,15,20,28,29,31,43,45,47,49,62,63,81,85,97,102,103,104,109,138],owner:[30,83,102,116,122,131],ownership:[18,49],p100:125,p18:137,p20:137,pack:62,packag:[1,5,20,30,53,57,58,98,100,101,102,134,137,140,141,143],page:[1,6,11,15,16,18,19,24,27,29,33,34,35,43,45,46,47,49,51,54,57,59,63,84,85,86,99,100,101,104,106,109,113,114,116,122,131,136,137,139,140,141,142],page_cod:20,pagepath:27,pagin:27,pair:[20,37,84,91,97,113,114],pam:[6,63],pam_exec:63,pam_keyinit:63,pam_limit:63,pam_mkhomedir:[20,97],pam_servic:63,pam_sss:63,pam_succeed_if:63,pam_systemd:63,pam_uid:63,pam_unix:63,pam_us:63,pane:93,panel:[20,31,56,102,126],panelid:20,parallel:43,param:[19,60,64],paramet:[17,20,22,28,31,35,83,87,89,102,103,111,115,117,121],paraview:[52,93],parent:[42,63,97,98],parlanc:[136,137],pars:[12,20,27,44,56,60,69,85,99,139],parse_uri:27,part:[0,7,12,26,27,35,46,52,100,109,128,141],parti:[39,56],partial:[20,93],particip:51,particular:[0,22,23,35,49,102,116,122,131],particularli:[53,57,106],partit:[35,51,83,105,111,113,114,137],pass:[4,10,12,19,20,33,35,60,62,67,69,83,85,87,88,89,90,91,102,125,141],passeng:[28,37,50,51,79,80,83,96,100,101,102,103,104,105,140,141,142],passenger40:[97,98],passenger_:83,passenger_base_uri:140,passenger_log_fil:83,passenger_max_preloader_idle_tim:83,passenger_nodej:83,passenger_opt:83,passenger_pool_idle_tim:83,passenger_python:83,passenger_root:83,passenger_rubi:83,passenger_statu:50,passenger_wsgi:142,passengerag:50,passwd:[44,89,136],passwd_from_secret:136,password:[4,5,18,19,20,31,44,60,61,62,63,69,87,89,120,136],password_field:35,password_fil:44,password_s:87,password_sha1:136,passwordless:63,passwordplacehold:20,past:[20,62,99,105,141],patch:51,path:[4,12,13,18,20,23,29,36,39,40,45,50,56,58,61,62,63,64,65,66,67,69,70,72,73,74,75,80,83,84,85,87,88,89,90,91,97,98,100,102,103,109,132,134,136,137,141],path_selector:[36,104],pathnam:[20,44,84],pattern:[20,35,85,102],paw0003:20,pbs:[23,65,119,127],pbs_default:69,pbspro:[43,51,65,93,98],pcp_dir:91,pct_cpu:141,pct_mem:141,pdf:[95,99],peer:28,pem:[55,85],peopl:[4,17],per:[0,12,18,20,26,35,63,72,75,76,77,78,79,80,83,89,91,96,97,101,102,105,106,117,119,125,127,137,141],percentag:105,perfect:124,perform:[15,16,24,43,44,46,51,56,58,62,63,82,99,100,101,125,126,128,138],perhap:42,period:[20,103,105,143],perl5lib:91,perl:102,perman:[4,58],permiss:[4,8,10,18,19,20,27,44,56,60,83,97,106,113,116,122,131,142],permisson:142,permit:[56,124,143],persist:[20,126,136],person:29,personel:26,perspect:57,pfx:2,pgrep:138,phish:39,phusion:139,phusion_passeng:83,physic:26,pick:[43,109],picker:124,pid:[12,63,66,80,83,138,141],piec:[63,109],pin:[29,51,84,106,109],ping:69,pinned_app:[20,29,84,102,109],pinned_apps_group_bi:[20,29,84,102,109],pinned_apps_menu_length:[20,84,109],pip3:[60,90],pip:[90,142],pipe:137,pirat:126,pittsburgh:51,pitzer:[56,97,99,137],pitzer_01_login:56,pixel:84,pizzazz:45,pkcs12:2,pkg_config_path:91,pki:[18,55,62],place:[10,14,20,29,42,44,45,55,56,60,62,91,96,109,129],plai:[107,109],plain:[20,45,53,57,102,142],plan:[58,106],plantuml:0,platform:[20,28,37,45,47,51,103,107],pleas:[4,14,17,20,23,35,45,51,52,55,58,69,85,93,94,96,97,98,99,100,101,102,103,104,105,107,113,114],plessing:101,plu:[132,134],plugin:[28,29,31,35,63,93,96,116,122,131],pn001:39,pn500:39,png:[15,20,37,44,84],pod:[62,136,137],point:[15,16,20,23,35,39,44,55,62,69,81,82,85,109,110,116,141,142],polici:[5,18,20,51,53,58,85,106],polish:29,poll:63,pom:5,pool:68,popul:[27,33,35,44,62,97,101,103],port:[4,14,18,19,39,44,45,49,50,51,58,85,87,89,103,106,136,137,140],port_cfg:136,portabl:43,portal:[4,8,9,11,12,13,14,20,30,39,51,53,71,83,85,94,95,96,98,99,102,103,104],portal_set:20,portion:[20,27,45,85,98],posit:[35,63,69],posix:[20,66],posixaccount:[4,17],posixgroup:4,possibl:[18,20,24,29,32,39,43,44,45,51,55,60,62,63,70,76,87,88,97,100,107,109,110,112,119,127,132,143],post:[16,31,33,51,52,58,90,97,98],potenti:[63,84,99,107],power:105,powerpoint:0,powertool:[57,102],ppc64le:105,ppn:[23,119,127],practic:106,pre:[20,62,85,96,101,116,122,131,134,141],preced:[20,35,62,85],precis:66,predefin:[27,31,43,45,103],prefer:[4,20,35,45,60,126,129,138],preferred_usernam:[8,19,85],preferredusernameattr:4,prefix:[20,62,83,84,85],prehook:62,prepar:[1,87,107],prepend:[20,24,84,102],prerequisit:[8,13,27],presenc:141,present:[20,22,24,27,30,35,42,49,100,102,103,116,122,131,137],preserv:91,preset:[18,42],press:17,prevent:[19,20,29,63,83,100,135,138,143],preview:102,previou:[20,24,35,95,96,97,98,100,101,142,143],previous:[20,96,97,98,101,102],prevwindow:126,prevworkspac:126,primari:[0,29,35,45,63,96,107],print:[7,39,60,62,63,82,87,119,127],prior:[12,20,34,35,91,97,98,100,102,103,128,143],prioriti:88,privaci:10,privat:[13,18,19,55,107,137],privileg:[20,22,62,63,81,85,106],privkei:85,privleg:98,pro:[42,65],probabl:[14,17],problem:[17,20,60,69,97,105,107,128],problemat:[100,104],proc:138,procedur:[9,107],proceed:57,process:[0,23,30,43,44,45,46,63,66,72,76,77,78,79,80,81,83,85,90,91,96,99,102,105,106,107,113,114,119,127,138,139,140,141],process_nam:50,processor:[23,24,35,119,125,127],prod:62,produc:[5,141],product:[14,18,20,29,50,54,56,62,69,83,85,96,97,98,99,100,101,102,103,104,109,116,122,131,137,141,143],production_profil:20,profession:[21,51,54,115,121],profil:[7,8,16,51,83,85,91,97,98,106,137],profile_link:[20,84],profile_nam:20,profiles_guid:20,program:[7,43,62,100],project1:20,project:[3,24,29,34,36,51,60,84,101,103,105,107,116,122,125,131,132,136,137,141,142],project_nam:20,project_typ:20,prolog:59,prometheu:[46,51,62],prometheusaddress:62,pronunci:126,proot:98,propag:[0,132,134],proper:[18,20,54,62,63,85,141],properli:[2,13,18,39,56,85,93,94,96,97,98,113],properti:[15,18,20,27,35,63,85,103,104],propog:67,protect:[20,85],proto:[18,20],protocol:[17,18,20,27,55,62,106],proven:58,provid:[1,2,4,5,7,8,12,14,15,17,18,19,20,29,30,31,34,35,36,40,42,43,44,45,49,50,51,52,54,55,56,58,61,62,63,66,69,82,85,87,90,91,96,97,100,101,103,104,106,115,121,124,125,129,130,134,136,140,141,143],provis:14,proxi:[0,1,10,12,14,18,19,31,38,51,72,75,83,105],proxy_serv:85,proxy_temp:80,proxy_us:83,proxypass:18,proxypassrevers:18,proxypreservehost:18,proxyrequest:18,psc:51,pstree:63,ptrace:132,pub:97,public_root:85,public_uri:85,public_url:[20,84],publicli:91,publish:[7,139],pull:[62,100,107,109,110,134,143],pun:[0,11,12,19,20,26,27,29,49,50,51,58,60,62,67,71,72,75,77,78,79,81,83,85,95,96,100,102,103,104,105,106,109,110,116,117,122,131,140],pun_access_log_path:83,pun_app_config:83,pun_config_path:83,pun_custom_env:[20,83,84,91,97,99,100,101],pun_custom_env_declar:[83,91,97],pun_error_log_path:83,pun_log_format:83,pun_max_retri:85,pun_pid_path:83,pun_pre_hook_export:85,pun_pre_hook_root_cmd:85,pun_secret_key_base_path:83,pun_sendfile_root:83,pun_sendfile_uri:83,pun_socket_path:83,pun_socket_root:85,pun_stage_cmd:85,pun_tmp_root:83,pun_uri:85,punctuat:99,puppet:[54,96],purdu:99,pure:[56,110,141],purg:[39,40,44,120,129,135],purpos:[20,29,45,63,84,101,126,136,137,143],push:141,put:[18,20,23,62,96,100,138],pwd:[5,29,44,126,142],pwd_cfg:136,python36:60,python3:[90,142],python:[28,44,51,83,102,103,113,114,117,119,120,127,129,136,139,141],python_hello_world:142,python_vers:35,pythonpath:91,pzs0001:43,pzs0002:20,pzs0562:141,pzs0714:[29,63],qdel:[65,66],qgi:52,qhold:[65,66],qos:101,qrl:[65,66],qselect:65,qstat:[65,66,101],qsub:[23,43,49,56,65,66,69,70,99,100,119,127],qsub_wrapp:66,qualiti:[35,101],quantifi:105,queri:[7,19,20,46,62,98,102],question:[6,63,96,97,98],queu:[48,66,69],queue1:[113,114],queue2:[113,114],queue:[20,23,24,35,43,51,63,69,88,94,99,111,113,114],queue_nam:[35,43,88,113,114],quick:[21,31,38,56,67,81,82,96,115,121,130],quiet:63,quit:[6,62,76,83],quot:[84,99],quota1:20,quota2:20,quota:[51,106,139],quota_additional_messag:20,quota_reload_messag:20,r2015b:125,r2016b:125,r2017a:125,r2018a:125,r2018b:125,rack:[28,139],rackapp:141,radio:36,radio_button:[35,36],rail:[20,30,69,91,97,98,100,103],rails_env:69,rais:[20,69],rake:[54,57,69,96,141],rakefil:141,ram:[63,105,125],ran:[20,63,90],rand:[18,19],random:[19,44],randomli:4,rang:[20,44,84,105,112],range_field:35,rational:[102,141],raw:[62,141],rc8:143,rclone:[20,84,103],rdynam:63,reach:[17,32,62,101,103,105,143],read:[4,7,12,18,20,22,30,35,39,44,55,60,62,63,66,67,81,84,85,88,89,98,100,102,103,113,114,119,127,136],read_onli:17,read_timeout:20,readabl:[4,8,19,20,29,62],reader:[6,53,57],readi:[29,109],readm:[52,97],readonli:20,real:[60,83,88,143],realiz:29,realli:[6,24,42,63,103],realm:[5,14,15,16,18,19,20,62],reapaft:62,reaper:62,reapnamespac:62,rearrang:[20,84],reason:[20,29,54,63],rebuild:[63,97,98,109,110],rebuilt:[97,102,103,104],recalcul:47,receipt:107,receiv:[16,24,39,107],recent:20,recently_used_app:[20,103],recip:63,recogn:[20,142],recognzi:140,recom:64,recommend:[4,8,14,18,20,22,23,29,30,40,43,44,45,55,56,62,81,82,83,84,85,95,98,100,101,104,106,109,117,119,120,127,129,135],reconfigur:[20,28,31,53,61,104],record:99,red:[20,35],redcarpet:99,redefin:24,redhat:[53,57,100,102,105],redir:80,redirect:[4,11,13,14,16,17,18,19,55,60,80,102],redirecturi:4,rediscov:63,reduc:125,ref:88,refer:[1,12,20,27,34,43,45,51,56,62,81,82,84,85,86,88,93,94,103,104,126,128,136,137],referenc:[20,34,35,56,62,103],reflect:[20,100],refrain:43,refresh:[24,62,109,113,114],regard:[3,11,20,35],regardig:20,regardless:[32,34,84],regener:[11,20],regex:[8,12,61],regist:[7,14,85],register_root:85,register_uri:85,registr:[1,16],registri:137,registry_docker_config_json:62,registry_password:62,registry_us:62,regular:[10,12,13,20,30,35,39,61,67,83,85,100,102,141,143],regularis:52,regularli:[42,106],reguluar:9,reinforc:106,reinstal:[97,98],rel:[20,23,45,83,84,85],relat:[3,20,49,101,102,103,128,143],releas:[50,51,57,62,65,90,107,141,143],relev:[20,35,49,51,62,79,102,143],reli:[12,45,56,62,85,97,98,100,102],reliabl:[99,126],relion:52,reload:[4,18,20,50,58,76,83,141],remain:[91,100,101],remedi:[61,138],rememb:[13,15,17,20,24,97],remot:[9,51,55,58,60,63,84,106,116,122,131,141],remote_addr:83,remote_files_en:84,remote_files_valid:84,remote_us:[12,19,83,85],remov:[10,14,15,20,21,29,40,60,63,66,67,73,84,88,90,91,94,97,98,100,101,102,103,113,114,141,143],renam:[35,44,94,113,140],render:[20,28,29,31,33,35,43,45,49,56,59,62,82,84,101,102,137,141],render_template_notes_as_markdown:99,reopen:[76,83],repackag:98,repeat:[20,35],replac:[10,15,16,18,19,20,28,30,35,47,50,54,55,56,60,61,62,64,65,66,67,69,70,82,85,91,98,101,102,103,104,112,113,114,116,117,119,122,125,126,127,131,132,141],repli:20,replic:0,repo:[4,5,8,19,29,57,97,102,103,109,110,116,122,131,141],report:[20,27,66,84,99,101,105,106],repositori:[29,42,52,53,96,97,98,105,107,143],repres:36,represent:141,req:[10,13,140],request:[10,12,14,18,19,20,23,27,34,35,39,42,43,44,45,47,51,59,72,75,80,83,84,85,88,96,98,102,103,107,111,119,124,125,126,127,140,141,142,143],requesthead:[10,13,18,19],requir:[2,4,5,8,10,12,13,19,20,21,22,24,29,31,34,35,36,37,38,44,50,51,54,55,56,58,60,61,62,63,64,67,69,81,83,85,87,90,100,101,109,111,113,115,116,117,121,122,124,125,126,130,131,132,134,137,138,140,141,142],requiresess:[10,13],requri:142,rerun:63,rerunn:88,res:140,research:[7,51,101],reserv:[63,88],reservation_id:88,reset:[102,103,104,141],resid:[10,42,54,69,83,85],resiz:[101,111,128],resolut:[35,36,125],resolution_field:[35,36],resolv:[20,55,63,97,103],resourc:[0,5,7,15,18,20,22,23,26,35,43,47,50,51,53,54,56,61,62,64,65,66,67,68,69,70,84,85,96,99,100,103,106,111,113,114,115,121,130,137],resource_id:20,resource_mgr:20,respawn:126,respect:[20,23,31,43,80],respond:[34,85],respons:[12,20,24,27,45,47,56,57,94,98,107,117,119,125,127,132,142],rest:[18,30,63],restart:[2,4,10,18,19,20,29,39,46,50,53,72,96,101,102,103,104,109,113,141],restart_polici:[136,137],restor:[20,56,98,126],restrict:[10,12,18,20,29,30,62,83,85,97,112],restructur:103,result:[20,27,29,43,49,60,63,69,85,96,97,98,100,103,141],retain:[45,97],retriev:[2,98],reus:[18,20],reusabl:136,revers:[0,1,31,38,51,72,75],revert:[30,97,98],review:[48,53,57,106],revisit:69,revok:63,rewrit:85,rewriteengin:85,rewritten:[100,102],rex:12,rhel7:[1,53,98,137],rhel:[8,47,50,53,55,57,63,69,82,97,98,102,103,104,137],rice:100,right:[17,20,29,35,36,40,44,60,69,84,102,109,113,114,116,122,131,134,141],risk:[39,85],rnode:[39,45,52,85],rnode_uri:[39,85],road:49,robin:63,robinkar:103,robust:[20,106,132],rocki:[8,47,50,57,102,103,104,105],rockylinux:[53,57,90],role:[27,37,54,62,107,137],rolebind:62,root:[4,8,10,17,18,19,20,22,23,29,33,34,35,37,43,44,45,49,50,57,62,63,66,69,72,80,81,83,85,90,91,96,98,100,106,109,117,118,119,123,125,126,127,132,133,140,141],root_uri:85,rotat:62,round:63,roundrobin:63,rout:[47,140,141,142],router:[20,140],row:[20,27,101,102],rpm:[8,46,57,65,82,85,90,97,98,99,100,101,102,103,104,105,135,141,143],rpmsave:98,rserver:[132,134],rss:[20,84,141],rstudio:[20,39,45,49,51,52,54,85,88,93,96,105,111,132,134,135],rstudio_contain:132,rstudio_group:20,rstudio_guid:20,rstudio_launcher_centos7:132,rstudio_server_imag:132,rubi:[0,20,23,24,27,28,30,32,34,35,43,44,45,50,57,83,88,91,96,98,99,100,103,104,113,119,127,137,139,141,143],ruby22:[97,98],ruby24:[69,100],ruby25:[83,102],ruby27:[102,103],rubydoc:[119,127],rubylib:91,rule:[13,18,35,63,85],run:[0,3,4,5,7,12,14,17,18,20,21,23,25,26,28,29,30,33,35,38,39,40,41,44,45,49,50,55,56,57,58,59,61,62,63,64,66,67,69,76,78,79,80,81,82,83,85,87,89,90,91,98,101,105,106,109,110,115,116,117,119,120,122,125,127,128,129,130,131,134,135,136,137,139,142],run_as_group:136,run_as_us:136,run_fil:87,run_owens_script:44,run_remote_sbatch:60,run_script:87,runasgroup:62,runasnonroot:62,runasus:62,runscript:134,runtim:[33,125,129,132,134,142],sacrific:99,safari:105,safe:[45,98,101],safer:56,safeti:[20,107],sai:[20,34,42],salt:136,same:[14,18,20,27,29,31,42,45,56,62,63,64,67,96,98,100,102,103,109,126,134,136,137,141],saml:[1,7,53],sampl:20,sandbox:[29,35,43,44,45,95,109,110,113,114,116,117,118,122,123,131,133,140,141,142],sanit:[9,124],satisfi:[8,13,57],saumyabhushan:103,save:[4,5,16,17,18,20,58,62],save_passwd_as_secret:136,sbatch:[23,43,49,56,60,67,100,119,127],sbatch_wrapp:56,sbin:[4,10,13,18,19,20,39,47,50,82,83,85,91,99,100,101,102,103,104],scaffold:141,scan:12,scancel:[56,67],scenario:[43,83,103],scgi_temp:80,schedul:[20,24,26,32,35,49,54,56,60,61,62,63,68,84,88,96,100,137],schema:[20,51,54],scheme:[20,35,42,84,100,143],scienc:[7,103],scipi:136,scl:[30,69,83,91,97,100,141],scl_sourc:[98,141],scontrol:[56,67],scontrol_wrapp:56,scope:[8,13,16,18],scrape:50,scrape_interv:50,scrape_timeout:50,scratch:[20,36,136,137],screen0:126,screen:[29,94],screeshot:20,script:[23,29,31,35,40,42,51,54,56,62,63,66,67,82,83,84,86,87,89,91,97,98,99,101,102,106,109,111,113,114,117,119,121,124,125,127,128,132,134,135,136,137,138,140,142],script_dir:142,script_fil:[43,87],script_pid:66,script_wrapp:[39,40,56,66,67,87],scroll:17,scrub:87,seamless:143,search:[7,10,20,49,83,102],search_field:35,second:[20,35,43,44,62,63,69,83,87,88,89,99,104,113,114,125],secondari:[128,138],secondli:[20,27],secret:[4,10,16,17,19,62,83,136],secret_key_bas:83,section:[1,9,20,23,24,35,42,62,88,96,98,101,103,106,107,113,114,117,119,127,136,137,141,142],secur:[2,5,7,8,12,17,20,39,44,51,53,57,62,63,85,90,92,141,143],security_csp_frame_ancestor:85,security_strict_transport:85,securitycontext:62,see:[0,2,3,4,7,11,12,15,18,19,20,22,23,24,27,29,30,34,35,39,42,45,47,48,49,52,53,55,56,57,58,61,62,63,84,85,86,87,93,94,96,97,98,99,100,101,102,103,104,107,108,109,110,113,114,116,117,118,119,122,123,125,126,127,131,133,136,140,141,142],seed:141,seen:[20,35,49,62,63,101,143],segment:20,select:[5,15,16,17,23,24,29,31,35,36,60,62,63,84,88,95,96,101,102,112,113,114,119,124,125,126,127,137,138],selector:36,self:[5,18,20],selinux:[51,53,57,102,104],send:[20,23,27,39,57,58,60,76,83,85,88,89,140],send_256_colors_to_remot:126,sendenv:20,sendfil:83,sens:[34,50,119,125,127],sensit:[18,35],sent:[12,13,16,20,35,45,60,83],sentenc:20,sep:18,separ:[11,12,14,20,24,34,96,99,102,104,141],seper:[20,85,90,104],septemb:20,sequenc:[0,91,97],seri:[20,103],serial:[7,8,35,85],serivc:62,serv:[0,1,18,20,29,47,57,83,85,96,100,102,105,137,140,141,142],server:[0,1,4,8,10,11,12,13,14,19,20,23,26,28,31,33,35,39,40,41,44,45,52,53,54,55,57,58,61,62,65,67,69,70,72,75,80,82,83,85,86,93,96,97,106,109,113,115,117,119,120,124,125,127,129,130,132,134,135,136,137,139,141,142],server_alias:85,server_develop:15,serveralia:85,serverdir:64,serverlimit:47,servernam:[4,8,18,47,50,55,57,85],serverroot:85,servic:[1,3,7,18,20,27,35,39,46,50,51,53,62,63,82,100,101,102,103,104,106,135],serviceaccount:62,serviv:19,sescur:62,session:[9,13,19,21,22,28,31,33,39,46,48,51,56,59,63,67,72,79,84,85,93,99,101,102,104,106,117,126,141],session_context:[116,122,131],session_descript:20,session_id:[20,44,102],set:[1,4,5,7,11,12,13,15,17,18,19,21,22,24,27,29,30,31,33,35,36,38,40,42,44,51,56,57,58,59,60,61,62,63,65,66,67,70,83,84,85,87,88,89,91,96,98,101,102,103,106,108,110,113,125,126,128,132,136,138,140,143],set_host:[39,87,119,127],setenv:[85,98,132],setsebool:[58,100],setsid:59,setup:[1,5,9,16,17,20,21,27,31,39,51,53,57,62,63,67,85,106,109,110,111,112,115,121,130,137,139,140,142],setup_env:132,sever:[3,20,35,58,62,63,83,98,100,102,103,107,108],sge:[51,66,101],sge_root:66,sh_jupyt:52,sh_ood:52,sh_rstudio:52,sh_tensorboard:52,sha1:136,shade:84,shanghai:[52,101],shape:[34,107],share:[4,20,28,51,55,83,126,137],shawn:100,shebang:[60,87,100],shelf:63,shell:[26,28,29,30,43,51,54,56,58,61,63,67,81,83,84,85,87,88,94,95,98,105,106,108,109,141],shell_path:88,shib:13,shibboleth:[1,10,11,53,85],shibcompatvalidus:13,shibrequestset:[10,13],shibsess:10,shift:62,shini:52,shinyusr:29,ship:[4,42,62,102,103,104],shortcut:[51,100,102,103,106],shorter:84,should:[7,10,12,16,18,19,20,21,22,23,24,29,35,37,45,46,47,49,50,52,53,55,56,57,58,60,61,62,63,65,67,72,75,83,84,85,87,88,89,91,96,97,98,100,101,102,103,109,110,113,116,117,122,124,125,126,131,137,140,141,142,143],shouldn:87,show:[14,18,20,24,29,30,34,35,36,46,49,56,60,79,82,83,84,93,94,98,102,103,110,124,136,141],show_all_apps_link:[20,84],show_fil:36,show_hidden:36,shown:[20,34,35,36,37,84,99,103,119,127],shub:134,shut:62,side:[20,84,85,97,124,125],sif:[23,63,87,90],sign:[1,18,20,53,55],signal:[76,83,85],significantli:[18,29,110],signingkei:4,simg:[132,134],similar:[20,29,30,47,50,59,63,66,96,98,101,107,136,141],similarli:[53,102,119,127],simpl:[12,19,20,35,39,40,44,45,84,101,136,140,141],simplehttpserv:44,simpler:[12,20,34,35,56,85],simplest:[12,18,20,24,35,43,45,54,62,114,119,127],simpli:[20,24,42,56,61,63,100,101,103,109,140,142],simplic:134,simplifi:[14,20,39],simul:20,simultan:47,sinatra:141,sinc:[7,12,17,18,19,20,23,24,35,39,56,62,85,91,96,97,98,104,105,119,127],singl:[1,16,20,23,35,36,45,63,66,69,84,85,101,102,119,127,136,137],singuarl:134,singular:[0,63,87,90,98,111,130,132,135],singularity_bin:63,singularity_bindpath:[23,63,132],singularity_contain:[23,63],singularity_imag:63,singularityenv_ld_library_path:132,singularityenv_path:132,singulartity_bind_path:88,sinit:63,sit:[4,103],site:[0,4,7,12,14,15,20,22,26,29,34,35,39,42,45,50,51,52,53,55,56,62,63,67,68,85,96,97,98,99,100,101,102,103,104,105,125,129,136,137,143],site_mapp:85,site_timeout:63,size:[24,34,35,44,51,83,89,102,105,106],sjtu:[52,101],skip:[20,72,76,77,80,82,136,137,141],sleep:[59,126,138],slightli:[29,84,102],slower:20,slurm:[20,21,35,43,51,53,54,56,58,59,60,88,100,111,113,114,115,121],slurm_arg:137,slurm_export_env:67,slurm_job_gr:59,slurm_localid:59,small:[27,34,43,45,102],small_clust:43,smaller:[20,94],smallest:87,smtp:[20,58],sock:[79,80,83],socket:[0,18,39,79,83,85,99,137,139],soft:136,softar:98,softwar:[0,2,4,18,21,29,30,38,51,53,83,91,96,97,98,103,104,111,115,117,121,125,130,132,141],solid:126,solut:[17,45,83,112,128],solv:[60,128],some:[0,1,8,18,20,22,23,24,30,32,34,35,41,42,43,44,45,48,50,55,57,58,59,62,66,83,84,85,88,95,96,97,98,100,101,102,103,104,106,108,109,119,125,127,136,137,138,142],someelementid:102,someth:[12,20,23,24,27,62,63,69,87,89,109,119,125,127,136,140,141],sometim:110,son:66,soon:[15,63,88,96,107],sophist:102,sophstic:20,sort:[27,46],sortabl:102,sourc:[1,24,29,44,46,51,52,55,66,69,85,87,91,98,99,136,141,142],space:[20,56,103,109,110,136],spam:20,spark:52,spassword:89,spawn:137,spec:[20,53,56,57,111],special:[20,23,36,37,42,43,63,81,92,98,116,122,131],specif:[0,4,7,10,17,20,24,27,29,30,35,38,42,43,44,50,52,56,58,62,83,84,85,88,89,91,96,97,98,103,104,106,107,113,114,125,136,137,141],specifc:126,specifi:[19,20,23,24,27,28,29,31,35,37,39,44,45,50,52,56,61,62,63,76,80,81,83,84,85,88,89,91,96,98,101,102,103,119,127,136,137,141],speed:[96,99],sperat:42,spi:[1,17,18],spider:84,spin:109,split:[100,102,141],sprintf:56,spw:141,sqlite:4,squeue:[56,67,97,99],squeue_wrapp:56,src:[4,5,63,96],srun:[67,100],srv:[20,23,61,63,132],srw:80,ssh:[30,39,44,45,51,54,56,58,60,62,63,64,65,66,67,70,99,101,102,106],ssh_allow:[20,56,62],ssh_host:[63,102],sshd:63,ssl:[2,4,14,18,53,55,85],ssl_protocol:85,sslcacertificatepath:18,sslcertificatechainfil:[18,55,85],sslcertificatefil:[18,55,85],sslcertificatekeyfil:[18,55,85],sslengin:18,sso:[11,13,20],sss:137,sssd:[58,98,137],stabil:143,stabl:[96,143],stack:63,staff:[20,49,100],stage:[20,31,44,51,71,80,83,85,95],staged_root:[44,126,137],stale:73,standalon:[5,18],standard:[12,18,20,34,44,56,62,83,88,106,132,137],stanford:52,stanza:56,start:[0,1,4,7,14,15,20,21,22,23,33,35,38,39,43,44,48,49,50,51,53,55,59,61,62,63,67,76,83,84,85,88,89,90,91,93,94,96,97,100,101,102,109,110,113,114,115,117,121,125,126,128,130,135,136,138,139,140,141,142],start_dat:27,start_index:27,start_respons:142,start_tim:88,starter:[51,86,139],startserv:47,startup:[28,84,89,128,139],stat:141,stata:[52,138],stata_pid:138,state:[16,32,51,100,109],statement:[23,30,56,87,119,127,137],static_config:50,staticcli:4,staticmaxag:18,statu:[18,20,27,50,51,53,66,69,80,83,94,96,101,139],stderr:[49,60,69,99],stdin:60,stdout:[12,49,60],step:[5,14,20,30,35,36,38,95,96,98,100,107,109,110,118,123,125,133,141,142],step_siz:27,stick:18,still:[15,20,24,29,30,34,36,55,56,58,90,94,97,98,100,102,103,107,109,141],stop:[18,19,20,44,76,83,88,135],storag:[4,62,84,136],storage_fil:4,store:[2,4,20,45,55,83,84,85,91,94,101,102,141],str:60,strategi:[11,63,102,107,141],stream:98,streamlin:137,strict:[63,85],strict_host_check:63,stricthostkeycheck:63,strictli:138,string:[4,10,11,12,20,23,24,34,35,39,43,44,56,63,69,81,83,84,85,87,88,89,90,96,97,98,102,113,114,140,141],strip:[10,13,19,44,85,141],struct:141,structur:[20,31,80,96,137],student:102,studio:52,style:[20,141],styleoverlai:126,stylesheet:20,stylist:45,styliz:31,sub:[7,19,28,31,45,72,75,85],sub_capt:20,sub_request:72,sub_uri:[72,75],subapp:[42,97],subcategori:[20,37,141],subdirectori:[20,142],subject:20,submenu:20,submiss:[21,22,24,28,31,33,35,49,51,56,60,61,64,65,66,67,69,70,86,117,119,127],submission_nod:60,submit:[0,20,22,23,24,26,28,29,31,32,33,40,41,42,44,45,51,52,53,54,56,60,62,63,69,70,71,84,88,95,96,97,98,99,101,102,107,111,112,113,114,115,116,117,121,122,124,125,131,141],submit_arg:69,submit_as_hold:88,submit_host:[63,64,65,66,67,70],submit_script:[119,127],submodul:5,subscript:[57,102],subsequ:[35,61,63,72,80,103],subset:[20,29,100,102],subshel:126,substitu:49,substitut:[23,43,45,66,113,119,127],subsystem:18,subtitl:20,success:[18,20,24,51,60,61,63,82,96,106],successfulli:[3,12,22,96],succss:49,sudo:[4,5,8,10,13,18,19,20,29,30,39,47,50,54,55,57,58,63,69,72,73,74,75,76,77,78,79,80,81,85,96,97,98,99,100,101,102,103,104,105,116,118,123,133,141],sudoer:[50,134],suffici:[14,62,102,132],suffix:20,suggest:[20,47,103,107],suit:[102,132],sum:63,summari:[8,29],sun:[66,97],supercomput:[51,56,63,96,137],supercomputing_support:20,superior:129,supplement:[29,62],supplementalgroup:62,suppli:[1,4,12,20,23,35,42,43,44,62,69,83,84,85,88,103,104,113,114],support:[1,4,6,10,13,14,19,25,29,34,35,38,41,43,51,53,56,57,61,63,64,65,66,67,83,85,93,94,102,106,124,125,137],support_ticket:[20,84],support_url:20,suppos:[49,56,84,109],supremm:101,sure:[12,16,19,20,44,52,57,63,83,109,113,117,125,132,141],svc_acct_fil:62,svg:[20,37],swap:134,swester:103,symbol:20,symlink:[20,29,30,83,97,98,109,110,116,132],syntax:[33,35,66,119,127],sys:[11,19,20,24,27,29,30,42,44,49,60,69,72,83,84,85,91,94,96,97,98,100,103,109,110,116,118,122,123,131,133,140,141,142],sysconfig:[4,58],syslog:12,system:[2,4,7,8,12,13,18,23,28,34,35,42,43,44,45,46,50,51,53,54,55,57,58,63,69,72,73,76,82,83,84,85,88,93,94,95,96,97,98,100,102,103,104,106,109,113,116,118,119,122,123,125,127,131,132,133,134,142,143],systemat:12,systemctl:[2,4,18,19,20,47,50,57,63,100,101,102,103,104,135],systemd:[4,18,50,51,54,82,100],systemtrai:126,tab:[5,17,19,20,56,62,84,95,102,109,116,122,131,140,141,142],tabl:[7,62,72,93,94,95,96,97,98,99,101,102,141],tag:[18,20,51,84,96,97,110,113,141],taglin:98,tai:126,tail:[66,138],take:[1,10,12,18,20,23,24,29,33,39,43,45,53,63,82,95,96,97,98,102,109,113,114,115,121,130],taken:[24,43,98],tandi:51,tap:[20,103],tar:[18,50],target:[5,18,27,33,50],task:[54,69,96,100,125,138,141],tcp:[0,4,58],team1:[20,84],team:[20,29,85,97,100,101,103,107,138,143],technic:0,techniqu:33,technolog:51,technot:128,techsquareinc:52,tee:63,telephone_field:35,tell:[12,20,34,57,62,63,113,114],templat:[5,23,28,31,33,35,45,51,56,63,75,82,83,86,87,88,89,90,96,106,113,114,119,125,126,127,128,132,137,138,141],template_root:83,temporari:[44,97],temporarili:87,ten:[20,39,56],tensorboard:52,term:[26,42,96],termin:[61,84,102,110,121,126,129],terribl:60,tesla:125,test:[5,12,20,24,30,36,39,46,51,54,56,57,62,85,90,93,94,96,97,98,99,100,101,102,103,104,109,117,143],test_checkbox:36,test_command_output_pars:141,test_hidden_field:36,test_job:69,test_jobs_cluster1:69,test_resolution_field:36,test_text_area:36,test_text_field:36,testcommand:141,texa:51,text:[15,16,24,29,35,36,37,51,53,63,84,88,99,102,106,113,114,140,142],text_area:[20,35,36],text_field:[35,36],textarea:36,than:[8,12,17,20,24,35,43,47,49,67,83,84,85,95,100,101,102,110],thank:[92,97,99],the_answ:60,the_connect_api:[87,89],the_quest:60,thei:[6,7,12,16,20,24,27,29,30,32,34,35,42,43,49,54,58,62,63,85,87,89,90,91,97,98,100,101,102,103,116,122,124,125,131,136,137,141,143],them:[5,10,20,24,29,30,32,35,36,42,45,54,56,61,62,84,101,102,103,116,122,131],theme:[1,4,5,14,18,51,84,106],themselv:[20,29,35,62,116,122,131,135,138],theori:109,therebi:106,therefor:81,thi:[0,2,3,4,6,7,8,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,27,29,30,32,33,34,35,36,37,38,39,40,41,42,43,44,45,47,49,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,82,83,84,85,86,87,88,90,91,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,112,113,114,115,116,117,119,121,122,124,125,126,127,128,129,130,131,132,134,136,137,140,141,142,143],thing:[14,20,27,29,35,46,49,56,62,85,97,98,102,106,108,137],think:[23,107],thirteen:102,this_remote_username_does_not_exist:12,those:[6,17,20,29,30,35,62,63,84,91,98,100,103,109,132,141,142],though:[67,85,102,103,109,136,143],thought:60,thread:18,threadlimit:47,threadsperchild:47,three:[9,18,20,35,43,45,91],threshold:[20,97,100],through:[0,4,12,19,20,21,24,27,29,35,36,38,39,45,61,62,63,83,84,85,87,91,93,96,99,100,101,102,103,104,105,106,107,109,112,113,115,117,121,125,130,132,136,137,141],throughout:[18,37,51,88],thu:[20,29,96],thumb:35,ticket:[51,53,57,84,106,107],tid:12,tie:84,tile:20,till:20,time:[1,12,16,18,20,27,29,32,34,35,43,44,47,51,57,62,63,83,84,85,87,88,96,99,101,102,103,105,107,117,125,126,132,134,141],time_loc:83,timeout:[44,63,87,89],timeoutstartsec:18,timeoutstopsec:18,timer:68,timestamp:[20,27,62],tip:[46,51],titl:[20,22,23,24,39,40,54,56,61,62,63,64,65,66,67,70,83,84,98,99,113,141],tls:[18,55,62],tls_cert:4,tls_kei:4,tlscert:4,tlsclientca:4,tlskei:4,tmp:[4,50,57,60,63,80,83,88,97,98,102,104,105,132,141],tmux:63,tmux_bin:63,to_:[87,141],to_i:[23,24,43,44,119,127,136,137],todo:62,togeth:[42,63],toggl:[20,34,37,103],token:[16,20,49,66,83,85],tong:[52,101],too:[63,87],tool:[24,31,43,45,62,63,82,105,108,120,126,129,135],toolbar:126,top:[17,20,22,35,56,88,100,101,113,116,122,131,140,141,142],topic:[3,6,106,107],torqu:[20,21,35,43,51,53,54,56,58,69,88,113,114,115,121],total:[20,29,34,100,101],total_block_usag:20,total_file_usag:20,touch:[20,109,141,142],toward:95,toyota:[35,113,114],trace:141,track:[69,85,97,98],tradit:[24,63,136,137],traffic:[12,20,47,53,103,106],transfer:84,transit:106,translat:[20,101],transport:[20,57,85],tre:97,treat:[20,30],tree:[33,53,57,96,102,126],trigger:[20,98],trivial:134,troubl:[49,96,117],troubleshoot:[20,46,47,49,51,57,111],trust:[2,17,18,29,39,55,97,107],trustedci:99,truststor:[17,18],truststore_hostname_verification_polici:18,truststore_password:18,truststorespi:17,truthi:99,tty:141,tue:12,tuesdai:96,tuft:51,tune:46,tunnel:[44,45],turbovnc:[39,40,41,89,90,105],turbovncserv:90,turn:[13,20,32,58,62,63,64,103,138],tutori:[1,14,17,18,19,51,52,57,62,98,101,108,109,112,115,116,121,122,130,131,136,137,141],tweak:85,twice:105,two:[1,8,14,15,17,20,24,29,34,35,44,49,53,56,62,63,84,93,94,96,97,98,100,101,102,103,104,116,122,131,132,141,142,143],txt:[7,20,83,84,141,142],txt_erb:20,type:[4,17,18,20,23,24,31,34,35,36,45,49,50,56,62,63,72,83,84,96,102,116,119,122,124,125,126,127,131,134,136,137,142,143],typic:[23,24,30,31,45,49,58,83,85,97,102,116,122,131,143],ubuntu:[2,47,53,55,57,102,104,105],ucla:[51,97],uge:66,uid:[4,20,30,56,62,63,83,102,136,137,141],ultim:20,umask:[44,126],unabl:[20,24,27,44,63,66,69],unauthor:[51,106],unavail:[20,102],unchang:[97,98],uncheck:[34,36],unchecked_valu:36,uncom:18,under:[4,10,19,20,22,24,29,35,39,43,44,45,54,58,69,72,76,80,81,83,85,86,87,91,95,97,98,104,106,107,112,113,114,116,117,119,122,125,127,131,132,141],undergradu:102,underli:[119,127],underneath:[20,22,23,24,96,113,114],underscor:[20,34,35],understand:[43,85,136,137],undertow:18,underwai:[100,106],undesir:101,unencrypt:106,unexpect:66,unicod:99,uninstal:[102,103],unintend:[20,83],uniqu:[7,20,44,83,97,105,116,122,131],unit:[4,18,20,136,141],univa:[66,97],univers:[51,52,101,125],unix:[0,2,20,35,79,83,84,85,89,139],unknown:[55,63],unless:[20,23,43,82,83,91,125],unlik:[12,56,109],unnecessari:85,unpack:18,unprivileg:[20,30,63],unread:20,unsaf:84,unset:[10,13,19,20,136],unshar:63,unsupport:56,unsuspect:39,untest:120,until:[16,20,44,63,69,96,97,98,126],untouch:45,unus:[62,100],uofu:52,updat:[4,5,16,19,20,27,29,39,42,51,53,57,62,63,75,82,83,84,90,93,94,95,96,97,99,101,106,117,119,127,134,136],update_ood_port:[4,10,13,19,20,39,82,98,99,100,101,102,103,104],upgrad:[10,20,39,69,92,106,143],upload:[51,83,84,102,106],upload_en:84,upon:[24,107],upper:[5,12,16,109],uppercas:35,uppi:102,upstream:20,upto:20,uri:[4,11,17,19,20,45,72,75,83,85,140],url:[2,11,12,16,17,19,29,37,39,45,51,52,56,63,72,80,81,83,84,85,97,102,106,109,110,116,118,122,123,131,133,140],url_field:35,urldecod:12,usabl:[16,102],usag:[20,27,29,56,62,64,82,85,97,99],use:[0,2,4,7,8,10,12,13,14,15,16,17,18,19,20,21,23,24,27,29,32,33,34,35,36,39,40,42,43,44,45,54,56,57,58,59,60,61,62,63,66,67,68,69,82,83,84,85,87,88,89,90,96,97,99,100,103,104,105,109,110,113,114,115,117,119,121,124,125,127,130,132,134,136,137,139,140,141,142],use_job_pod_reap:62,use_mainten:[20,85],use_nfs_home_dir:58,use_rewrit:[20,85,99],use_uid:63,useabl:56,used:[4,11,12,13,15,16,19,20,23,26,33,35,37,39,40,42,43,44,45,49,50,53,56,58,60,61,62,63,82,83,84,85,88,90,95,96,97,98,100,101,102,103,104,113,117,119,120,124,125,127,129,132,135,137,141],useful:[20,29,30,35,36,44,45,49,51,56,58,62,85,87,96,101,117,125,138],useless:84,user1:20,user:[1,2,4,5,6,8,9,10,11,13,14,17,18,19,21,22,23,24,26,27,28,29,30,31,32,34,36,39,40,42,43,44,45,49,51,53,54,56,57,58,60,66,69,72,75,76,77,78,79,80,81,82,83,84,87,88,89,91,93,95,96,97,98,99,101,102,103,105,106,107,112,113,114,115,116,117,119,121,122,124,125,126,127,128,130,131,132,134,136,137,138,141],user_defined_context:117,user_env:[12,85],user_map:12,user_map_cmd:[7,8,12,85,102],user_map_match:[12,13,85,102],user_nam:20,user_path:134,user_regex:83,user_set:84,user_settings_fil:84,useradd:[4,18],userattr:4,userinfo:[7,16],userknownhostsfil:63,usermatch:4,usermod:29,usernam:[4,5,7,12,20,27,50,56,61,62,83,85,89,102,103,116,136],username_prefix:62,usernameplacehold:20,usersearch:4,uses:[7,12,13,19,20,23,30,33,40,52,56,57,60,62,63,70,83,88,91,96,101,102,103,105,113,134,139,140,141],using:[0,1,3,4,7,8,12,14,17,18,20,21,23,29,31,33,34,35,39,43,44,45,47,50,53,54,55,56,58,59,60,62,63,66,75,83,84,85,88,91,94,96,97,98,100,101,103,104,105,109,110,113,116,119,122,124,126,127,131,132,136,137,139,141],usr:[2,4,20,23,29,30,39,40,50,55,56,59,60,61,62,63,64,65,66,67,69,70,72,80,83,89,90,102,132,136,137,142],usual:[20,60,105,109],utah:[51,52],utf:[60,90],util:[7,29,43,63,87,93,94,95,103,105,125,136,141,143],utility_img:136,uuid:[32,63],uuid_s:63,uuid_tmux:63,uuidgen:63,uwsgi_temp:80,v8314:[97,98],vagrant:58,valid:[2,8,10,13,17,19,20,22,60,61,62,70,83,84,85,99,100,117,119,124,125,127,132],valu:[4,5,12,16,17,18,20,21,31,33,35,36,37,39,40,42,43,45,47,56,58,60,62,63,64,65,66,84,85,87,91,99,101,113,114,116,117,119,122,124,125,127,131,132,141],varaibl:62,vari:[17,20,35,47,85,143],variabl:[12,20,23,29,30,32,33,35,40,43,44,45,60,62,69,83,84,85,87,88,89,91,97,99,100,101,102,103,109,113,119,127,132,136,137],variant:[20,34,42],variat:12,varieti:29,variou:[4,20,35,45,53,54,57,83,84,85,101,106],vdi:[20,96],vector:60,vendor:[17,18,97,98,141],vendor_rubi:83,venv:142,verbatim:125,verbos:85,verheyd:100,veri:[1,24,35,39,49,61,67,84,87,103,116,122,131],verif:18,verifi:[5,14,17,18,19,20,38,53,54,62,96,97,98,100,101,102,104],version:[1,4,5,12,15,20,27,34,35,36,42,47,49,50,51,56,62,63,82,83,84,92,100,101,102,104,105,107,120,125,126,132,134,141,142],vglrun:126,via:[0,2,4,7,15,18,19,20,29,46,56,58,60,91,93,98,107,125],view:[15,17,20,28,29,31,33,54,62,87,94,95,102,103,106,116,117,119,122,127,131],viewer:20,vigil:106,vim:109,virtual:[85,104,139],virtualbox:58,virtualgl:[126,129],virtualhost:[18,46,57],virut:85,vis:[59,125,126],visibl:[101,102],visit:[20,45,107],visual:[0,52,102,125,126],vital:107,vmd:52,vnc:[28,31,35,36,39,40,41,44,47,56,63,66,85,86,87,93,125,126,127,138],vnc_arg:89,vnc_clean:89,vnc_contain:[43,90],vnc_passwd:89,vncserver:89,volum:20,volume2:20,volvo:[35,113,114],vpn:100,vsz:141,vuej:124,vuler:106,vulner:[20,103,106],wai:[12,20,30,35,42,43,45,57,62,63,69,96,97,98,100,101,102,103,109,132,136,137],wait:[44,60,89,98,117,125,138],walk:[21,27,38,112,113,115,117,121,125,130,132,136,137],walkthrough:[1,95],wall:[43,44,88],wall_tim:[35,43,88,136,137],walltim:[63,69,101],want:[18,19,20,22,23,24,27,30,32,34,35,36,39,42,43,44,45,47,49,54,56,57,62,83,88,96,97,98,99,100,101,102,106,109,113,114,116,119,122,125,126,127,131,136,137,140,141],wantedbi:18,warn:[29,39,49,51,56,69,85,96,99,102,103,106,116,122,131],weak:99,web:[0,4,10,13,15,16,17,19,20,26,27,28,29,35,40,43,44,45,47,49,50,57,58,60,63,72,73,74,83,84,85,95,96,97,98,99,100,101,102,103,104,105,109,113,114,117,119,127,139,141,142],web_2:102,web_3:[57,104],webdev07:18,webframework:101,webinar:51,webpack:124,webpag:[34,47],webserv:18,websit:[3,51,85],websocket:[51,89,105,106,141],websockfii:89,websockfiy_cmd:89,websockifi:[39,40,41,89,90,103,105],websockify_cmd:[39,40,89],websockify_heartbeat_second:89,webtest04:141,wed:12,week:[45,143],welcom:[29,84,143],welcome_html:20,well:[4,7,8,12,15,19,20,24,43,45,46,47,49,52,57,62,76,81,83,84,85,95,96,97,98,101,103,112,121,125,137],went:96,were:[12,18,27,35,51,73,82,84,96,97,98,99,100,101,102],wget:[2,18,50,57,62,102,104],what:[7,8,12,17,20,34,35,39,43,49,52,53,56,57,62,63,66,83,84,85,89,90,100,102,103,106,109,113,114,125,136,141],whatev:[20,22,47,97,109,125,126],whati:132,when:[1,4,11,12,13,16,18,19,20,22,23,24,26,29,32,33,34,35,36,37,43,44,45,47,49,55,56,58,60,61,62,63,64,67,80,82,83,84,85,87,88,91,94,95,96,97,98,100,101,103,104,105,109,110,111,113,114,116,117,119,122,125,126,127,128,131,132,136,137,140,141,142],whenev:[24,96,99],where:[10,12,18,20,26,29,30,34,35,36,44,45,49,54,55,62,63,66,79,83,84,85,88,97,99,100,101,103,105,113,114,116,117,119,122,125,127,131,132,134,136,137,139,141,142,143],whether:[18,35,49,56,63,84,88,96,99,116,122,124,131],which:[4,7,11,14,15,18,19,20,22,23,24,27,30,31,33,34,43,47,49,52,56,58,60,62,63,84,88,91,96,97,98,100,101,102,103,104,105,106,108,109,113,114,119,125,126,127,132,134,135,136,137,138,141,143],whichev:20,white:20,whitelist:98,whitelist_path:[97,103],whitespac:20,who:[30,51,77,99,101,103,104],whoami:62,whoever:29,whole:[84,101,109,125,137],whom:29,whorka:103,whose:[20,35,97],why:[27,29,128],wide:[35,62,96],widest:105,widet:104,widget:[20,28,31,35,84,88,113,114,125],width:20,widthperc:126,wildcard:[20,83,85],wildfli:18,willing:[101,105],window:[20,37,45,111,121,128,129,141],wipe:10,wish:[20,27,29,35,45,62,84,90,101,103,104],within:[10,12,20,21,25,33,35,37,41,44,45,63,83,84,85,104,106,107,108,113,114,115,117,119,120,121,127,128,129,130,135,142,143],without:[1,5,20,35,42,46,51,54,56,57,60,63,83,84,85,96,97,98,100,101,102,103,121,132,134,141],won:[19,54,80,85,102,113,114,142],word:[34,99,109,110],work:[1,4,9,14,15,18,20,22,27,29,30,35,38,42,43,45,49,50,51,52,54,56,57,59,62,63,67,83,85,87,88,96,97,98,99,100,101,102,108,109,110,112,116,117,120,122,125,126,128,131,132,134,136,137,138,141],work_dir:87,workbench:52,workdir:88,worker:[56,62,137],workflow:[20,44,102],working_dir:136,workspac:44,workspacenam:126,world:[19,85,140,142],worth:12,would:[1,10,12,18,19,20,22,23,24,27,29,34,35,39,42,43,44,49,51,52,53,57,58,62,76,84,99,100,102,119,127,137,138,141,143],wouldn:[119,127],wrap:[40,43,60,87,99,103,137],wrapper:[43,51,54,56,60,61,63,64,65,66,67,70,83,87,102,106,142],writabl:69,write:[12,18,27,49,56,81,83,102,103,136,137,141],written:[4,24,35,63,87,89,97,99,100,103],wrong:[47,109],wrote:103,wsgi:[28,139,142],wss:20,www:[15,18,20,24,29,30,42,56,63,69,72,83,85,91,94,96,100,116,118,119,122,123,125,127,128,131,133,141],x11:[59,89,90],x86_64:[57,90,100,102,105,141],x_scl:[83,91],xalt:126,xauth:90,xdg_cache_hom:126,xdg_config_hom:[104,126],xdg_data_dir:91,xdg_data_hom:126,xdmod:[51,106],xdmod_url_warning_messag:20,xdmod_url_warning_message_seconds_after_job_complet:20,xdmod_widget_job:20,xdmod_widget_job_effici:20,xfce4:126,xfce:[21,25,63,90,121,129,138],xfsettingsd:126,xfwm4:126,xhr:98,xml:[2,5,7,17,18,101],xorg:90,xrender:128,xsede:7,xsetroot:126,xstartup:89,xstata:138,xxx:143,xxxx:84,xxxxxxxxxxxx:84,xy001:39,xy125:39,xzf:18,yaml:[4,10,19,20,22,23,24,34,35,39,43,54,56,61,62,63,64,65,66,67,70,82,83,84,91,95,96,100,113,119,127,137],yes:[35,36,52,60],yet:52,yml:[2,4,7,8,10,11,13,16,19,20,22,23,24,28,29,30,31,33,39,40,42,44,51,54,56,61,62,63,64,65,66,67,69,70,71,82,87,88,91,95,96,97,99,100,101,102,103,104,109,111,113,114,117,119,124,125,127,132,141],you:[1,4,5,6,7,10,12,13,15,16,17,18,19,20,21,22,23,24,25,27,28,29,30,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,61,62,63,64,66,67,69,76,81,82,83,84,85,86,87,88,90,91,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,112,113,114,115,116,117,118,119,120,121,122,123,125,126,127,129,130,131,132,133,135,136,137,138,140,141,142],your:[1,2,4,5,7,10,13,14,15,17,20,21,22,23,24,27,28,29,31,35,36,38,39,43,44,45,46,47,48,52,53,54,55,57,61,62,63,66,67,68,69,84,85,86,91,95,96,97,98,99,100,101,102,103,104,109,110,112,113,115,116,117,118,119,121,122,123,125,126,127,130,131,132,133,136,137,140,141,142],yum:[2,4,5,18,19,50,55,57,58,90,96,97,98,99,100,101,102,103,104,134,141],yyi:143,zip:29,zone:[4,58],zoolei:100,zzz:143},titles:["Architecture","2. Authentication","SAML Authentication with Active Directory Federated Services (ADFS) and mod_auth_mellon","CAS","OpenID Connect with Dex","Two Factor Auth using Duo with Keycloak","Other Insecure Options","NSF ACCESS","OpenID Connect","Overview","1. Configure Apache Authentication","3. Configure Logout","2. Setup User Mapping","Shibboleth","OpenID Connect with KeyCloak on RHEL7","4. Add Custom Theme","5. Configure Keycloak with CILogon","2. Configure Keycloak","1. Install Keycloak","3. Configure OnDemand to authenticate with Keycloak","Customizations","Enable Interactive Desktop","2. Add a Cluster","4. Custom Job Submission","3. Modify Form Attributes","1. Software Requirements","Glossary","Adding Google Analytics","App Development","App Sharing","Enabling App Development","Interactive Apps","Adding Additional Information to the session cards","Connection Parameters conn_params","Dynamic Form Widgets","User Form (form.yml.erb)","Form Widgets","Manifest yml files","Setup Interactive Apps","3. Enable Reverse Proxy","2. Modify Cluster Configuration","1. Software Requirements","Sub-Apps and Reconfiguring exsting apps","Job Submission (submit.yml.erb)","Render Template","Connection View","Debugging and Monitoring","Apache httpd tips","Debugging Interactive Apps","Logging","Prometheus Monitoring","Open OnDemand","Install Other Interactive Apps","Installation","Cluster Configuration","3. Secure Apache httpd","Cluster Config Schema v2","1. Install Software","4. 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option"]},objtypes:{"0":"http:get","1":"std:cmdoption"},terms:{"0000ff":[20,84],"007fff":84,"00am":20,"00pm":20,"1000m":20,"10mb":20,"1240x900":89,"150mb":105,"150px":84,"162m":100,"172m":100,"17m":100,"181m":100,"1920x1080":89,"1_all":102,"20g":20,"20gb":105,"20s":50,"24h":4,"24t10":69,"256m":100,"28800s":63,"2f58606":12,"2faccess":7,"2fbatch":[119,127],"2fbatchconnect":[119,127],"2fcilogon":12,"2fidp":[7,11,13],"2flogout":[11,13],"2fondemand":[8,11,19],"2fprofil":[11,13],"2fservera":12,"2ftemplat":[119,127],"2fuser":12,"2fwww":19,"2jhfyh7":20,"2mb":20,"2u5":97,"31m":100,"3rd":56,"40cilogon":12,"40core":137,"40harvard":12,"40osc":12,"41fa":8,"48core":137,"4gi":136,"500mi":136,"50gb":105,"53565a":83,"592m":100,"5b4d93636e0968be920cf409252292d674cc951d":60,"5mb":20,"5tb":125,"63m":100,"64g":63,"64gb":[63,105],"65kb":20,"688x":64,"68m":100,"6mb":20,"716de4ac":84,"73s0qfxc5e_s":63,"87f7":8,"88a4":8,"99m":100,"9f1fe759":84,"boolean":[4,35,36,37,58,62,84,85,88,100,102,103],"break":[10,12,60,83,88,99,100,132,143],"byte":[20,83],"case":[10,12,14,19,20,23,24,27,34,35,39,43,44,45,55,57,62,63,83,85,100,101,119,127,136,137],"class":[17,20,30,35,45,85,88,102,103,142],"const":140,"default":[4,11,12,14,15,16,17,18,19,21,23,25,28,29,34,35,36,37,39,43,44,45,47,49,50,51,53,54,56,57,58,60,61,62,63,65,66,67,76,82,83,84,85,87,88,89,90,91,96,98,99,100,102,104,106,109,113,114,119,127,136],"export":[2,20,33,39,40,43,44,46,59,60,63,66,67,85,88,126,132,134],"final":[10,17,18,35,43,69,95,132],"float":35,"function":[0,1,12,20,39,44,56,70,85,87,91,97,98,102,105,109,126,132,136,140,143],"import":[2,17,23,27,29,40,47,49,60,62,84,90,99,136,137,140,141,142],"long":[35,44,96,99,138],"new":[4,5,10,13,14,19,20,23,27,29,30,36,37,42,44,45,50,53,57,62,83,84,92,93,94,95,97,98,109,116,118,119,122,123,127,131,133,136,137,140,141,142,143],"null":[4,5,11,19,24,35,59,60,62,63,83,84,85,87,99,136,137,141],"public":[4,16,20,55,57,58,84,91],"return":[2,7,11,12,13,20,24,35,39,43,44,56,60,66,72,74,75,80,119,127,140,141,142],"short":[68,100,105],"static":[1,4,20,44,100,111,112],"switch":[100,101,111,126],"throw":[99,111,128],"true":[4,7,8,18,20,24,30,34,35,36,37,43,45,56,60,62,63,67,83,84,85,88,125,136,142],"try":[6,47,49,55,56,60,61,85,87,100,101,102,103,104,109,117,142],"var":[4,12,18,20,23,24,29,30,42,49,58,60,63,66,69,72,79,80,83,85,90,91,94,95,96,97,98,100,101,102,116,117,118,122,123,131,132,133,137,140,141,142],"while":[5,20,34,47,52,84,100,101,106,109,117,138,140],Added:[18,98,104],Adding:[20,28,31,46,51,53,85],And:[24,27,33,39,105,110],Being:62,But:[24,34,35,43,44,109,119,127],CAS:[1,53],DNS:63,For:[2,4,5,10,14,16,18,20,22,23,24,27,29,30,35,36,41,43,44,45,49,50,52,54,55,56,60,62,63,65,69,84,85,88,96,97,98,99,100,102,103,107,113,114,116,119,122,127,131,137,138,140,142,143],Has:100,IDE:[63,109],IPs:85,K8s:[62,136,137],NFS:58,NOT:[20,25,41,44,45,120,129,135],Not:[20,35,83,88],OSes:104,One:[20,49,62,103,106,136,137],PBS:[21,51,54,70,88,100,115,121],QoS:35,TLS:4,That:[22,24,35,40,42,54,100,132],The:[0,1,2,4,7,8,10,11,12,13,16,17,19,20,21,22,23,24,25,26,28,30,32,33,34,35,36,37,39,41,42,43,44,45,47,49,50,51,52,53,54,55,56,57,58,60,61,62,64,65,66,67,69,70,72,75,76,79,80,81,82,83,84,85,86,87,88,89,90,93,94,95,96,97,98,99,100,101,102,103,104,105,107,109,110,111,113,114,115,116,117,118,119,120,121,122,123,125,126,127,128,129,130,131,132,133,135,136,141,142,143],Then:[13,17,18,19,20,30,35,40,110,116,122,131,132],There:[6,20,23,24,29,42,44,45,49,61,62,63,84,85,100,102,103,119,125,127,128,132,140,141],These:[5,9,14,17,20,29,35,37,43,44,45,46,49,51,54,62,63,84,85,86,87,88,89,91,96,102,103,106,107,116,119,122,127,131,137],Tos:51,Use:[8,13,17,20,24,43,47,62,63,82,83,84,85,88,90,105,109,111,112,121,125,138],Used:[4,56,85,91,99],Useful:[85,117],Uses:35,Using:[11,14,60,63,67,85,98],VMs:105,WILL:44,Will:56,With:[20,27,34,42,60,63,109,142],__main__:[60,141],__name__:[60,141],_access:49,_any_:20,_blank:33,_email:20,_erb:20,_err_to_out:60,_error:49,_footer:20,_html:20,_in:60,_limits_:136,_my_cluster_widget:20,_my_new_widget:20,_native_vnc_:45,_requests_:136,_shibsession_:[10,13],_theme:15,_tmux:63,_your_:7,a12ff167dd13:8,aaba6ahbauquag:[20,56],aarch64:105,ab001:39,ab100:39,abaqu:52,abc123:[42,84],abil:[16,20,56,62,63,66,96,98,103],abl:[4,18,19,20,21,24,29,35,42,46,49,53,54,60,62,63,84,85,93,96,99,101,102,109,115,121,130,134,138,140,141],abort:99,about:[20,27,30,39,47,48,49,50,51,55,56,66,99,101,113,114,117,119,127,136,137,141],abov:[7,11,13,20,22,23,24,25,27,32,35,39,41,44,50,62,63,67,84,85,89,91,93,94,95,100,102,103,107,109,113,114,119,120,127,129,135,136,141],abruptli:117,absolut:[20,23,45,63,85,90,132],abus:44,academ:124,acceler:[125,129],accept:[0,4,17,20,27,35,58,101],access:[1,4,11,12,14,16,17,18,19,23,30,32,33,43,44,45,51,53,54,56,57,58,62,69,80,83,84,85,93,94,96,97,100,101,102,103,106,112,116,122,131,134,140,141,142],accesslog:85,accomid:104,accommod:85,accomplish:[10,56,113,114,132,138],accord:[105,126],accordingli:[7,20,47],account:[16,20,23,24,27,34,35,42,43,57,62,69,84,85,87,88,99,125,136,137],accounting_id:[35,43,88,136,137],acess:20,achiev:63,acknowledg:107,acl:[20,103],across:[20,35,49,84,102,113],act:[19,29,42,58,62],action:[5,20,33,45,58,102,106],activ:[1,18,20,44,50,53,54,62,77,79,84,95,97,99,101,140,141,142],activejob:[20,29,91,96],actual:[22,23,35,40,42,47,55,57,59,62,63,69,84,102,105,109,119,126,127,134,142],adapt:[20,21,24,39,40,51,56,58,60,61,62,63,64,65,66,67,68,70,93,94,97,119,125,127,137],adaybujeda:103,add:[1,2,4,5,9,14,18,21,23,29,32,34,35,37,39,43,51,52,53,54,56,60,62,63,66,80,84,85,91,93,96,102,103,104,106,108,111,119,127,128,139,141,142],add_line_to_configmap:136,added:[15,16,20,29,34,35,36,43,45,54,83,84,85,87,91,96,97,98,99,100,101,102,103,128],adding:[10,15,20,29,55,57,62,84,94,96,97,98,99,102,117,119,125,127,132,141],addit:[4,7,20,28,31,34,37,80,83,84,85,89,90,100,132,136,137,143],addition:[20,31,34,85,106],addr:4,address:[12,18,20,49,62,83,85,88,100],adf:[1,53],adjust:[4,17,20,33,50,63,84],admin:[4,15,16,17,18,19,20,29,49,62,98,108,140,141,142],administr:[2,20,35,42,45,47,49,57,67,83,92,100,101,106,140,141,142],adopt:[51,143],advanc:[9,23,51,54,56,141],advantag:[23,43,45,96,98,113,114,115,121,130],advers:128,adversli:83,advertis:[29,53],advic:20,aebruno:103,affect:[20,24,58,69,83,91,94,96,102,103,107],after:[1,12,15,18,19,20,22,24,29,31,33,35,53,54,56,57,60,62,63,69,84,87,88,96,98,100,101,102,103,104,105,109,113,114,116,117,118,122,123,131,133,137,138,140,143],after_initi:[20,30,103],again:[20,32,56,63,69,117],against:[12,20,23,35,102],agarw:103,agent:85,aggreg:[20,50],agnost:[43,113,114],ago:18,ahead:[96,109,117,125,132],aid:97,aim:108,alert:[20,96],alia:[16,20],alias:[20,85],align:33,aliv:[19,47,104],all:[0,4,5,7,12,18,19,20,22,23,24,27,28,29,31,34,35,39,42,43,44,45,46,49,52,53,54,56,57,58,62,63,67,69,71,73,74,75,77,78,81,83,84,85,86,87,88,89,90,91,93,94,95,96,98,99,100,101,103,104,107,109,113,116,118,119,122,123,127,131,132,133,135,136,137,139,140,141,142,143],all_app:20,all_namespac:62,alllow:104,alloc:[7,63,125],allow:[17,22,23,24,29,34,35,36,42,43,45,48,50,51,53,56,58,62,63,70,83,84,85,97,98,99,100,101,102,103,106,112,113,116,119,125,127,132],allow_embed:20,allow_origin:136,allowlist:[51,56,85,103,106],alma:[50,57],almalinux:[50,53,57,104,105],almost:60,alon:[20,35,132],along:[32,85,100,103],alongsid:[97,143],alpha:100,alphabet:[51,91],alphanumer:[44,83],alreadi:[7,17,18,20,35,40,43,44,45,49,86,101,113,114,126,136,137],also:[1,12,14,15,20,23,24,29,30,32,34,35,36,43,44,45,49,50,51,52,54,57,58,60,62,63,64,77,82,83,85,86,87,96,97,98,101,102,103,105,109,113,117,119,125,127,136,137,143],alter:[56,60,83],altern:[7,20,56,62,67,84,128,130],although:[20,29,43,119,127],altogeth:[20,36,103,106],alwai:[12,20,24,29,32,40,62,69,85,88,96,97,98,100,101,102,104],alwasi:136,amazon:[53,57,105],amd64:[50,62],among:57,amount:[35,42,88],amzn2023:57,an0047:29,analysi:[99,101],analyt:[46,51,84,85],analyticsservic:27,analyticsv3:27,ancestor:[20,85],anchor:[20,39,55],ani:[2,10,17,19,20,22,24,27,32,34,35,39,40,42,44,45,49,59,60,62,67,69,72,73,75,81,82,83,84,85,89,90,96,97,98,100,101,102,103,104,105,107,109,117,119,120,124,125,126,127,129,135,136,137,139,140,141],anni:[7,12],annot:62,announc:[51,84,106],announcement_path:84,anonym:[13,17,20],anoth:[29,34,39,43,62,85,88,98,103,105,113,118,123,125,133],another_script:33,ansi:[52,124],ansibl:54,answer:128,anticip:47,any_file_nam:20,anymor:[24,73,102,113,114],anyon:[20,62,83,103,143],anyth:[26,34,35,39,42,63,83,87,88,104,113,124,138],anywher:[20,56,96,103,143],aoaklei:[7,12],apach:[0,1,2,6,8,9,11,12,13,14,20,28,38,46,49,50,51,53,57,58,80,82,83,85,96,98,101,105,106],apache2:[47,57,104],apache_hom:47,api:[4,18,27,31,56,62,87,89,124],apivers:62,app:[16,19,21,22,23,24,25,26,27,33,34,35,37,40,41,43,44,45,46,49,50,51,54,56,58,63,69,73,74,75,80,81,83,84,85,86,87,88,91,92,95,99,104,105,106,108,112,113,114,117,119,120,125,127,129,132,135],app_clean:81,app_config_path:83,app_development_en:30,app_directori:[116,122,131],app_init_url:80,app_jupyt:36,app_list:81,app_nam:[20,72],app_own:72,app_passenger_env:83,app_request_regex:83,app_request_uri:83,app_reset:81,app_root:[30,83],app_token:83,appear:[20,24,29,30,35,45,63,80,96,97,98,100,116,122,128,131,132,140,141,142],append:[23,24,99,119,127],append_path:132,appl:69,appli:[13,19,20,35,43,58,62,63,84,86,87,89,90,102,136],applic:[0,7,18,28,29,30,31,32,33,34,35,36,37,40,42,43,44,45,48,51,56,59,60,62,66,69,72,73,74,75,83,84,85,86,88,91,92,100,101,102,103,104,105,106,121,126,136,137,138,139],appnam:[29,103,140],appreci:1,approach:[11,20,29,62,97,129,137],appropri:[5,15,18,19,20,27,35,39,43,44,49,55,63,91,96,120,129,132,135,140,141],approv:16,apprun:134,apps_path:137,apptain:90,apt:[2,4,55,57,102,104],aptli:44,arbirari:[36,62],arbitrari:[20,30,63,97],architectur:[51,57,93,99,104,106],archiv:50,area:[17,36,106],aren:44,arg:[20,60,62,88,137],arguement:12,argument:[20,23,43,60,66,69,83,85,88,89,90,98,99,113,114,119,127],argv:60,arithmet:[24,43,44],arizona:51,arm64:105,around:[20,40,49,67,103,116,122,131],arrai:[4,23,24,35,36,43,51,83,84,85,87,88,89,101,106,113,114,119,127,136],arrang:20,arrow:101,ascii:99,asid:[119,127],ask:[30,96],aspect:[103,137],assert:62,asset:[20,44,83,91,126],assign:[20,107],assist:14,assoc:141,associ:[33,56,84,96,140,141,142],assum:[2,22,29,30,35,37,43,44,45,55,62,84,96,101,109,112,113,136,137],atkin:99,attach:[20,34,59],attack:39,attempt:[4,6,14,20,24,69,76,85,95,99,103,109,135],attribut:[18,20,21,22,23,31,33,34,42,43,44,45,51,63,86,88,96,100,101,103,111,112,115,119,121,127,130,140],audit2allow:58,audit:[58,106],aug:29,auth:[1,2,6,8,10,13,16,17,18,19,20,53,62,63,85,98,100,101,105],auth_openidc:[19,85],auth_shib:13,authent:[3,4,5,6,7,8,9,11,12,13,14,16,17,18,20,44,45,49,51,53,57,58,63,85,94,98,100,102,103,106,137],authenticated_usernam:12,authentict:104,authnam:19,author:[2,4,13,16,19,29,55,62],authtyp:[2,8,10,13,19,85],authuserfil:19,auto:[24,103,132],auto_account:[35,88,103],auto_group:[35,84,103],auto_groups_filt:84,auto_modul:103,auto_modules_:35,auto_modules_matlab:35,auto_modules_netcdf:35,auto_modules_netcdf_seri:35,auto_modules_r:35,auto_primary_group:[35,103],auto_qo:35,auto_queu:[35,88],auto_supplemental_group:62,autofil:20,autogroup:35,autom:[54,97],automat:[9,31,34,62,84,88,110],avail:[1,20,23,24,27,29,33,34,35,43,44,45,49,50,51,52,56,60,62,63,69,75,84,88,91,96,99,100,101,103,107,113,119,125,127,129,135,137,140,143],averag:105,avoid:[20,30,44,81,85],awai:24,awar:[12,20,35,56,124,129],awesom:45,awk:[7,39,62,87,119,127],aws:61,b972c25d:8,back:[6,16,19,24,33,34,39,44,57,58,84,87,96,99,102,103,109,117],backend:[10,13,19,45,61,85,106,113,114],background:[20,43,44,84,109,111,125,126],backport:51,backtrac:63,backup:[96,98],backward:[20,102,143],bad:60,bak:96,balanc:[51,106],balance1:20,balance2:20,balzana:100,banner:109,bar:[37,51,84,85,88,100,103,106],bart:100,barton:99,base64:62,base:[5,7,11,13,15,16,18,28,29,30,31,42,47,50,56,62,63,83,84,87,89,98,102,103,104,124,129,134,135,137,139,140,141,142],base_path:20,base_slurm_arg:137,base_url:[33,45,136],basearch:134,basedn:4,baselin:62,basenam:20,bash:[7,12,20,39,40,43,44,56,60,62,63,66,69,84,86,87,97,102,119,127,136,137,141],bash_help:87,bash_profil:40,bash_rematch:12,bash_sourc:141,bashrc:[40,66,110],basi:[20,35,101],basic:[6,19,24,33,39,40,43,44,56,66,86,89,90,99,101,103,105,106,113,114,119,137,139],basicconfig:60,batch:[22,23,25,29,31,34,35,37,40,41,44,45,49,51,52,53,56,59,62,63,65,66,69,70,93,95,102,103,106,112,114,115,116,117,119,120,121,122,125,127,129,130,131,132,135],batch_connect:[20,23,33,37,39,40,43,44,45,49,62,63,66,84,86,87,89,90,103,113,114,116,119,122,127,131,137],batchmod:63,baverhei:100,bc_account:[23,24,35,42,88,113,114,117,119,125,127,132],bc_clean_old_dir:84,bc_clean_old_dirs_dai:84,bc_desktop:[20,22,23,24,29,42,96,97],bc_desktop_example_kd:29,bc_dynamic_j:84,bc_email_on_start:[23,24,35,88,113,114,117,119,125,127,132],bc_example_jupyt:[52,116],bc_example_rstudio:[131,132,133,135],bc_js_filepick:[104,124],bc_jupyter_dynpart:52,bc_my_center_matlab:[122,123,124,125,126,127,128],bc_num_hour:[23,24,35,44,88,113,114,117,119,125,127,132,137],bc_num_slot:[23,24,35,113,114,117,119,125,127,132],bc_osc_abaqu:52,bc_osc_ansys_workbench:52,bc_osc_codeserv:52,bc_osc_comsol:52,bc_osc_example_shini:52,bc_osc_jupypt:33,bc_osc_jupyt:52,bc_osc_jupyter_spark:52,bc_osc_matlab:[52,122,126],bc_osc_paraview:52,bc_osc_qgi:52,bc_osc_rstudio_serv:52,bc_osc_stata:52,bc_osc_vmd:52,bc_queue:[23,24,35,43,88,112,113,114,117,119,127,132],bc_relion:52,bc_simple_auto_account:[35,84],bc_vnc_idl:24,bc_vnc_resolut:[24,125],bcff07264b318688c3f4272a9662b13477833373:126,becaus:[7,11,18,20,22,24,29,35,40,43,54,56,61,62,63,66,67,69,84,85,87,88,98,100,101,102,103,111,125,134,136,141],becom:[10,20,97,99,102],been:[2,14,16,20,35,40,43,56,63,64,69,76,96,97,98,99,100,102,104,107,126,128,129,137,138,143],befor:[2,10,19,20,21,23,24,29,31,33,35,43,50,57,59,62,67,83,85,87,90,96,97,98,99,100,101,102,103,104,109,110,115,116,117,120,121,122,129,131,135,136,137,138],before_fil:87,before_script:87,beforehand:85,begin:[2,5,12,20,24,27,109,110,116,117,122,125,131,132,137],behalf:29,behav:[20,51,62,66,103,111,136],behavior:[4,32,34,60,63,84,91,97,98,99,103],behaviour:[20,67,84],behe:4,behind:[1,18,20,85],being:[4,10,13,19,20,35,40,42,46,49,56,60,61,85,87,88,96,98,99,100,102,103,105,109,128,137,143],believ:129,belong:[63,98],below:[0,1,5,16,18,19,20,24,29,30,31,35,36,43,44,45,47,56,62,63,66,67,83,84,85,87,89,90,93,94,96,97,99,101,102,103,111,113,119,126,127,137,141],ben:101,beneath:72,benefici:49,benefit:[29,42,96,98,132,137],best:[24,39,43,47,54,69,96,97,101,102,105],beta:100,better:[20,29,35,85,99,104],between:[4,18,20,29,35,49,55,62,63,72,84,85,97,98,99,100,101,103,111,132],beyond:103,bgohar:30,big:[47,103,137],biggest:96,bin:[4,7,8,12,18,20,29,39,40,43,44,50,56,59,60,61,62,63,64,65,66,67,69,70,82,83,84,86,87,89,90,102,103,104,109,110,128,132,136,137,141],bin_overrid:[51,54,61,64,65,66,67,70],binari:[4,53,54,61,66,67,70,83],bind:[5,17,18,23,63,90,134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d:136,collabor:[29,51],collect:[2,18,30,50,57,83,91,96,97,98,105],colleg:51,colon:[20,97],color:[20,84,89,96,102,109],column:[20,99,102],com:[2,4,5,8,19,20,39,50,52,53,57,60,62,85,100,101,102,104,109,110,116,122,125,126,128,131],combin:[18,47,85],come:[12,24,43,45,57,60,63,68,103,109,143],comfort:[47,57],comm:50,comma:[36,63,85,90,99],command:[9,18,23,29,39,43,47,49,51,53,55,56,61,62,63,64,65,66,67,69,70,71,72,73,74,75,76,77,78,79,80,81,82,83,84,85,87,88,89,90,95,100,101,102,106,117,119,127,128,136,137,138,140,141,142],comment:[7,18,20,52,84,100,106],commit:[106,117,119,127,140,141,142,143],common:[1,12,15,20,24,34,43,44,83,103,104,113,125,138],commonli:[35,132],commun:[4,20,45,52,55,61,63,85,139,143],compar:[20,102],compat:[20,56,97,102,103,137,143],complain:[20,66],complaint:99,complet:[20,24,27,31,44,46,66,69,87,88,89,94,96,98,99,100,105,108],complex:[102,112],compon:[0,20,35,46,92,97,98,99,107],compos:[29,49,51,54,56,60,91,95,97,98,101,106,108],composit:126,compositor:126,comprehens:99,compris:[20,86],comput:[0,20,21,25,26,28,38,39,41,45,49,51,56,62,63,68,90,101,103,105,106,111,115,119,120,121,127,129,130,134,135,138],compute_clust:137,comsol:[45,52],con:42,conbin:85,concat:20,concern:107,conclus:51,concurr:143,conda:136,condition:43,conduct:106,conf:[2,10,13,18,19,47,50,56,63,64,66,67,80,82,83,85,90,96,98,99,137],confer:97,confidenti:17,config:[2,4,5,8,10,11,13,14,16,17,18,22,23,24,29,30,34,35,39,40,42,43,45,51,54,55,57,61,62,63,64,65,66,67,69,70,72,73,74,75,80,82,83,84,85,86,91,95,97,98,101,102,109,113,117,119,125,126,127,132,136,139],config_fil:62,config_properti:20,config_valu:20,configmap:[62,111],configmap_data:136,configmap_filenam:136,configur:[1,3,7,8,9,13,14,15,18,22,23,24,28,30,31,34,38,39,42,44,45,46,47,49,51,53,55,56,57,60,61,64,65,66,67,70,72,73,74,75,80,82,86,87,91,95,97,98,100,104,105,106,108,117,119,125,127,132,136,137,141,143],configvers:126,confirm:[21,39,85,95,107,115,118,121,123,128,133],conflict:[40,44],confnew:102,confus:[0,24,94,109],conn_fil:[87,89],conn_param:[28,31,87,89,102,137],connect:[1,7,11,12,16,17,18,19,21,28,31,34,37,39,40,44,46,47,49,50,51,52,53,54,56,59,62,63,66,77,79,93,98,99,102,103,105,106,115,116,121,122,125,130,131,140,141,142],connector:[4,12,85],consequ:[20,24,83,97,102],consid:[20,29,63,100,101,143],consider:[51,56],consist:[20,35,43,45,83],consol:140,consolid:20,constitut:96,constraint:137,construct:[20,44,45],consumpt:[50,63],contact:[14,17,20,96,107],contain:[18,20,23,28,30,33,43,44,51,52,56,62,66,83,85,86,87,97,98,99,111,117,132,134,143],container:63,container_bindpath:90,container_command:90,container_modul:90,container_path:90,container_start_arg:90,content:[5,19,20,35,43,56,60,62,85,87,88,97,103,117,136,140,141],context:[20,31,33,35,49,51,58,62,87,102,121,126],contian:90,continu:[21,34,63,85,97,98,101,103,107,115,116,117,121,122,128,131],contract:12,contrib:101,contribut:[1,52,100,101,103,105,107],contributor:[100,107],control:[20,23,35,43,45,47,56,61,62,63,64,65,66,67,70,76,84,85,96,97,101,103,113,119,127],conveni:138,convent:[20,28,62,96,139],convers:[20,44],convert:[2,20,24,35,43,44],convieni:12,cooki:[10,13,18,19,97],cool:[37,85],coordin:107,coorespond:62,copi:[4,5,17,20,29,44,52,55,67,83,85,88,95,96,98,102,105,111,115,118,121,123,125,126,130,133,140,141,142],copy_environ:[67,88],cor:20,core:[20,28,34,35,36,42,43,47,88,96,100,105,107,125,137],corner:[5,16,17,109],correct:[1,18,19,20,24,29,63,69,91,109,110,119,126,127],correctli:[12,20,27,35,48,49,103,141],correspond:[12,22,23,24,35,40,43,45,47,53,58,69,70,72,75,80,83,84,85,95,101,113,117,119,125,127,132],could:[1,10,20,29,30,35,39,55,59,62,63,87,97,99,102,109,132,136,143],counter:97,countri:35,coupl:20,cours:30,cover:[20,99,132,137,142],covert8:103,cpu:[20,23,35,47,56,63,101,105,119,124,127,136,137],cpu_limit:136,cpu_request:136,cpuaccount:63,cpuquota:63,crash:[20,49,99,126],crb:57,creat:[0,2,17,18,22,23,27,28,29,30,32,35,43,44,45,47,49,54,56,62,69,80,83,84,94,95,96,97,98,101,103,108,113,114,115,116,121,122,126,128,130,131,132,136,137,140,142,143],create_passwd:44,create_salt_and_sha1:136,created_at:32,creation:[62,84],cred:62,credentail:62,credenti:[16,17,19,27,57,62],criteria:[20,100],critic:[99,106,107,124],crond:63,cronjob:20,crontab:62,crop:22,crt:[4,18,55,62],crucial:107,csc:103,csrf:20,css:[84,102],cuda:34,cuda_vers:34,cuda_visible_devic:59,cumul:20,curl:50,current:[1,15,17,20,25,29,31,34,35,44,51,52,53,56,57,62,63,67,69,75,82,83,84,85,87,93,94,96,102,105,106,109,116,117,122,131,134,143],currentus:20,custim:20,custom:[1,2,10,12,14,16,21,22,24,28,31,33,34,43,47,51,58,60,63,83,84,85,91,94,95,96,97,99,100,101,106,109,111,115,121,130],custom_app:96,custom_config:113,custom_css_fil:[20,84],custom_env:97,custom_javascript_fil:[84,104],custom_location_direct:85,custom_map:12,custom_nam:97,custom_pag:[20,84],custom_pages_guid:20,custom_queu:[113,114],custom_variable_on:33,custom_variable_two:33,custom_vhost_direct:85,customapp:29,customlog:18,cwd:[60,99],cyberinfrastructur:7,cybersecur:107,cycl:143,d3d3d3:126,daemon:[18,44,50,126],daemons_use_tti:58,dai:[27,51,84,106,107],daili:20,dalli:102,dan:99,danger:[20,96],dark:[20,84],dasbhoard:62,dashboard:[11,16,19,22,24,26,28,30,35,37,44,45,46,49,51,54,56,60,62,69,72,83,84,85,87,91,95,98,103,104,106,110,113,116,118,122,123,131,133,140,141,142],dashboard_header_img_logo:[20,84],dashboard_layout:[20,84],dashboard_logo:[20,84],dashboard_logo_height:[20,84],dashboard_titl:[20,84],data:[12,18,20,27,33,34,35,44,46,60,62,84,87,94,98,99,101,102,103,104,106,136],databas:[14,63,67],dataroot:104,date:[20,55,61,87,102],date_field:35,davidmonro:103,dbu:63,deb:[57,102,104,143],debian:[47,53,55,57,105],debug:[9,20,22,43,45,47,49,51,57,63,88,94,95,117,126,136,137],debuggin:49,decid:24,declar:[83,97],decleari:83,decod:[12,60],decreas:[47,85,102],dedic:[26,28],def:[60,86,87,141],defens:5,defin:[4,17,18,20,23,24,27,31,33,42,43,44,54,59,62,63,69,82,83,84,85,88,91,97,101,113,114,117,119,125,127,132,134,137],definit:[20,24,43,63,84,86,100],degrad:47,degre:143,delet:[5,10,20,47,53,62,63,73,84,98,99,102],delimit:[20,63,97,99],deliveri:20,delivery_method:20,delivery_set:20,delm:7,demo:85,demonstr:[17,20,60],deni:[20,83],denial:58,denot:[72,75],depart:20,depend:[5,20,23,29,35,45,47,49,50,51,52,53,55,96,97,98,101,113,114,119,127,132,134,135,139,140,141],deploi:[8,11,13,29,31,35,43,44,45,52,73,74,75,83,91,94,97,98,111,115,121,130],deploy:[2,5,20,29,46,53,55,62,83,85,96,106,118,123,133],deprec:[20,83,102,129,143],depth:89,deriv:97,describ:[20,23,27,31,34,35,37,39,43,44,54,56,62,66,83,85,116,119,122,127,128,131,136,137,140,141],descript:[18,20,24,35,37,52,140,141,142],design:63,desir:[16,20,49,84,102,113,135],desk1:20,desk:20,desktop:[20,22,23,25,29,41,51,56,63,89,94,95,97,98,99,102,103,105,111,121,126,129],despit:[20,97],destin:20,destination_path:[136,137],detail:[0,1,2,7,9,11,12,27,35,44,45,54,56,58,59,62,72,79,82,83,84,85,92,93,94,106,107,116,117,119,122,127,131,136,137,138,140,141,142],detect:[63,99],determin:[4,35,43,44,56,62,83,85,87,89,107,119,127,136,137],dev:[5,14,17,19,20,29,30,35,43,44,45,59,60,62,63,72,80,83,90,95,108,113,114,116,117,118,119,122,123,124,125,126,127,128,131,132,133,135,136,137,140,141,142],dev_work:[109,110],devel:18,develop:[6,18,20,29,31,33,35,45,51,52,57,60,62,63,83,85,94,95,96,98,99,100,101,102,103,104,105,111,112,116,122,126,131,136,137,139,140,141,143],devgrp:30,dex:[1,8,9,51,53,58,85,102,104,106],dex_uri:[4,85,103],dexidp:4,diagram:[44,51],dictionari:[20,84],did:[35,43,99],didn:[35,62],dies:117,dietz:99,diff:[95,96,97,98,99],differ:[3,14,20,23,24,34,35,40,43,47,61,62,64,65,66,67,70,82,83,84,85,96,97,98,100,103,109,110,119,124,125,127],different_select_clust:35,differenti:62,difficult:[53,57,102],digit:51,dimens:[27,35],dimension1:27,dimension3:27,dimension6:27,dir:[4,20,33,84,136],direct:[1,10,11,17,18,19,20,34,40,47,54,55,69,85,93,100,101,107,112,137],directli:[2,4,10,12,20,23,24,32,35,36,42,43,45,47,83,91,93,97,100,101,102,103,108],directori:[1,15,18,22,23,29,30,31,35,36,37,43,44,45,49,51,53,54,58,61,63,64,66,69,72,80,81,83,84,85,87,88,91,95,98,99,100,101,104,106,108,110,116,117,118,122,123,126,131,132,133,134,136,137,138,140,141,142],dirnam:[20,141],disabel:20,disabeled_shel:83,disabl:[4,18,19,23,35,36,39,51,56,58,62,83,84,85,106,126,128,135],disable_bc_shel:84,disable_bundle_user_config:83,disable_check_xsrf:136,disable_dashboard_logo:84,disable_log:85,disable_safari_basic_auth_warn:101,disabled_shel:83,disablerepo:98,disclos:103,disclosur:106,discourag:[6,67],discours:[3,14,17,20,51,52,58,97,98,107],discov:[20,85,132],discoveri:85,discuss:[9,12,20,24,35,119,127],discussus:12,disk:[51,58,60,83,97,106,116,122,131],dispar:7,displai:[11,16,20,24,31,32,36,43,44,45,55,56,59,62,73,76,77,79,81,82,83,84,85,89,95,97,98,99,100,101,102,104,125,126,128,138,140,141,142],disregard:100,disrupt:100,distant:61,distinct:[43,63,103],distinguish:109,distribut:[12,18,20,63],div:[20,102],dnf:[4,50,57,90,102,103,104],doc:[2,4,15,18,20,55,88,100,128],docker:[0,5,62,90,136,137],dockerfil:[53,57],documen:98,document:[4,7,8,12,13,15,17,20,23,27,30,43,45,47,51,55,56,62,69,71,84,85,88,94,96,99,101,102,106,107,112,113,114,136,137,140,141,142,143],dodeploi:5,doe:[1,10,20,23,27,29,30,34,35,38,44,45,55,56,58,60,61,63,84,97,99,104,109,116,122,125,126,128,129,131,134,136,142],doesn:[18,20,30,34,45,69,80,83,87,97,102,113,114],doing:[12,18,59,63,83,96,136],domain:[0,20,39,79,83,84,85,88,139],don:[14,18,19,20,23,24,27,34,35,39,52,53,57,73,82,83,84,85,93,94,100,109,136],donat:97,done:[20,22,23,29,40,44,58,60,62,66,87,96,101,102,109,114,118,119,123,124,126,127,133,136,138,141],dot:[0,12,63,89],doubl:83,down:[9,16,20,49,62,96,109,110,112,113,114],downgrad:98,download:[2,7,18,50,51,84,103,106,130],download_en:84,downtim:20,dpi:89,dpkg:102,dport:[4,58],drastic:69,draw:0,drawer:105,drink:126,driven:[35,143],drmaa:66,drop:[16,20,112,113,114],dropdown:[5,16,20,22,30,35,84,96,97,98,99,100,101,102,109,116,118,122,123,131,133],drwx:80,drwxr:[29,80],dsun:128,due:[97,100,101],duo:[1,53],duo_java:5,duosecur:5,duoweb:5,duplic:20,durat:[62,89],dure:[18,20,63,82,85,87,89,96,97],dynam:[20,23,27,28,31,32,35,37,69,84,85,95,96,102,124],each:[0,12,15,20,22,24,27,29,31,35,42,43,45,54,62,63,67,83,84,93,94,95,96,97,98,102,104,105,109,113,116,122,125,131,137],each_pair:137,eager:99,earli:[44,51,143],earlier:[96,120],easi:102,easier:[15,16,95],easiest:[20,35],easili:[20,96],echo:[7,12,44,59,62,69,87,126],ecmascript:105,edg:[20,99,105],edit:[2,5,10,13,17,18,19,20,23,24,27,29,53,62,69,83,84,97,100,103,111,113,117,121,125,128,132,138,139],editor:[20,27,29,93,94,95,96,97,98,99,102,109,117,125,132],edt:[12,18],edu:[4,11,12,13,14,16,17,18,19,20,29,30,39,40,43,45,52,53,54,55,56,57,61,62,63,64,65,66,67,69,70,72,80,84,85,88,90,96,97,98,99,100,101,102,103,104,113,116,118,122,123,131,133,137],edu_access_ssl:18,edu_error_ssl:18,educ:51,effect:[10,19,20,29,30,39,53,96,97,102,107,109,113],effici:[20,101],efranz:[29,30,140,141,142],eight:20,either:[4,14,20,23,34,35,49,56,62,63,66,85,86,97,98,100,102,103,113,114],el6:[97,98],el7:[2,96,97,98,100,103,104,105],el8:[2,57,90,103,104],el8serv:90,el9:[57,87,104],elaps:[20,99],element:[20,31,35,66,102,112,113,114,117,125,132],elev:63,elisa:99,ellips:18,els:[7,12,19,29,43,47,62,103,126,137],elsewher:20,elsif:137,email:[7,8,12,16,17,20,23,29,35,58,83,85,88,107,125],email_field:[20,35],email_on_start:[35,43,88],email_on_termin:88,emailattr:4,emb:[18,20,23,43,45,99,113,119,127],embed:[20,23,32,43,44,45,97,113,119,127],emphas:106,emploi:[62,102],empti:[10,12,24,27,35,62,84,85,87,88,99,124],emul:63,en_u:90,enabl:[2,4,10,11,16,17,18,19,20,23,28,34,35,38,44,45,51,53,58,62,63,64,66,69,83,84,85,93,95,98,100,101,102,103,104,108,109,121,129,137],enable_cuda_vers:34,enable_gpu:34,enable_native_vnc:45,enable_starttls_auto:20,encod:[12,81],encount:[20,49,55,66],encourag:106,encrypt:[55,97,106],end:[0,12,14,18,20,27,30,39,43,44,63,69,84,87,96,99,102,103,109,113,126,137,138,142,143],end_dat:27,endpoint:[16,62,84,104],endpoint_path:84,enforc:[20,85],engag:107,engin:[51,54,62,97,100],english:20,enhanc:[106,107],enough:[12,26,102,128],ensur:[2,5,10,20,29,33,40,43,49,50,55,60,62,63,66,67,69,98,100,101,103,106,107,109,110,132,134,138,141],enter:[20,61,109,116,122,131],entir:[31,35,43,86,125,141],entiti:7,entitl:100,entri:[12,20,24,35,49,62,63,85,101,104],entrypoint:[140,141],enumer:35,env:[4,16,20,29,30,35,45,60,62,83,84,85,88,91,96,97,100,101,102,108,136,137,140,141],envdir:64,enviorn:67,enviro:84,environ:[7,8,19,20,24,25,29,30,33,35,40,44,45,50,51,56,60,62,67,69,71,80,81,83,84,85,87,88,89,90,96,99,100,101,102,103,105,106,109,120,126,129,132,134,135,136,137,139,140,142],environment:99,envvar:47,eof:[18,50,62],eot:126,epel:[57,90,97,98,102],equal:20,equip:108,equival:[24,35,119,127],equvial:20,erb:[18,20,22,23,24,28,31,33,45,51,62,71,82,83,84,87,88,89,96,99,101,103,113,114,117,119,124,125,126,127,128,132,136,137,138],eric:29,error:[12,39,48,49,51,55,60,61,66,69,80,83,85,87,88,89,95,100,106,111,117,121],error_path:[63,88],errorlog:[18,85],errorreturncod:60,erubi:[23,32,43,44,45,101,113,119,127],esac:62,escal:[22,49],escap:[19,33,81],escel:20,especi:55,ess:[36,137],essenti:[62,84,106,109],est:[12,20],etc:[2,4,7,8,10,11,12,13,16,18,19,20,22,23,24,26,29,30,35,39,40,42,43,45,47,49,50,54,55,56,58,61,62,63,64,65,66,67,69,70,82,83,84,85,86,88,90,91,95,97,98,99,100,101,102,103,113,117,119,125,127,132,136,137],evalu:99,even:[20,29,30,34,63,82,102,106,136,138,143],event:[20,47,102],eventu:20,ever:48,everi:[0,12,18,20,29,34,35,37,61,62,69,84,85,89,101,104,140,141,142,143],everyon:[28,29],everyth:[0,29,34,35,42],everytim:113,exact:20,exactli:35,exampl:[3,4,7,8,10,11,13,14,16,18,19,20,23,24,27,30,31,34,36,40,42,44,47,49,50,51,54,55,58,59,62,63,69,81,82,83,84,85,87,88,89,90,91,93,96,97,99,100,101,102,103,109,113,114,116,119,122,126,127,129,131,134,135,136,137,138,140,141,143],example_clust:40,example_templ:20,excel:107,except:[20,60,88,96,99,104,128,132],exception:99,exclud:[29,100],exclus:137,exec:[20,63,65,87,134,141],execstart:18,execut:[5,12,20,28,31,44,56,60,62,63,65,72,76,77,80,82,87,98,113,134,137,141],execv:[49,69,117],exempt:97,exercis:[53,57],exhaust:105,exisit:84,exist:[16,20,42,44,69,73,80,84,85,87,91,96,97,101,102,113,114,116,122,124,131,138,142],exit:[12,44,60,62,82,99,126],exit_cod:60,exitcod:82,expand:[20,96],expect:[20,35,45,53,62,63,83,88,90,97,98,113,114],experi:[29,58,105,128,138],experienc:44,experiment:[20,69],expir:[4,61,62],expiri:[4,61],explain:[19,20,119,127],explan:[97,98],explicitli:[20,30,35,56,85,101,102,132],explor:[20,63,117,124],expos:[4,19],expr:[10,13],express:[9,10,13,20,35,39,61,83,85,102,113,140],exst:[28,31],extend:[15,20,103],extens:[18,20,23,43,44,45,51,54,56,100,119,127],extern:[4,16,29,51,96,128,140,141,142],extra:[20,35,37,88,89,96,102,141],extra_arg:89,extra_jupyter_arg:[113,114,117,119,127],extract:[27,61,62,101],eye:45,facil:[20,59],facilit:[20,63],facl:[29,84,103],facl_domain:84,fact:[27,42,44,62],factor:[1,53,62,98,100,105],fail:[12,22,39,48,49,63,69,85,100,101,119,127],failu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_uri:85,public_url:[20,84],publicli:91,publish:[7,139],pull:[62,100,107,109,110,134,143],pun:[0,11,12,19,20,26,27,29,49,50,51,58,60,62,67,71,72,75,77,78,79,81,83,85,95,96,100,102,103,104,105,106,109,110,116,117,122,131,140],pun_access_log_path:83,pun_app_config:83,pun_config_path:83,pun_custom_env:[20,83,84,91,97,99,100,101],pun_custom_env_declar:[83,91,97],pun_error_log_path:83,pun_log_format:83,pun_max_retri:85,pun_pid_path:83,pun_pre_hook_export:85,pun_pre_hook_root_cmd:85,pun_secret_key_base_path:83,pun_sendfile_root:83,pun_sendfile_uri:83,pun_socket_path:83,pun_socket_root:85,pun_stage_cmd:85,pun_tmp_root:83,pun_uri:85,punctuat:99,puppet:[54,96],purdu:99,pure:[56,110],purg:[39,40,44,120,129,135],purpos:[20,29,45,63,84,101,126,136,137,143],push:[140,141,142],put:[18,20,23,62,96,100,138],pwd:[5,29,44,126,141],pwd_cfg:136,python36:60,python3:[90,141],python:[28,44,51,83,102,103,113,114,117,119,120,127,129,136,139],python_hello_world:141,python_vers:35,pythonpath:91,pzs0001:43,pzs0002:20,pzs0562:[140,141,142],pzs0714:[29,63],qdel:[65,66],qgi:52,qhold:[65,66],qos:101,qrl:[65,66],qselect:65,qstat:[65,66,101],qsub:[23,43,49,56,65,66,69,70,99,100,119,127],qsub_wrapp:66,qualiti:[35,101],quantifi:105,queri:[7,19,20,46,62,98,102],question:[6,63,96,97,98],queu:[48,66,69],queue1:[113,114],queue2:[113,114],queue:[20,23,24,35,43,51,63,69,88,94,99,111,113,114],queue_nam:[35,43,88,113,114],quick:[21,31,38,56,67,81,82,96,115,121,130],quiet:63,quit:[6,62,76,83],quot:[84,99],quota1:20,quota2:20,quota:[51,106,140,141,142],quota_additional_messag:20,quota_reload_messag:20,r2015b:125,r2016b:125,r2017a:125,r2018a:125,r2018b:125,rack:[28,139],radio:36,radio_button:[35,36],rail:[20,30,69,91,97,98,100,103,139],rails_env:69,rais:[20,69],rake:[54,57,69,96],ram:[63,105,125],ran:[20,63,90],rand:[18,19],random:[19,44],randomli:4,rang:[20,44,84,105,112],range_field:35,rational:102,raw:62,rc8:143,rclone:[20,84,103],rdynam:63,reach:[17,32,62,101,103,105,143],read:[4,7,12,18,20,22,30,35,39,44,55,60,62,63,66,67,81,84,85,88,89,98,100,102,103,113,114,119,127,136],read_onli:17,read_timeout:20,readabl:[4,8,19,20,29,62],reader:[6,53,57,142],readi:[29,109],readm:[52,97],readonli:20,real:[60,83,88,143],realiz:29,realli:[6,24,42,63,103],realm:[5,14,15,16,18,19,20,62],reapaft:62,reaper:62,reapnamespac:62,rearrang:[20,84],reason:[20,29,54,63],rebuild:[63,97,98,109,110],rebuilt:[97,102,103,104],recalcul:47,receipt:107,receiv:[16,24,39,107],recent:20,recently_used_app:[20,103],recip:63,recogn:[20,141,142],recognzi:140,recom:64,recommend:[4,8,14,18,20,22,23,29,30,40,43,44,45,55,56,62,81,82,83,84,85,95,98,100,101,104,106,109,117,119,120,127,129,135],reconfigur:[20,28,31,53,61,104],record:99,red:[20,35],redcarpet:99,redefin:24,redhat:[53,57,100,102,105],redir:80,redirect:[4,11,13,14,16,17,18,19,55,60,80,102],redirecturi:4,rediscov:63,reduc:125,ref:88,refer:[1,12,20,27,34,43,45,51,56,62,81,82,84,85,86,88,93,94,103,104,126,128,136,137],referenc:[20,34,35,56,62,103],reflect:[20,100],refrain:43,refresh:[24,62,109,113,114],regard:[3,11,20,35],regardig:20,regardless:[32,34,84],regener:[11,20],regex:[8,12,61],regist:[7,14,85],register_root:85,register_uri:85,registr:[1,16],registri:137,registry_docker_config_json:62,registry_password:62,registry_us:62,regular:[10,12,13,20,30,35,39,61,67,83,85,100,102,143],regularis:52,regularli:[42,106],reguluar:9,reinforc:106,reinstal:[97,98],rel:[20,23,45,83,84,85],relat:[3,20,49,101,102,103,128,143],releas:[50,51,57,62,65,90,107,143],relev:[20,35,49,51,62,79,102,143],reli:[12,45,56,62,85,97,98,100,102],reliabl:[99,126],relion:52,reload:[4,18,20,50,58,76,83,140,141,142],remain:[91,100,101],remedi:[61,138],rememb:[13,15,17,20,24,97],remot:[9,51,55,58,60,63,84,106,116,122,131,140,141,142],remote_addr:83,remote_files_en:84,remote_files_valid:84,remote_us:[12,19,83,85],remov:[10,14,15,20,21,29,40,60,63,66,67,73,84,88,90,91,94,97,98,100,101,102,103,113,114,143],renam:[35,44,94,113,140],render:[20,28,29,31,33,35,43,45,49,56,59,62,82,84,101,102,137],render_template_notes_as_markdown:99,reopen:[76,83],repackag:98,repeat:[20,35],replac:[10,15,16,18,19,20,28,30,35,47,50,54,55,56,60,61,62,64,65,66,67,69,70,82,85,91,98,101,102,103,104,112,113,114,116,117,119,122,125,126,127,131,132],repli:20,replic:0,repo:[4,5,8,19,29,57,97,102,103,109,110,116,122,131,140,141,142],report:[20,27,66,84,99,101,105,106],repositori:[29,42,52,53,96,97,98,105,107,143],repres:36,req:[10,13,140],request:[10,12,14,18,19,20,23,27,34,35,39,42,43,44,45,47,51,59,72,75,80,83,84,85,88,96,98,102,103,107,111,119,124,125,126,127,140,141,143],requesthead:[10,13,18,19],requir:[2,4,5,8,10,12,13,19,20,21,22,24,29,31,34,35,36,37,38,44,50,51,54,55,56,58,60,61,62,63,64,67,69,81,83,85,87,90,100,101,109,111,113,115,116,117,121,122,124,125,126,130,131,132,134,137,138,140,141,142],require_rel:142,requiresess:[10,13],requri:141,rerun:63,rerunn:88,res:140,research:[7,51,101],reserv:[63,88],reservation_id:88,reset:[102,103,104,140,141,142],resid:[10,42,54,69,83,85],resiz:[101,111,128],resolut:[35,36,125],resolution_field:[35,36],resolv:[20,55,63,97,103],resourc:[0,5,7,15,18,20,22,23,26,35,43,47,50,51,53,54,56,61,62,64,65,66,67,68,69,70,84,85,96,99,100,103,106,111,113,114,115,121,130,137],resource_id:20,resource_mgr:20,respawn:126,respect:[20,23,31,43,80],respond:[34,85],respons:[12,20,24,27,45,47,56,57,94,98,107,117,119,125,127,132,141],rest:[18,30,63],restart:[2,4,10,18,19,20,29,39,46,50,53,72,96,101,102,103,104,109,113,140,141,142],restart_polici:[136,137],restor:[20,56,98,126],restrict:[10,12,18,20,29,30,62,83,85,97,112],restructur:103,result:[20,27,29,43,49,60,63,69,85,96,97,98,100,103],retain:[45,97],retriev:[2,98],reus:[18,20],reusabl:136,revers:[0,1,31,38,51,72,75],revert:[30,97,98],review:[48,53,57,106],revisit:69,revok:63,rewrit:85,rewriteengin:85,rewritten:[100,102],rex:12,rhel7:[1,53,98,137],rhel:[8,47,50,53,55,57,63,69,82,97,98,102,103,104,137],rice:100,right:[17,20,29,35,36,40,44,60,69,84,102,109,113,114,116,122,131,134],risk:[39,85],rnode:[39,45,52,85],rnode_uri:[39,85],road:49,robin:63,robinkar:103,robust:[20,106,132],rocki:[8,47,50,57,102,103,104,105],rockylinux:[53,57,90],role:[27,37,54,62,107,137],rolebind:62,root:[4,8,10,17,18,19,20,22,23,29,33,34,35,37,43,44,45,49,50,57,62,63,66,69,72,80,81,83,85,90,91,96,98,100,106,109,117,118,119,123,125,126,127,132,133,140,142],root_uri:85,rotat:62,round:63,roundrobin:63,rout:[47,140,141,142],router:[20,140],row:[20,27,101,102],rpm:[8,46,57,65,82,85,90,97,98,99,100,101,102,103,104,105,135,143],rpmsave:98,rserver:[132,134],rss:[20,84],rstudio:[20,39,45,49,51,52,54,85,88,93,96,105,111,132,134,135],rstudio_contain:132,rstudio_group:20,rstudio_guid:20,rstudio_launcher_centos7:132,rstudio_server_imag:132,rubi:[0,20,23,24,27,28,30,32,34,35,43,44,45,50,51,57,83,88,91,96,98,99,100,103,104,113,119,127,137,139,143],ruby22:[97,98],ruby24:[69,100],ruby25:[83,102],ruby27:[102,103],rubydoc:[119,127],rubygem:142,rubylib:91,rule:[13,18,35,63,85],run:[0,3,4,5,7,12,14,17,18,20,21,23,25,26,28,29,30,33,35,38,39,40,41,44,45,49,50,55,56,57,58,59,61,62,63,64,66,67,69,76,78,79,80,81,82,83,85,87,89,90,91,98,101,105,106,109,110,115,116,117,119,120,122,125,127,128,129,130,131,134,135,136,137,141,142],run_as_group:136,run_as_us:136,run_fil:87,run_owens_script:44,run_remote_sbatch:60,run_script:87,runasgroup:62,runasnonroot:62,runasus:62,runscript:134,runtim:[33,125,129,132,134,141],sacrific:99,safari:105,safe:[45,98,101],safer:56,safeti:[20,107],sai:[20,34,42],salt:136,same:[14,18,20,27,29,31,42,45,56,62,63,64,67,96,98,100,102,103,109,126,134,136,137],saml:[1,7,53],sampl:20,sandbox:[29,35,43,44,45,95,109,110,113,114,116,117,118,122,123,131,133,140,141],sanit:[9,124],satisfi:[8,13,57],saumyabhushan:103,save:[4,5,16,17,18,20,58,62],save_passwd_as_secret:136,sbatch:[23,43,49,56,60,67,100,119,127],sbatch_wrapp:56,sbin:[4,10,13,18,19,20,39,47,50,82,83,85,91,99,100,101,102,103,104],scan:12,scancel:[56,67],scenario:[43,83,103],scgi_temp:80,schedul:[20,24,26,32,35,49,54,56,60,61,62,63,68,84,88,96,100,137],schema:[20,51,54],scheme:[20,35,42,84,100,143],scienc:[7,103],scipi:136,scl:[30,69,83,91,97,100],scl_sourc:98,scontrol:[56,67],scontrol_wrapp:56,scope:[8,13,16,18],scrape:50,scrape_interv:50,scrape_timeout:50,scratch:[20,36,136,137],screen0:126,screen:[29,94],screeshot:20,script:[23,29,31,35,40,42,51,54,56,62,63,66,67,82,83,84,86,87,89,91,97,98,99,101,102,106,109,111,113,114,117,119,121,124,125,127,128,132,134,135,136,137,138,140,141],script_dir:141,script_fil:[43,87],script_pid:66,script_wrapp:[39,40,56,66,67,87],scroll:17,scrub:87,seamless:143,search:[7,10,20,49,83,102],search_field:35,second:[20,35,43,44,62,63,69,83,87,88,89,99,104,113,114,125],secondari:[128,138],secondli:[20,27],secret:[4,10,16,17,19,62,83,136],secret_key_bas:83,section:[1,9,20,23,24,35,42,62,88,96,98,101,103,106,107,113,114,117,119,127,136,137,141],secur:[2,5,7,8,12,17,20,39,44,51,53,57,62,63,85,90,92,143],security_csp_frame_ancestor:85,security_strict_transport:85,securitycontext:62,see:[0,2,3,4,7,11,12,15,18,19,20,22,23,24,27,29,30,34,35,39,42,45,47,48,49,52,53,55,56,57,58,61,62,63,84,85,86,87,93,94,96,97,98,99,100,101,102,103,104,107,108,109,110,113,114,116,117,118,119,122,123,125,126,127,131,133,136,140,141],seen:[20,35,49,62,63,101,143],segment:20,select:[5,15,16,17,23,24,29,31,35,36,60,62,63,84,88,95,96,101,102,112,113,114,119,124,125,126,127,137,138],selector:36,self:[5,18,20],selinux:[51,53,57,102,104],send:[20,23,27,39,57,58,60,76,83,85,88,89,140],send_256_colors_to_remot:126,sendenv:20,sendfil:83,sens:[34,50,119,125,127],sensit:[18,35],sent:[12,13,16,20,35,45,60,83],sentenc:20,sep:18,separ:[11,12,14,20,24,34,96,99,102,104],seper:[20,85,90,104],septemb:20,sequenc:[0,91,97],seri:[20,103],serial:[7,8,35,85],serivc:62,serv:[0,1,18,20,29,47,57,83,85,96,100,102,105,137,140,141],server:[0,1,4,8,10,11,12,13,14,19,20,23,26,28,31,33,35,39,40,41,44,45,52,53,54,55,57,58,61,62,65,67,69,70,72,75,80,82,83,85,86,93,96,97,106,109,113,115,117,119,120,124,125,127,129,130,132,134,135,136,137,139,140,141,142],server_alias:85,server_develop:15,serveralia:85,serverdir:64,serverlimit:47,servernam:[4,8,18,47,50,55,57,85],serverroot:85,servic:[1,3,7,18,20,27,35,39,46,50,51,53,62,63,82,100,101,102,103,104,106,135],serviceaccount:62,serviv:19,sescur:62,session:[9,13,19,21,22,28,31,33,39,46,48,51,56,59,63,67,72,79,84,85,93,99,101,102,104,106,117,126,140,141,142],session_context:[116,122,131],session_descript:20,session_id:[20,44,102],set:[1,4,5,7,11,12,13,15,17,18,19,21,22,24,27,29,30,31,33,35,36,38,40,42,44,51,56,57,58,59,60,61,62,63,65,66,67,70,83,84,85,87,88,89,91,96,98,101,102,103,106,108,110,113,125,126,128,132,136,138,140,143],set_host:[39,87,119,127],setenv:[85,98,132],setsebool:[58,100],setsid:59,setup:[1,5,9,16,17,20,21,27,31,39,51,53,57,62,63,67,85,106,109,110,111,112,115,121,130,137,140,141],setup_env:132,sever:[3,20,35,58,62,63,83,98,100,102,103,107,108],sge:[51,66,101],sge_root:66,sh_jupyt:52,sh_ood:52,sh_rstudio:52,sh_tensorboard:52,sha1:136,shade:84,shanghai:[52,101],shape:[34,107],share:[4,20,28,51,55,83,126,137],shawn:100,shebang:[60,87,100],shelf:63,shell:[26,28,29,30,43,51,54,56,58,61,63,67,81,83,84,85,87,88,94,95,98,105,106,108,109,140,141,142],shell_path:88,shib:13,shibboleth:[1,10,11,53,85],shibcompatvalidus:13,shibrequestset:[10,13],shibsess:10,shift:62,shini:52,shinyusr:29,ship:[4,42,62,102,103,104],shortcut:[51,100,102,103,106],shorter:84,should:[7,10,12,16,18,19,20,21,22,23,24,29,35,37,45,46,47,49,50,52,53,55,56,57,58,60,61,62,63,65,67,72,75,83,84,85,87,88,89,91,96,97,98,100,101,102,103,109,110,113,116,117,122,124,125,126,131,137,140,141,143],shouldn:87,show:[14,18,20,24,29,30,34,35,36,46,49,56,60,79,82,83,84,93,94,98,102,103,110,124,136],show_all_apps_link:[20,84],show_fil:36,show_hidden:36,shown:[20,34,35,36,37,84,99,103,119,127],shub:134,shut:62,side:[20,84,85,97,124,125],sif:[23,63,87,90],sign:[1,18,20,53,55],signal:[76,83,85],significantli:[18,29,110],signingkei:4,simg:[132,134],similar:[20,29,30,47,50,59,63,66,96,98,101,107,136],similarli:[53,102,119,127],simpl:[12,19,20,35,39,40,44,45,84,101,136,140],simplehttpserv:44,simpler:[12,20,34,35,56,85],simplest:[12,18,20,24,35,43,45,54,62,114,119,127,142],simpli:[20,24,42,56,61,63,100,101,103,109,140,141],simplic:134,simplifi:[14,20,39],simul:20,simultan:47,sinatra:139,sinc:[7,12,17,18,19,20,23,24,35,39,56,62,85,91,96,97,98,104,105,119,127],singl:[1,16,20,23,35,36,45,63,66,69,84,85,101,102,119,127,136,137],singuarl:134,singular:[0,63,87,90,98,111,130,132,135],singularity_bin:63,singularity_bindpath:[23,63,132],singularity_contain:[23,63],singularity_imag:63,singularityenv_ld_library_path:132,singularityenv_path:132,singulartity_bind_path:88,sinit:63,sit:[4,103],site:[0,4,7,12,14,15,20,22,26,29,34,35,39,42,45,50,51,52,53,55,56,62,63,67,68,85,96,97,98,99,100,101,102,103,104,105,125,129,136,137,143],site_mapp:85,site_timeout:63,size:[24,34,35,44,51,83,89,102,105,106],sjtu:[52,101],skip:[20,72,76,77,80,82,136,137],sleep:[59,126,138],slightli:[29,84,102],slower:20,slurm:[20,21,35,43,51,53,54,56,58,59,60,88,100,111,113,114,115,121],slurm_arg:137,slurm_export_env:67,slurm_job_gr:59,slurm_localid:59,small:[27,34,43,45,102],small_clust:43,smaller:[20,94],smallest:87,smtp:[20,58],sock:[79,80,83],socket:[0,18,39,79,83,85,99,137,139],soft:136,softar:98,softwar:[0,2,4,18,21,29,30,38,51,53,83,91,96,97,98,103,104,111,115,117,121,125,130,132],solid:126,solut:[17,45,83,112,128],solv:[60,128],some:[0,1,8,18,20,22,23,24,30,32,34,35,41,42,43,44,45,48,50,55,57,58,59,62,66,83,84,85,88,95,96,97,98,100,101,102,103,104,106,108,109,119,125,127,136,137,138,141],someelementid:102,someth:[12,20,23,24,27,62,63,69,87,89,109,119,125,127,136,140],sometim:110,son:66,soon:[15,63,88,96,107],sophist:102,sophstic:20,sort:[27,46],sortabl:102,sourc:[1,24,29,44,46,51,52,55,66,69,85,87,91,98,99,136,141,142],space:[20,56,103,109,110,136],spam:20,spark:52,spassword:89,spawn:137,spec:[20,53,56,57,111],special:[20,23,36,37,42,43,63,81,92,98,116,122,131],specif:[0,4,7,10,17,20,24,27,29,30,35,38,42,43,44,50,52,56,58,62,83,84,85,88,89,91,96,97,98,103,104,106,107,113,114,125,136,137],specifc:126,specifi:[19,20,23,24,27,28,29,31,35,37,39,44,45,50,52,56,61,62,63,76,80,81,83,84,85,88,89,91,96,98,101,102,103,119,127,136,137,140,141,142],speed:[96,99],sperat:42,spi:[1,17,18],spider:84,spin:109,split:[100,102],sprintf:56,sqlite:4,squeue:[56,67,97,99],squeue_wrapp:56,src:[4,5,63,96],srun:[67,100],srv:[20,23,61,63,132],srw:80,ssh:[30,39,44,45,51,54,56,58,60,62,63,64,65,66,67,70,99,101,102,106],ssh_allow:[20,56,62],ssh_host:[63,102],sshd:63,ssl:[2,4,14,18,53,55,85],ssl_protocol:85,sslcacertificatepath:18,sslcertificatechainfil:[18,55,85],sslcertificatefil:[18,55,85],sslcertificatekeyfil:[18,55,85],sslengin:18,sso:[11,13,20],sss:137,sssd:[58,98,137],stabil:143,stabl:[96,143],stack:63,staff:[20,49,100],stage:[20,31,44,51,71,80,83,85,95],staged_root:[44,126,137],stale:73,standalon:[5,18],standard:[12,18,20,34,44,56,62,83,88,106,132,137],stanford:52,stanza:56,start:[0,1,4,7,14,15,20,21,22,23,33,35,38,39,43,44,48,49,50,51,53,55,59,61,62,63,67,76,83,84,85,88,89,90,91,93,94,96,97,100,101,102,109,110,113,114,115,117,121,125,126,128,130,135,136,138,139,140,141],start_dat:27,start_index:27,start_respons:141,start_tim:88,starter:[51,86,101,139],startserv:47,startup:[28,84,89,128,139],stata:[52,138],stata_pid:138,state:[16,32,51,100,109],statement:[23,30,56,87,119,127,137],static_config:50,staticcli:4,staticmaxag:18,statu:[18,20,27,50,53,66,69,80,83,94,96,101],stderr:[49,60,69,99],stdin:60,stdout:[12,49,60],step:[5,14,20,30,35,36,38,95,96,98,100,107,109,110,118,123,125,133,140,141,142],step_siz:27,stick:18,still:[15,20,24,29,30,34,36,55,56,58,90,94,97,98,100,102,103,107,109,142],stop:[18,19,20,44,76,83,88,135],storag:[4,62,84,136],storage_fil:4,store:[2,4,20,45,55,83,84,85,91,94,101,102],str:60,strategi:[11,63,102,107],stream:98,streamlin:137,strict:[63,85],strict_host_check:63,stricthostkeycheck:63,strictli:138,string:[4,10,11,12,20,23,24,34,35,39,43,44,56,63,69,81,83,84,85,87,88,89,90,96,97,98,102,113,114,140],strip:[10,13,19,44,85],structur:[20,31,80,96,137],student:102,studio:52,style:20,styleoverlai:126,stylesheet:20,stylist:45,styliz:31,sub:[7,19,28,31,45,72,75,85],sub_capt:20,sub_request:72,sub_uri:[72,75],subapp:[42,97],subcategori:[20,37,140,141,142],subdirectori:[20,141],subject:20,submenu:20,submiss:[21,22,24,28,31,33,35,49,51,56,60,61,64,65,66,67,69,70,86,117,119,127],submission_nod:60,submit:[0,20,22,23,24,26,28,29,31,32,33,40,41,42,44,45,51,52,53,54,56,60,62,63,69,70,71,84,88,95,96,97,98,99,101,102,107,111,112,113,114,115,116,117,121,122,124,125,131],submit_arg:69,submit_as_hold:88,submit_host:[63,64,65,66,67,70],submit_script:[119,127],submodul:5,subscript:[57,102],subsequ:[35,61,63,72,80,103],subset:[20,29,100,102],subshel:126,substitu:49,substitut:[23,43,45,66,113,119,127],subsystem:18,subtitl:20,success:[18,20,24,51,60,61,63,82,96,106],successfulli:[3,12,22,96],succss:49,sudo:[4,5,8,10,13,18,19,20,29,30,39,47,50,54,55,57,58,63,69,72,73,74,75,76,77,78,79,80,81,85,96,97,98,99,100,101,102,103,104,105,116,118,123,133,140,141,142],sudoer:[50,134],suffici:[14,62,102,132],suffix:20,suggest:[20,47,103,107],suit:[102,132],sum:63,summari:[8,29],sun:[66,97],supercomput:[51,56,63,96,137],supercomputing_support:20,superior:129,supplement:[29,62],supplementalgroup:62,suppli:[1,4,12,20,23,35,42,43,44,62,69,83,84,85,88,103,104,113,114],support:[1,4,6,10,13,14,19,25,29,34,35,38,41,43,51,53,56,57,61,63,64,65,66,67,83,85,93,94,102,106,124,125,137],support_ticket:[20,84],support_url:20,suppos:[49,56,84,109],supremm:101,sure:[12,16,19,20,44,52,57,63,83,109,113,117,125,132],svc_acct_fil:62,svg:[20,37],swap:134,swester:103,symbol:20,symlink:[20,29,30,83,97,98,109,110,116,132],syntax:[33,35,66,119,127],sys:[11,19,20,24,27,29,30,42,44,49,60,69,72,83,84,85,91,94,96,97,98,100,103,109,110,116,118,122,123,131,133,140,141,142],sysconfig:[4,58],syslog:12,system:[2,4,7,8,12,13,18,23,28,34,35,42,43,44,45,46,50,51,53,54,55,57,58,63,69,72,73,76,82,83,84,85,88,93,94,95,96,97,98,100,102,103,104,106,109,113,116,118,119,122,123,125,127,131,132,133,134,141,143],systemat:12,systemctl:[2,4,18,19,20,47,50,57,63,100,101,102,103,104,135],systemd:[4,18,50,51,54,82,100],systemtrai:126,tab:[5,17,19,20,56,62,84,95,102,109,116,122,131,140,141],tabl:[7,62,72,93,94,95,96,97,98,99,101,102],tag:[18,20,51,84,96,97,110,113],taglin:98,tai:126,tail:[66,138],take:[1,10,12,18,20,23,24,29,33,39,43,45,53,63,82,95,96,97,98,102,109,113,114,115,121,130],taken:[24,43,98],tandi:51,tap:[20,103],tar:[18,50],target:[5,18,27,33,50],task:[54,69,96,100,125,138],tcp:[0,4,58],team1:[20,84],team:[20,29,85,97,100,101,103,107,138,143],technic:0,techniqu:33,technolog:51,technot:128,techsquareinc:52,tee:63,telephone_field:35,tell:[12,20,34,57,62,63,113,114,142],templat:[5,23,28,31,33,35,45,51,56,63,75,82,83,86,87,88,89,90,96,106,113,114,119,125,126,127,128,132,137,138],template_root:83,temporari:[44,97],temporarili:87,ten:[20,39,56],tensorboard:52,term:[26,42,96],termin:[61,84,102,110,121,126,129],terribl:60,tesla:125,test:[5,12,20,24,30,36,39,46,51,54,56,57,62,85,90,93,94,96,97,98,99,100,101,102,103,104,109,117,143],test_checkbox:36,test_hidden_field:36,test_job:69,test_jobs_cluster1:69,test_resolution_field:36,test_text_area:36,test_text_field:36,texa:51,text:[15,16,24,29,35,36,37,51,53,63,84,88,99,102,106,113,114,140,141],text_area:[20,35,36],text_field:[35,36],textarea:36,than:[8,12,17,20,24,35,43,47,49,67,83,84,85,95,100,101,102,110],thank:[92,97,99],the_answ:60,the_connect_api:[87,89],the_quest:60,thei:[6,7,12,16,20,24,27,29,30,32,34,35,42,43,49,54,58,62,63,85,87,89,90,91,97,98,100,101,102,103,116,122,124,125,131,136,137,143],them:[5,10,20,24,29,30,32,35,36,42,45,54,56,61,62,84,101,102,103,116,122,131],theme:[1,4,5,14,18,51,84,106],themselv:[20,29,35,62,116,122,131,135,138],theori:109,therebi:106,therefor:81,thi:[0,2,3,4,6,7,8,10,11,12,13,14,15,16,17,18,19,20,21,22,23,24,27,29,30,32,33,34,35,36,37,38,39,40,41,42,43,44,45,47,49,51,52,53,54,55,56,57,58,59,60,61,62,63,64,65,66,67,68,69,70,71,72,73,74,75,76,77,78,79,80,82,83,84,85,86,87,88,90,91,93,94,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,112,113,114,115,116,117,119,121,122,124,125,126,127,128,129,130,131,132,134,136,137,140,141,142,143],thing:[14,20,27,29,35,46,49,56,62,85,97,98,102,106,108,137,142],think:[23,107],thirteen:102,this_remote_username_does_not_exist:12,those:[6,17,20,29,30,35,62,63,84,91,98,100,103,109,132,141],though:[67,85,102,103,109,136,142,143],thought:60,thread:18,threadlimit:47,threadsperchild:47,three:[9,18,20,35,43,45,91],threshold:[20,97,100],through:[0,4,12,19,20,21,24,27,29,35,36,38,39,45,61,62,63,83,84,85,87,91,93,96,99,100,101,102,103,104,105,106,107,109,112,113,115,117,121,125,130,132,136,137,142],throughout:[18,37,51,88],thu:[20,29,96],thumb:35,ticket:[51,53,57,84,106,107],tid:12,tie:84,tile:20,till:20,time:[1,12,16,18,20,27,29,32,34,35,43,44,47,51,57,62,63,83,84,85,87,88,96,99,101,102,103,105,107,117,125,126,132,134,140,141,142],time_loc:83,timeout:[44,63,87,89],timeoutstartsec:18,timeoutstopsec:18,timer:68,timestamp:[20,27,62],tip:[46,51],titl:[20,22,23,24,39,40,54,56,61,62,63,64,65,66,67,70,83,84,98,99,113],tls:[18,55,62],tls_cert:4,tls_kei:4,tlscert:4,tlsclientca:4,tlskei:4,tmp:[4,50,57,60,63,80,83,88,97,98,102,104,105,132],tmux:63,tmux_bin:63,to_:87,to_i:[23,24,43,44,119,127,136,137],todo:62,togeth:[42,63],toggl:[20,34,37,103],token:[16,20,49,66,83,85],tong:[52,101],too:[63,87],tool:[24,31,43,45,62,63,82,105,108,120,126,129,135],toolbar:126,top:[17,20,22,35,56,88,100,101,113,116,122,131,140,141],topic:[3,6,106,107],torqu:[20,21,35,43,51,53,54,56,58,69,88,113,114,115,121],total:[20,29,34,100,101],total_block_usag:20,total_file_usag:20,touch:[20,109,141],toward:95,toyota:[35,113,114],track:[69,85,97,98],tradit:[24,63,136,137],traffic:[12,20,47,53,103,106],transfer:84,transit:106,translat:[20,101],transport:[20,57,85],tre:97,treat:[20,30],tree:[33,53,57,96,102,126],trigger:[20,98],trivial:134,troubl:[49,96,117],troubleshoot:[20,46,47,49,51,57,111],trust:[2,17,18,29,39,55,97,107],trustedci:99,truststor:[17,18],truststore_hostname_verification_polici:18,truststore_password:18,truststorespi:17,truthi:99,tue:12,tuesdai:96,tuft:51,tune:46,tunnel:[44,45],turbovnc:[39,40,41,89,90,105],turbovncserv:90,turn:[13,20,32,58,62,63,64,103,138],tutori:[1,14,17,18,19,51,52,57,62,98,108,109,112,115,116,121,122,130,131,136,137],tweak:85,twice:105,two:[1,8,14,15,17,20,24,29,34,35,44,49,53,56,62,63,84,93,94,96,97,98,100,101,102,103,104,116,122,131,132,140,141,142,143],txt:[7,20,83,84,141],txt_erb:20,type:[4,17,18,20,23,24,31,34,35,36,45,49,50,56,62,63,72,83,84,96,102,116,119,122,124,125,126,127,131,134,136,137,141,143],typic:[23,24,30,31,45,49,58,83,85,97,102,116,122,131,143],ubuntu:[2,47,53,55,57,102,104,105],ucla:[51,97],uge:66,uid:[4,20,30,56,62,63,83,102,136,137],ultim:20,umask:[44,126],unabl:[20,24,27,44,63,66,69],unauthor:[51,106],unavail:[20,102],unchang:[97,98],uncheck:[34,36],unchecked_valu:36,uncom:18,under:[4,10,19,20,22,24,29,35,39,43,44,45,54,58,69,72,76,80,81,83,85,86,87,91,95,97,98,104,106,107,112,113,114,116,117,119,122,125,127,131,132,140,141,142],undergradu:102,underli:[119,127],underneath:[20,22,23,24,96,113,114],underscor:[20,34,35],understand:[43,85,136,137],undertow:18,underwai:[100,106],undesir:101,unencrypt:106,unexpect:66,unicod:99,uninstal:[102,103],unintend:[20,83],uniqu:[7,20,44,83,97,105,116,122,131],unit:[4,18,20,136],univa:[66,97],univers:[51,52,101,125],unix:[0,2,20,35,79,83,84,85,89,139],unknown:[55,63],unless:[20,23,43,82,83,91,125],unlik:[12,56,109],unnecessari:85,unpack:18,unprivileg:[20,30,63],unread:20,unsaf:84,unset:[10,13,19,20,136],unshar:63,unsupport:56,unsuspect:39,untest:120,until:[16,20,44,63,69,96,97,98,126],untouch:45,unus:[62,100],uofu:52,updat:[4,5,16,19,20,27,29,39,42,51,53,57,62,63,75,82,83,84,90,93,94,95,96,97,99,101,106,117,119,127,134,136,140,141,142],update_ood_port:[4,10,13,19,20,39,82,98,99,100,101,102,103,104],upgrad:[10,20,39,69,92,106,143],upload:[51,83,84,102,106],upload_en:84,upon:[24,107],upper:[5,12,16,109],uppercas:35,uppi:102,upstream:20,upto:20,uri:[4,11,17,19,20,45,72,75,83,85,140],url:[2,11,12,16,17,19,29,37,39,45,51,52,56,63,72,80,81,83,84,85,97,102,106,109,110,116,118,122,123,131,133,140,142],url_field:35,urldecod:12,usabl:[16,102],usag:[20,27,29,56,62,64,82,85,97,99],use:[0,2,4,7,8,10,12,13,14,15,16,17,18,19,20,21,23,24,27,29,32,33,34,35,36,39,40,42,43,44,45,54,56,57,58,59,60,61,62,63,66,67,68,69,82,83,84,85,87,88,89,90,96,97,99,100,103,104,105,109,110,113,114,115,117,119,121,124,125,127,130,132,134,136,137,139,140,141],use_job_pod_reap:62,use_mainten:[20,85],use_nfs_home_dir:58,use_rewrit:[20,85,99],use_uid:63,useabl:56,used:[4,11,12,13,15,16,19,20,23,26,33,35,37,39,40,42,43,44,45,49,50,53,56,58,60,61,62,63,82,83,84,85,88,90,95,96,97,98,100,101,102,103,104,113,117,119,120,124,125,127,129,132,135,137],useful:[20,29,30,35,36,44,45,49,51,56,58,62,85,87,96,101,117,125,138],useless:84,user1:20,user:[1,2,4,5,6,8,9,10,11,13,14,17,18,19,21,22,23,24,26,27,28,29,30,31,32,34,36,39,40,42,43,44,45,49,51,53,54,56,57,58,60,66,69,72,75,76,77,78,79,80,81,82,83,84,87,88,89,91,93,95,96,97,98,99,101,102,103,105,106,107,112,113,114,115,116,117,119,121,122,124,125,126,127,128,130,131,132,134,136,137,138,140,141,142],user_defined_context:117,user_env:[12,85],user_map:12,user_map_cmd:[7,8,12,85,102],user_map_match:[12,13,85,102],user_nam:20,user_path:134,user_regex:83,user_set:84,user_settings_fil:84,useradd:[4,18],userattr:4,userinfo:[7,16],userknownhostsfil:63,usermatch:4,usermod:29,usernam:[4,5,7,12,20,27,50,56,61,62,83,85,89,102,103,116,136],username_prefix:62,usernameplacehold:20,usersearch:4,uses:[7,12,13,19,20,23,30,33,40,52,56,57,60,62,63,70,83,88,91,96,101,102,103,105,113,134,139,140],using:[0,1,3,4,7,8,12,14,17,18,20,21,23,29,31,33,34,35,39,43,44,45,47,50,53,54,55,56,58,59,60,62,63,66,75,83,84,85,88,91,94,96,97,98,100,101,103,104,105,109,110,113,116,119,122,124,126,127,131,132,136,137,139],usr:[2,4,20,23,29,30,39,40,50,55,56,59,60,61,62,63,64,65,66,67,69,70,72,80,83,89,90,102,132,136,137,141],usual:[20,60,105,109],utah:[51,52],utf:[60,90],util:[7,29,43,63,87,93,94,95,103,105,125,136,140,141,142,143],utility_img:136,uuid:[32,63],uuid_s:63,uuid_tmux:63,uuidgen:63,uwsgi_temp:80,v8314:[97,98],vagrant:58,valid:[2,8,10,13,17,19,20,22,60,61,62,70,83,84,85,99,100,117,119,124,125,127,132],valu:[4,5,12,16,17,18,20,21,31,33,35,36,37,39,40,42,43,45,47,56,58,60,62,63,64,65,66,84,85,87,91,99,101,113,114,116,117,119,122,124,125,127,131,132],varaibl:62,vari:[17,20,35,47,85,143],variabl:[12,20,23,29,30,32,33,35,40,43,44,45,60,62,69,83,84,85,87,88,89,91,97,99,100,101,102,103,109,113,119,127,132,136,137],variant:[20,34,42],variat:12,varieti:29,variou:[4,20,35,45,53,54,57,83,84,85,101,106],vdi:[20,96],vector:60,vendor:[17,18,97,98,142],vendor_rubi:83,venv:141,verbatim:125,verbos:85,verheyd:100,veri:[1,24,35,39,49,61,67,84,87,103,116,122,131],verif:18,verifi:[5,14,17,18,19,20,38,53,54,62,96,97,98,100,101,102,104],version:[1,4,5,12,15,20,27,34,35,36,42,47,49,50,51,56,62,63,82,83,84,92,100,101,102,104,105,107,120,125,126,132,134,140,141,142],vglrun:126,via:[0,2,4,7,15,18,19,20,29,46,56,58,60,91,93,98,107,125],view:[15,17,20,28,29,31,33,54,62,87,94,95,102,103,106,116,117,119,122,127,131,140,141,142],viewer:20,vigil:106,vim:109,virtual:[85,104,139],virtualbox:58,virtualgl:[126,129],virtualhost:[18,46,57],virut:85,vis:[59,125,126],visibl:[101,102],visit:[20,45,107],visual:[0,52,102,125,126],vital:107,vmd:52,vnc:[28,31,35,36,39,40,41,44,47,56,63,66,85,86,87,93,125,126,127,138],vnc_arg:89,vnc_clean:89,vnc_contain:[43,90],vnc_passwd:89,vncserver:89,volum:20,volume2:20,volvo:[35,113,114],vpn:100,vuej:124,vuler:106,vulner:[20,103,106],wai:[12,20,30,35,42,43,45,57,62,63,69,96,97,98,100,101,102,103,109,132,136,137],wait:[44,60,89,98,117,125,138],walk:[21,27,38,112,113,115,117,121,125,130,132,136,137,142],walkthrough:[1,95],wall:[43,44,88],wall_tim:[35,43,88,136,137],walltim:[63,69,101],want:[18,19,20,22,23,24,27,30,32,34,35,36,39,42,43,44,45,47,49,54,56,57,62,83,88,96,97,98,99,100,101,102,106,109,113,114,116,119,122,125,126,127,131,136,137,140],wantedbi:18,warn:[29,39,49,51,56,69,85,96,99,102,103,106,116,122,131],weak:99,web:[0,4,10,13,15,16,17,19,20,26,27,28,29,35,40,43,44,45,47,49,50,57,58,60,63,72,73,74,83,84,85,95,96,97,98,99,100,101,102,103,104,105,109,113,114,117,119,127,139,141,142],web_2:102,web_3:[57,104],webdev07:18,webframework:101,webinar:51,webpack:124,webpag:[34,47],webserv:18,websit:[3,51,85],websocket:[51,89,105,106,140,141,142],websockfii:89,websockfiy_cmd:89,websockifi:[39,40,41,89,90,103,105],websockify_cmd:[39,40,89],websockify_heartbeat_second:89,wed:12,week:[45,143],welcom:[29,84,143],welcome_html:20,well:[4,7,8,12,15,19,20,24,43,45,46,47,49,52,57,62,76,81,83,84,85,95,96,97,98,101,103,112,121,125,137],went:96,were:[12,18,27,35,51,73,82,84,96,97,98,99,100,101,102],wget:[2,18,50,57,62,102,104],what:[7,8,12,17,20,34,35,39,43,49,52,53,56,57,62,63,66,83,84,85,89,90,100,102,103,106,109,113,114,125,136,142],whatev:[20,22,47,97,109,125,126],whati:132,when:[1,4,11,12,13,16,18,19,20,22,23,24,26,29,32,33,34,35,36,37,43,44,45,47,49,55,56,58,60,61,62,63,64,67,80,82,83,84,85,87,88,91,94,95,96,97,98,100,101,103,104,105,109,110,111,113,114,116,117,119,122,125,126,127,128,131,132,136,137,140,141],whenev:[24,96,99],where:[10,12,18,20,26,29,30,34,35,36,44,45,49,54,55,62,63,66,79,83,84,85,88,97,99,100,101,103,105,113,114,116,117,119,122,125,127,131,132,134,136,137,139,140,141,142,143],whether:[18,35,49,56,63,84,88,96,99,116,122,124,131],which:[4,7,11,14,15,18,19,20,22,23,24,27,30,31,33,34,43,47,49,52,56,58,60,62,63,84,88,91,96,97,98,100,101,102,103,104,105,106,108,109,113,114,119,125,126,127,132,134,135,136,137,138,140,141,142,143],whichev:20,white:20,whitelist:98,whitelist_path:[97,103],whitespac:20,who:[30,51,77,99,101,103,104],whoami:62,whoever:29,whole:[84,101,109,125,137],whom:29,whorka:103,whose:[20,35,97],why:[27,29,128],wide:[35,62,96],widest:105,widet:104,widget:[20,28,31,35,84,88,113,114,125],width:20,widthperc:126,wildcard:[20,83,85],wildfli:18,willing:[101,105],window:[20,37,45,111,121,128,129],wipe:10,wish:[20,27,29,35,45,62,84,90,101,103,104],within:[10,12,20,21,25,33,35,37,41,44,45,63,83,84,85,104,106,107,108,113,114,115,117,119,120,121,127,128,129,130,135,141,143],without:[1,5,20,35,42,46,51,54,56,57,60,63,83,84,85,96,97,98,100,101,102,103,121,132,134],won:[19,54,80,85,102,113,114,141,142],word:[34,99,109,110],work:[1,4,9,14,15,18,20,22,27,29,30,35,38,42,43,45,49,50,51,52,54,56,57,59,62,63,67,83,85,87,88,96,97,98,99,100,101,102,108,109,110,112,116,117,120,122,125,126,128,131,132,134,136,137,138],work_dir:87,workbench:52,workdir:88,worker:[56,62,137],workflow:[20,44,102],working_dir:136,workspac:44,workspacenam:126,world:[19,85,140,141,142],worth:12,would:[1,10,12,18,19,20,22,23,24,27,29,34,35,39,42,43,44,49,51,52,53,57,58,62,76,84,99,100,102,119,127,137,138,143],wouldn:[119,127],wrap:[40,43,60,87,99,103,137],wrapper:[43,51,54,56,60,61,63,64,65,66,67,70,83,87,102,106,141],writabl:69,write:[12,18,27,49,56,81,83,102,103,136,137,139],written:[4,24,35,63,87,89,97,99,100,103,142],wrong:[47,109],wrote:103,wsgi:[28,139,141],wss:20,www:[15,18,20,24,29,30,42,56,63,69,72,83,85,91,94,96,100,116,118,119,122,123,125,127,128,131,133,140,141,142],x11:[59,89,90],x86_64:[57,90,100,102,105],x_scl:[83,91],xalt:126,xauth:90,xdg_cache_hom:126,xdg_config_hom:[104,126],xdg_data_dir:91,xdg_data_hom:126,xdmod:[51,106],xdmod_url_warning_messag:20,xdmod_url_warning_message_seconds_after_job_complet:20,xdmod_widget_job:20,xdmod_widget_job_effici:20,xfce4:126,xfce:[21,25,63,90,121,129,138],xfsettingsd:126,xfwm4:126,xhr:98,xml:[2,5,7,17,18,101],xorg:90,xrender:128,xsede:7,xsetroot:126,xstartup:89,xstata:138,xxx:143,xxxx:84,xxxxxxxxxxxx:84,xy001:39,xy125:39,xzf:18,yaml:[4,10,19,20,22,23,24,34,35,39,43,54,56,61,62,63,64,65,66,67,70,82,83,84,91,95,96,100,113,119,127,137],yes:[35,36,52,60],yet:[52,142],yml:[2,4,7,8,10,11,13,16,19,20,22,23,24,28,29,30,31,33,39,40,42,44,51,54,56,61,62,63,64,65,66,67,69,70,71,82,87,88,91,95,96,97,99,100,101,102,103,104,109,111,113,114,117,119,124,125,127,132,140,141,142],you:[1,4,5,6,7,10,12,13,15,16,17,18,19,20,21,22,23,24,25,27,28,29,30,32,33,34,35,36,37,38,39,40,41,42,43,44,45,46,47,48,49,50,51,52,53,54,55,56,57,58,61,62,63,64,66,67,69,76,81,82,83,84,85,86,87,88,90,91,95,96,97,98,99,100,101,102,103,104,105,106,107,108,109,110,112,113,114,115,116,117,118,119,120,121,122,123,125,126,127,129,130,131,132,133,135,136,137,138,140,141,142],your:[1,2,4,5,7,10,13,14,15,17,20,21,22,23,24,27,28,29,31,35,36,38,39,43,44,45,46,47,48,52,53,54,55,57,61,62,63,66,67,68,69,84,85,86,91,95,96,97,98,99,100,101,102,103,104,109,110,112,113,115,116,117,118,119,121,122,123,125,126,127,130,131,132,133,136,137,140,141,142],yum:[2,4,5,18,19,50,55,57,58,90,96,97,98,99,100,101,102,103,104,134],yyi:143,zip:29,zone:[4,58],zoolei:100,zzz:143},titles:["Architecture","2. Authentication","SAML Authentication with Active Directory Federated Services (ADFS) and mod_auth_mellon","CAS","OpenID Connect with Dex","Two Factor Auth using Duo with Keycloak","Other Insecure Options","NSF ACCESS","OpenID Connect","Overview","1. Configure Apache Authentication","3. Configure Logout","2. Setup User Mapping","Shibboleth","OpenID Connect with KeyCloak on RHEL7","4. Add Custom Theme","5. Configure Keycloak with CILogon","2. Configure Keycloak","1. Install Keycloak","3. Configure OnDemand to authenticate with Keycloak","Customizations","Enable Interactive Desktop","2. Add a Cluster","4. Custom Job Submission","3. Modify Form Attributes","1. Software Requirements","Glossary","Adding Google Analytics","App Development","App Sharing","Enabling App Development","Interactive Apps","Adding Additional Information to the session cards","Connection Parameters conn_params","Dynamic Form Widgets","User Form (form.yml.erb)","Form Widgets","Manifest yml files","Setup Interactive Apps","3. Enable Reverse Proxy","2. Modify Cluster Configuration","1. Software Requirements","Sub-Apps and Reconfiguring exsting apps","Job Submission (submit.yml.erb)","Render Template","Connection View","Debugging and Monitoring","Apache httpd tips","Debugging Interactive Apps","Logging","Prometheus Monitoring","Open OnDemand","Install Other Interactive Apps","Installation","Cluster Configuration","3. Secure Apache httpd","Cluster Config Schema v2","1. Install Software","4. Add SELinux","Advanced Resource Manager Configurations","A Working Example of a bin_overrides Script","Cloudy Cluster","Kubernetes","LinuxHost","LSF","PBS Professional","Grid Engine","Slurm","Systemd","Test Configuration","Torque","Configuration Reference","nginx_stage app","nginx_stage app_clean","nginx_stage app_list","nginx_stage app_reset","nginx_stage nginx","nginx_stage nginx_clean","nginx_stage nginx_list","nginx_stage nginx_show","nginx_stage pun","Usage","ood-portal-generator","nginx_stage.yml","ondemand.d/*.yml files","ood_portal.yml","submit.yml.erb","Basic Batch Connect Options","Batch Connect Script Options","Batch Connect VNC Options","Batch Connect VNC Container Options","PUN environment","Release Notes","v1.0 Release Notes","v1.1 Release Notes","v1.2 Release Notes","v1.3 Release Notes","v1.4 Release Notes","v1.5 Release Notes","v1.6 Release Notes","v1.7 Release Notes","v1.8 Release Notes","v2.0 Release Notes","v3.0 Release Notes","v3.1 Release Notes","Requirements","Security","Vulnerability Management","Developing The OOD Dashboard","Developing the Dashboard App","Developing the Shell App","Tutorials: Interactive Apps","Add Custom Queues/Partitions","Use a Global Static List","Use a Local Static List","Add a Jupyter App","2. Copy Jupyter App","3. Customize Attributes","5. Deploy Jupyter App","4. Modify Submit Parameters","1. Software Requirements","Add a MATLAB App","2. Copy MATLAB App","7. Deploy MATLAB App","6. Edit Form.js","3. Customize Attributes","4. Edit Launch Script","5. Modify Submit Parameters","8. Known Issues","1. Software Requirements","Add an RStudio App","1. Copy RStudio App","4. Customize Attributes","5. Deploy RStudio App","3. Setup Singularity","2. Software Requirements","Add a Jupyter App on a Kubernetes Cluster","Add a Jupyter App on a Kubernetes Cluster that behaves like HPC compute","Troubleshooting Interactive Apps","Tutorials: Passenger Apps","Starter NodeJS Application","Starter Python Application","Starter Ruby Application","Versioning Policy"],titleterms:{"2fa":100,"break":[56,102,103,104],"default":[20,24,30,72,80,97,101,103],"export":50,"new":[17,96,100,101,102,103,104],"public":85,"static":[113,114],"switch":137,"throw":138,"while":63,Added:[99,100,101],Adding:[27,32,45,102],Bus:63,CAS:3,PBS:[23,65,119,127],QoS:101,The:[29,63,108,134,137,138],UGE:97,Use:[113,114,126],Used:103,Using:[20,29,62,141],aarch64:104,abil:[97,99,100,101],abl:48,access:[0,7,20,29],account:[96,100],acl:56,activ:[2,93,94,96,98,100,102],activejob:[100,102],adapt:[0,23,99,100],add:[10,15,16,17,19,20,22,24,57,58,97,98,99,100,101,109,112,113,114,115,121,130,136,137,140],added:[93,104],addit:[32,101],adf:2,administr:[103,104],advanc:[12,59,64],advantag:106,after:[44,58,99],alert:100,all:[97,102],allow:20,allowlist:[20,101],altern:134,alwai:99,amazon:104,analyt:[27,104],ani:63,announc:[20,96],apach:[4,10,18,19,39,47,55,99,100,102,103,104],app:[0,20,28,29,30,31,38,42,48,52,62,72,93,94,96,97,98,100,101,102,103,109,110,111,115,116,118,121,122,123,130,131,133,136,137,138,139,140,141,142],app_clean:73,app_list:74,app_reset:75,applic:[20,63,93,94,95,96,97,98,99,140,141,142],approach:63,architectur:[0,105],arm64:104,arrai:[20,98,99],asset:85,attribut:[24,35,102,113,114,117,125,132],audienc:62,audit:[99,107],auth:5,authent:[0,1,2,10,19,62,101],auto:20,autogener:97,autoload:103,automat:[12,20,35,103],avail:102,background:138,backport:143,balanc:[20,100],bar:20,base:[20,34,96,97],basic:[87,98,141],batch:[20,43,86,87,88,89,90,97,100,101],batch_connect:56,batchconnect:99,becaus:138,been:103,befor:44,behav:137,behind:[4,101,103],being:48,beta:101,better:[96,97,101],between:[102,137],bin_overrid:[56,60],blacklist:103,block:20,boot:[140,141],bootstrap:62,brand:[20,100],broker:100,browser:105,bug:99,build:[53,57,110,134],bundler:102,button:99,cach:[35,101],can:29,cancel:20,cannot:138,card:[20,32,35,100,102],categori:20,ccq:101,cento:104,cgroup:63,chang:[20,24,43,55,93,94,96,97,98,99,102,103,104],charact:20,checkbox:104,chines:101,chrome:101,cilogon:[16,100],cleanup:44,client:[7,17],cloudi:61,cluster:[22,35,40,54,56,61,62,63,96,100,101,113,136,137],code:[24,29,35],command:[12,20,96],comment:107,common:[61,66],commun:[51,62],complet:[32,48,101,104],compon:[93,94,95,96],compos:[20,94,96,99,100],compress:99,comput:[99,100,137],conclus:[106,107],conf:100,config:[19,20,56,96,99,100,103,142],configmap:136,configur:[2,4,5,10,11,12,16,17,19,20,27,33,35,40,43,50,54,59,62,63,69,71,83,84,85,96,101,102,103,109,113],conn_param:33,connect:[4,8,14,20,33,43,45,48,85,86,87,88,89,90,97,100,101,104],consider:106,contain:[0,63,90,136,137],context:[0,44,103],contribut:51,control:[29,99,102,106],copi:[97,101,116,122,131],core:97,creat:[20,109,110,141],css:20,custom:[4,15,20,23,35,56,98,102,103,104,112,113,114,117,125,132],customiz:97,dai:[20,102],dashboard:[0,20,29,50,93,94,96,97,99,100,101,102,108,109],data:49,debian:104,debug:[12,46,48,96,101],dedic:30,def:90,defin:35,delet:103,depend:[57,100,102,103,104,142,143],deploi:[62,118,123,133],deprec:[103,104],desktop:[0,21,24,93,96,138],detail:[20,96,97,98,99,100,101,102,103,104],dev:[109,110],develop:[28,30,97,108,109,110],dex:[4,12,20,55,101,103],diagram:0,differ:18,dir:97,direct:[102,103,104],directori:[2,20,96,97,102,103,109],disabl:[20,97,99,100,101,103,104],disclosur:107,discover:97,disk:20,displai:[35,96,103],document:[98,100,103],down:56,download:[20,104,134],drop:[100,101,103],duo:[5,98,100],dure:103,dynam:[34,43,104],easier:98,edit:[55,124,126,140],effect:55,el6:100,el8:100,el9:103,element:34,embed:96,enabl:[21,29,30,39,57,96,97,99],enforc:[62,63],engin:[66,99],enhanc:[97,102],entir:34,entri:100,env:109,environ:[66,91,97,141],environmet:141,erb:[32,35,43,44,86,102,104],error:[20,63,97,99,110,128,138],etc:96,everi:100,everyon:30,exampl:[12,29,33,35,43,45,56,60,72,73,74,75,76,77,78,79,80,86],exchang:62,execut:[29,43],exist:63,experiment:97,express:12,exst:42,extend:101,factor:5,featur:[103,104],feder:2,fetch:99,field:[24,96,101],file:[12,20,29,37,44,55,84,90,93,99,100,101,102,103,104,109,141,142],fileset:20,finish:138,firefox:97,firewal:[4,58],first:56,fix:[20,97,99,103],flask:141,flow:0,fluxbox:126,form:[20,24,34,35,36,99,103,113,114,124],format:102,formerli:94,framework:140,from:[4,50,53,57,93,94,95,96,97,98,99,100,101,102],front:18,full:[136,137],fulli:20,gem:[100,101,102],gener:[19,20,52,72,75,76,77,80,82,85,93,100,101],get:128,gke:62,global:[43,86,113],globu:104,glossari:26,googl:[27,104],grafana:[20,50,100],grid:[66,99],gridengin:101,handl:[101,113,114],hard:[24,35],hardwar:105,has:[102,103],have:[96,103],help:[20,24,96,103],hide:[20,34,96],home:[20,97,98],hook:[44,62],host:[0,2,18,20,30,63,97,100,101],hpc:137,html:[32,96,99,104],httpd:[47,55],icon:102,ident:[16,100],ignor:96,illeg:20,imag:[62,134],improv:[97,98,99,100,104],includ:97,incommon:7,individu:20,info:[27,32,101],inform:[10,32,45],infrastructur:[93,94,95,96,97,98,99],init:136,initi:[18,103,140],input:61,insecur:6,instal:[2,4,5,18,19,29,50,52,53,57,72,80,96,100,142],instanc:16,instantli:138,instead:96,instruct:45,integr:[20,101,102,104],interact:[20,21,31,38,48,52,96,102,103,111,138],interfac:102,introduct:[106,107],invalid:66,invok:126,issu:[61,66,97,110,128],item:[20,35,96],itself:138,java:[128,138],javascript:[97,104],job:[0,20,23,43,56,63,66,93,94,96,98,99,100,101,102,113,114,138],json:103,jupyt:[33,115,116,118,136,137],just:63,kei:97,keycloak:[5,14,16,17,18,19,62,98,100],know:109,known:128,kuberenet:62,kubernet:[62,136,137],kyverno:62,label:[24,34],land:102,larg:102,launch:[20,42,63,102,103,126],layout:[20,102],ldap:[4,17],level:96,libcgroup:63,librari:63,like:137,limit:[20,63,106],link:[20,96,100,102],linux:[0,100,104],linuxhost:[23,24,63],list:[96,113,114],load:63,local:[20,99,101,109,114],locat:[47,48,103],log:[47,48,49,96],login:56,logo:101,logout:[11,85],longer:[96,102],lsf:[64,99],main:[19,43,44],mainten:[20,100],major:[102,143],make:[30,96],malform:100,manag:[4,59,62,102,107,119,126,127],mani:99,manifest:[20,37,99,102],manual:20,map:[7,12,16,72],mapfil:12,markdown:99,match:100,mate:126,matlab:[121,122,123,126,138],max:[34,101],maxim:138,memcach:102,menu:[20,100],messag:[20,24,102],meta:56,metadata:102,min:34,minim:24,minor:143,miss:[20,97],mod_auth_mellon:2,mod_auth_openidc:[19,101],mod_ood_proxi:93,mode:[20,97,100],modifi:[24,40,113,119,127],modul:10,monitor:[46,50],more:27,motd:20,mount:[136,137],move:138,multipl:[96,99,101],name:[20,66,96,100],nativ:[45,101],navbar:[97,103],navconfig:103,navig:20,nginx:[76,85,98],nginx_clean:[77,100],nginx_list:78,nginx_show:79,nginx_stag:[72,73,74,75,76,77,78,79,80,83],ngnix_stag:99,nightli:143,node:[59,62,96,99,100],nodej:[97,102,140],none:97,note:[92,93,94,95,96,97,98,99,100,101,102,103,104],notebook:33,novnc:101,now:[100,101,102],nsf:7,number:143,object:44,offer:99,oidc:[7,62],old:[103,110],ondemand:[4,10,17,19,20,27,30,51,55,62,84,98,99,100,101,102],onli:[55,56],ood:[2,19,20,82,93,100,101,108,109],ood_auth_map:102,ood_port:[55,85],ood_ssh_host:99,open:[27,51,55,62,96,99,102],openid:[4,8,14,85],oper:105,option:[6,20,30,34,43,72,75,76,77,79,80,82,83,85,86,87,88,89,90,96,97,99,103,104],other:[0,6,34,52,101,119,127],overrid:20,overview:[0,9,20,29],own:34,packag:[4,103,104],page:[20,97,98,102,103],panel:[45,101],paramet:[33,43,119,127],partit:112,pass:99,passeng:[0,97,98,139],password:45,past:[97,101],patch:143,path:104,pbspro:99,peer:[29,98],per:[62,85],percent:100,perform:[47,64,98],period:96,permiss:29,pid:99,pin:[20,102],place:18,polici:[62,107,143],port:20,portal:[10,19,55,82,93,100,101],post:45,ppc64le:104,predefin:[20,35],prepar:2,privat:62,process:50,profession:[23,65,119,127],profil:[20,84,103],project:[20,100],prometheu:50,prompt:61,properti:84,protect:101,provid:[16,102],proxi:[4,39,45,85,103],publish:[140,141,142],pun:[80,91,97],python:141,qualiti:99,queri:27,queue:112,quick:[42,103],quota:[20,97,99],rail:142,rais:99,realm:17,rebuild:96,recent:103,reconfigur:42,redhat:104,redirect:85,reduc:100,refer:[4,71,106],regener:100,regex:102,regist:16,registr:[7,85],registri:62,reguluar:12,releas:[92,93,94,95,96,97,98,99,100,101,102,103,104],relev:106,remot:[12,20,103],remov:[16,24,99],render:[44,99],report:107,repositori:57,request:[0,136],requir:[25,39,41,72,76,79,80,96,97,102,105,120,129,135],resiz:138,resourc:[59,63,119,127,136],restart:[47,55,100],retain:101,revers:[4,39,45,85,103],rewriteengin:99,rhel7:14,rpm:[50,96],rstudio:[0,98,130,131,133],rubi:[97,101,102,142],run:[96,99,100,103],saml:2,sanit:[10,100],schedul:101,schema:56,scl:[98,102],script:[12,20,43,44,60,88,96,100,126],secret:97,secur:[55,97,99,103,106,107],select:[20,34],selector:104,selinux:[58,100,103],separ:18,server:[18,43],servic:[2,4,47,55,57],session:[0,10,20,32,35,44,45,49,96,100,103],set:[20,34,43,64,86,97,99,100,104,109],setup:[12,38,134],sever:97,sge:[97,98],share:[0,29,63,98,100,102],shell:[0,20,66,93,96,97,99,100,101,102,104,110],shibboleth:[7,13],shortcut:20,show:[47,100],signific:103,simpl:86,sinatra:[101,142],singular:134,size:[20,100],slice:63,slurm:[23,67,97,98,99,101,119,127,137],softwar:[25,41,57,63,105,120,129,135],sourc:[4,50,53,57],spec:[136,137],special:[51,100,101],specif:[63,100],specifi:[30,43],spi:5,ssh:[20,97,100],stale:99,start:[18,57],starter:[90,140,141,142],state:63,step:[18,39],store:96,streamlin:101,string:99,styliz:45,sub:42,submiss:[23,43,99,113,114],submit:[35,43,86,103,119,127,136,137],suggest:100,support:[16,20,84,96,97,98,99,100,101,103,104,105,143],svg:101,system:[0,20,29,49,105],systemd:[63,68],tag:143,taglin:20,take:55,target:63,templat:[20,43,44,52,99],termin:99,test:[50,69],text:[20,98],thank:[51,100,101,103],thei:96,theme:[15,20,102],thing:109,ticket:[20,103],tighter:102,time:143,tip:47,titl:100,token:62,top:96,torqu:[23,70,98,101,119,127],troubleshoot:[63,138],tune:47,tutori:[111,139],two:5,type:43,ubuntu:103,unauthor:20,under:96,understand:20,undetermin:63,updat:[55,58,98,100,102,103,104,143],upgrad:[93,94,95,96,97,98,99,100,101,102,103,104],upload:[20,101,104],url:[20,99],usag:81,use:[98,101,102],user:[0,7,12,16,20,35,55,62,6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\ No newline at end of file
diff --git a/develop/tutorials/tutorials-passenger-apps.html b/develop/tutorials/tutorials-passenger-apps.html
index cd5e681ce..e6338b8fe 100644
--- a/develop/tutorials/tutorials-passenger-apps.html
+++ b/develop/tutorials/tutorials-passenger-apps.html
@@ -39,7 +39,7 @@
   
     
     
-    
+    
     
  
 
@@ -120,7 +120,7 @@
 
  • Install Other Interactive Apps
    • 
 
  • Tutorials: Interactive Apps
    • 
 
  • Tutorials: Passenger Apps
@@ -208,12 +208,12 @@
 
    
 
    Tutorials
    
 
      
-
    • Creating a Status App
@@ -241,7 +243,7 @@

    • Table 11 Project DependenciesTable 9 Project Dependencies
    - ---- - - - - - - - - - - - - - - - - - - - - - - - - - -
    Table 8 Main files

    File

    Description

    config.ru

    entry point of the Passenger Ruby app

    app.rb

    Sinatra app config and routes; this in a separate file from config.ru so -that code reloading will work

    command.rb

    class that defines an AppProcess struct, executes ps, and parses the -output of the ps command producing an array of structs

    test/test_command.rb

    a unit test of the parsing code

    views/index.html

    the main section of the html page template using an implementation of ERB -called erubi -which auto-escapes output of ERB tags by default (for security)

    views/layout.html

    the rendered HTML from views/index.html is inserted into this layout, -where css and javascript files are included

    - - ---- - - - - - - - - - - - - - - - - - - - - - - - - - -
    Table 9 Other files

    File

    Description

    Gemfile, Gemfile.lock

    defines gem dependencies for the app (see Bundler’s Rationale)

    tmp/

    tmp directory is kept so its easier to touch tmp/restart.txt when you -want to force Passenger to restart an app

    public/

    serve up static assets like Bootstrap css; in OnDemand, NGINX auto-serves -all files under public/ directly, without going through the Passenger -process, which makes this much faster; as a result, each static file is -in a directory with an explicit version number, so if these files ever -change we change the version, which is one cache busting strategy

    Rakefile

    this provides a default rake task for running the automated tests under -test/, so you can run the tests by running the command rake

    test/minitest_helper.rb

    contains setup code common between all tests

    vendor/bundle

    This directory is added if you execute bin/bundle install --path vendor/bundle to store app specific gems. This is necessary if you want to add gems or specify specific gem versions used by the app that deviate from those provided by system gemset, or if you are using OnDemand 1.7 or earlier.

    - - -
    -

    Clone and Setup

    -
      -

    1. Login to Open OnDemand, click “Develop” dropdown menu and click the “My Sandbox Apps (Development)” option.

      2. -

    2. Click “New App” and “Clone Existing App”.

      3. -

    3. Fill out the form:

      -
        -

      1. Directory name: quota

        2. -

      2. Git remote: https://github.com/OSC/ood-example-ps

        3. -

      3. Check “Create new Git Project from this?”

        4. -

      4. Click Submit

        5. -
      -
      4. -

    4. Launch the app by clicking the large blue Launch button. In a new browser -window/tab you will see the output of a ps command filtered using grep.

      5. -

    5. Switch browser tab/windows back to the dashboard Details view of the app and -click the Files button on the right to open the app’s directory in the File -Explorer.

      6. -
    -
    -
    -

    Edit to Run and Parse Quota

    -

    The app runs and parses this command:

    -
    ps aux | grep '[A]pp'
-
    -
    -

    We will change it to run and parse this command:

    -
    quota -spw
-
    -
    -
    -

    Update test/test_command.rb

    -

    Run the command to get example data. Copy and paste the output into the test, and -update the assertions to expect an array of “quotas” instead of “processes” -with appropriate attributes.

    -

    Diff:

    -
      def test_command_output_parsing
-    output = <<-EOF
--
--efranz    30328  0.1  0.1 462148 28128 ?        Sl   20:28   0:00 Passenger RackApp: /users/PZS0562/efranz/ondemand/dev/quota
--
-+Disk quotas for user efranz (uid 10851):
-+     Filesystem  blocks   quota   limit   grace   files   quota   limit   grace
-+10.11.200.32:/PZS0562/  99616M    500G    500G       0    933k   1000k   1000k       0
-EOF
--    processes = Command.new.parse(output)
-+    quotas = Command.new.parse(output)
-
--    assert_equal 1, processes.count
-+    assert_equal 1, quotas.count, "number of structs parsed should equal 1"
-
--    p = processes.first
-+    q = quotas.first
-
--    assert_equal "efranz", p.user
--    assert_equal "462148", p.vsz
--    assert_equal "28128", p.rss
--    assert_equal "0:00", p.time
--    assert_equal "Passenger RackApp: /users/PZS0562/efranz/ondemand/dev/quota", p.command
-+    assert_equal "10.11.200.32:/PZS0562/", q.filesystem, "expected filesystem value not correct"
-+    assert_equal "99616M", q.blocks, "expected blocks value not correct"
-+    assert_equal "500G", q.blocks_limit, "expected blocks_limit value not correct"
-+    assert_equal "933k", q.files, "expected files value not correct"
-+    assert_equal "0", q.files_grace, "expected files_grace value not correct"
-  end
-
    -
    -

    Resulting test method:

    -
    class TestCommand < Minitest::Test
-
-  def test_command_output_parsing
-    output = <<-EOF
-Disk quotas for user efranz (uid 10851):
-    Filesystem  blocks   quota   limit   grace   files   quota   limit   grace
-10.11.200.32:/PZS0562/  99616M    500G    500G       0    933k   1000k   1000k       0
-EOF
-    quotas = Command.new.parse(output)
-
-    assert_equal 1, quotas.count, "number of structs parsed should equal 1"
-
-    q = quotas.first
-
-    assert_equal "10.11.200.32:/PZS0562/", q.filesystem, "expected filesystem value not correct"
-    assert_equal "99616M", q.blocks, "expected blocks value not correct"
-    assert_equal "500G", q.blocks_limit, "expected blocks_limit value not correct"
-    assert_equal "933k", q.files, "expected files value not correct"
-    assert_equal "0", q.files_grace, "expected files_grace value not correct"
-  end
-end
-
    -
    -
    -
    -

    Update command.rb

    -

    Run the test by running the rake command and you will see it fail:

    -
    $ rake
-Run options: --seed 58990
-
-# Running:
-
-F
-
-Finished in 0.000943s, 1060.4569 runs/s, 1060.4569 assertions/s.
-
-  1) Failure:
-TestCommand#test_command_output_parsing [/users/PZS0562/efranz/ondemand/dev/quota/test/test_command.rb:14]:
-number of structs parsed should equal 1.
-Expected: 1
-  Actual: 3
-
-1 runs, 1 assertions, 1 failures, 0 errors, 0 skips
-rake aborted!
-Command failed with status (1)
-
-Tasks: TOP => default => test
-(See full trace by running task with --trace)
-
    -
    -
    -

    Warning

    -

    To run commands like rake through the shell you need to make sure you are on -a host that has the correct version of Ruby installed. For OnDemand that likely -means using Software Collections with the same packages used to install OnDemand.

    -

    With SCL, running rake with ondemand SCL package looks like:

    -

    scl enable ondemand -- rake

    -

    You can avoid this by loading the SCL packages in your .bashrc or .bash_profile file. -For example, in my .bash_profile I have:

    -
    if [[ ${HOSTNAME%%.*} == webtest04*  ]]
-then
-  scl enable ondemand -- bash
-fi
-
    -
    -

    This means when I login to the host webtest04.osc.edu the SCL packages will be enabled -in a new bash session. If you did the same you would replace webtest04 with the hostname -of the node you are developing on.

    -
    -

    To get the unit test to pass we need to:

    -
      -

    1. Change the command we are using.

      2. -

    2. Fix the command output parsing.

      3. -

    3. Fix the struct definition.

      4. -
    -
    class Command
-  def to_s
--    "ps aux | grep '[A]pp'"
-+    "quota -spw"
-  end
-
--  AppProcess = Struct.new(:user, :pid, :pct_cpu, :pct_mem, :vsz, :rss, :tty, :stat, :start, :time, :command)
-+  Quota = Struct.new(:filesystem, :blocks, :blocks_quota, :blocks_limit, :blocks_grace, :files, :files_quota, :files_limit, :fil
-
-  # Parse a string output from the `ps aux` command and return an array of
-  # AppProcess objects, one per process
-  def parse(output)
-    lines = output.strip.split("\n")
--    lines.map do |line|
--      AppProcess.new(*(line.split(" ", 11)))
-+    lines.drop(2).map do |line|
-+      Quota.new(*(line.split))
-    end
-  end
-
    -
    -

    After the changes part of the command.rb will look like this:

    -
    class Command
-  def to_s
-    "quota -spw"
-  end
-
-  Quota = Struct.new(:filesystem, :blocks, :blocks_quota, :blocks_limit, :blocks_grace, :files, :files_quota, :files_limit, :files_grace)
-
-  # Parse a string output from the `ps aux` command and return an array of
-  # AppProcess objects, one per process
-  def parse(output)
-    lines = output.strip.split("\n")
-    lines.drop(2).map do |line|
-      Quota.new(*(line.split))
-    end
-  end
-
    -
    -

    Now when we run the test they pass:

    -
    $ rake
-Run options: --seed 60317
-
-# Running:
-
-.
-
-Finished in 0.000966s, 1035.1494 runs/s, 6210.8963 assertions/s.
-
-1 runs, 6 assertions, 0 failures, 0 errors, 0 skips
-
    -
    -
    -
    -

    Update app.rb and view/index.html

    -

    Update app.rb:

    -
    helpers do
-  def title
--    "Passenger App Processes"
-+    "Quota"
-  end
-end
-
-# Define a route at the root '/' of the app.
-get '/' do
-  @command = Command.new
--  @processes, @error = @command.exec
-+  @quotas, @error = @command.exec
-
-  # Render the view
-  erb :index
-end
-
    -
    -

    In views/index.erb, replace the table with this:

    -
    <table class="table table-bordered">
-  <tr>
-    <th>Filesystem</th>
-    <th>Blocks</th>
-    <th>Blocks Quota</th>
-    <th>Blocks Limit</th>
-    <th>Blocks Grace</th>
-    <th>Files</th>
-    <th>Files Quota</th>
-    <th>Files Limit</th>
-    <th>Files Grace</th>
-  </tr>
-  <% @quotas.each do |quota| %>
-  <tr>
-    <td><%= quota.filesystem %></td>
-    <td><%= quota.blocks %></td>
-    <td><%= quota.blocks_quota %></td>
-    <td><%= quota.blocks_limit %></td>
-    <td><%= quota.blocks_grace %></td>
-    <td><%= quota.files %></td>
-    <td><%= quota.files_quota %></td>
-    <td><%= quota.files_limit %></td>
-    <td><%= quota.files_grace %></td>
-  </tr>
-  <% end %>
-</table>
-
    -
    -

    These changes should not require an app restart. Go to the launched app and reload the page -to see the changes.

    -
    -
    -
    -

    Brand App

    -

    The app is looking good, but the details page still shows the app title “Passenger App -Processes”. To change this and the icon, edit the manifest.yml:

    -
    -name: Passenger App Processes
--description: Display your running Passenger app processes in a table
-+name: Quota
-+description: Display quotas
-+icon: fa://hdd-o
-
    -
    - -
    -
    -

    Publish App

    -

    Publishing an app requires two steps:

    -
      -

    1. Updating the manifest.yml to specify the category and optionally subcategory, which indicates where in the dashboard menu the app appears.

      2. -

    2. Having an administrator checkout a copy of the production version to a directory under /var/www/ood/apps/sys.

      3. -
    -

    Steps:

    -
      -

    1. Add category to manifest so the app appears in the Files menu:

      -
      -
      name: Quota
-description: Display quotas
-icon: fa://hdd-o
-+category: Files
-+subcategory: Utilities
-
      -
      -
      -
      2. -

    2. Version these changes. Click Shell button on app details view, and then commit the changes:

      -
      -
      git add .
-git commit -m "update manifest for production"
-
-# if there is an external remote associated with this, push to that
-git push origin master
-
      -
      -
      -
      3. -

    3. As the admin, sudo copy or git clone this repo to production

      -
      -
      # as sudo on OnDemand host:
-cd /var/www/ood/apps/sys
-git clone /users/PZS0562/efranz/ondemand/dev/quota
-
      -
      -
      -
      4. -

    4. Reload the dashboard.

      5. -
    -
    -../../_images/app-dev-tutorial-ps-to-quota-published.png -

    Fig. 9 Every user can now launch the Quota from the Files menu.

    -
    -
    -

    Warning

    -

    Accessing this new app for the first time will cause your NGINX server to restart, -killing all websocket connections, which means resetting your active web-based OnDemand Shell sessions.

    -
    -
    - - - - - - -
    - - - - -
    - -
    -

    - © Copyright 2017-2024, Ohio Supercomputer Center - -

    -
    - -
    - - - - - - - -
    - - Documentation Versions - v: - - -
    -
    -
    Versions
    - -
    latest
    - -
    3.0
    - -
    2.0
    - -
    1.8
    - -
    1.7
    - -
    1.6
    - -
    1.5
    - -
    1.4
    - -
    1.3
    - -
    1.2
    - -
    1.1
    - -
    1.0
    - -
    develop
    - -
    -
    -
    On GitHub
    -
    - Website -
    -
    - Main Repo -
    -
    -
    - Theme provided by Read the Docs. -
    -
    - - - - - - - - - - \ No newline at end of file diff --git a/develop/tutorials/tutorials-passenger-apps/python-starter-app.html b/develop/tutorials/tutorials-passenger-apps/python-starter-app.html index ee6519d23..75457f93b 100644 --- a/develop/tutorials/tutorials-passenger-apps/python-starter-app.html +++ b/develop/tutorials/tutorials-passenger-apps/python-starter-app.html @@ -120,7 +120,7 @@
  • Install Other Interactive Apps
  • Tutorials: Interactive Apps
  • Tutorials: Passenger Apps
    • @@ -325,6 +326,58 @@

    Using the virtual environment +

    Publish App

    +

    Publishing an app requires two steps:

    +
      +

    1. Updating the manifest.yml to specify the category and optionally subcategory, which indicates where in the dashboard menu the app appears.

      2. +

    2. Having an administrator checkout a copy of the production version to a directory under /var/www/ood/apps/sys.

      3. +
    +

    Steps:

    +
      +

    1. Add category to manifest so the app appears in the Files menu:

      +
      +
      name: Quota
+description: Display quotas
+icon: fa://hdd-o
++category: Files
++subcategory: Utilities
+
      +
      +
      +
      2. +

    2. Version these changes. Click Shell button on app details view, and then commit the changes:

      +
      +
      git add .
+git commit -m "update manifest for production"
+
+# if there is an external remote associated with this, push to that
+git push origin master
+
      +
      +
      +
      3. +

    3. As the admin, sudo copy or git clone this repo to production

      +
      +
      # as sudo on OnDemand host:
+cd /var/www/ood/apps/sys
+git clone /users/PZS0562/efranz/ondemand/dev/quota
+
      +
      +
      +
      4. +

    4. Reload the dashboard.

      5. +
    +
    +../../_images/app-dev-tutorial-ps-to-quota-published.png +

    Fig. 9 Every user can now launch the Quota from the Files menu.

    +
    +
    +

    Warning

    +

    Accessing this new app for the first time will cause your NGINX server to restart, +killing all websocket connections, which means resetting your active web-based OnDemand Shell sessions.

    +
    + diff --git a/develop/tutorials/tutorials-passenger-apps/ruby-starter-app.html b/develop/tutorials/tutorials-passenger-apps/ruby-starter-app.html new file mode 100644 index 000000000..850dbefbb --- /dev/null +++ b/develop/tutorials/tutorials-passenger-apps/ruby-starter-app.html @@ -0,0 +1,428 @@ + + + + + + + + + + + Starter Ruby Application — Open OnDemand 3.1.0 documentation + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + +
    + + + +
    + + + + + +
    + +
    + + + + + + + + + + + + + + + + + +
    + + + + +
    +
    +
    +
    + +
    +

    Starter Ruby Application

    +

    This document walks through creating a hello world application in Ruby +with the Sinatra web framework.

    +
    +

    config.ru for Sinatra

    +

    The first thing we need for OnDemand to recognize this directory is a config.ru file. +For Sinatra this is the config.ru that you need.

    +
    # frozen_string_literal: true
+
+require_relative 'app'
+run App
+
    +
    +
    +
    +

    config.ru for Ruby on Rails

    +

    This document does not cover Ruby on Rails, but +this config.ru is given nonetheless for readers interested +in building Ruby apps based on Ruby on Rails.

    +
    # frozen_string_literal: true
+
+require_relative 'config/environment'
+
+run Rails.application
+Rails.application.load_server
+
    +
    +
    +
    +

    Install dependencies

    +

    The application won’t boot with just the config.ru, though it will try. +What you need now is to install the gems (the ruby dependencies).

    +

    We need a Gemfile to tell bundler (Ruby’s application for dependencies) +what gems to install. Here’s that file.

    +
    # frozen_string_literal: true
+
+source 'https://rubygems.org'
+
+gem 'sinatra'
+
    +
    +

    With the Gemfile written, we can now install the dependencies +into vendor/bundle. Issue these commands to do that.

    +
    bundle config path --local vendor/bundle
+bundle install
+
    +
    +
    +
    +

    Write the app.rb file

    +

    Still, the app will not boot at this point. The config.ru is looking +to load the app.rb file which does not exist yet.

    +

    The app.rb file that will actually import Sinatra and implement your routes. +Here’s the simplest version of this file returning Hello World on the root URL.

    +
    require 'sinatra/base'
+
+class App < Sinatra::Base
+  get '/' do
+    'Hello World'
+  end
+end
+
    +
    +
    +
    +

    Publish App

    +

    Publishing an app requires two steps:

    +
      +

    1. Updating the manifest.yml to specify the category and optionally subcategory, which indicates where in the dashboard menu the app appears.

      2. +

    2. Having an administrator checkout a copy of the production version to a directory under /var/www/ood/apps/sys.

      3. +
    +

    Steps:

    +
      +

    1. Add category to manifest so the app appears in the Files menu:

      +
      +
      name: Quota
+description: Display quotas
+icon: fa://hdd-o
++category: Files
++subcategory: Utilities
+
      +
      +
      +
      2. +

    2. Version these changes. Click Shell button on app details view, and then commit the changes:

      +
      +
      git add .
+git commit -m "update manifest for production"
+
+# if there is an external remote associated with this, push to that
+git push origin master
+
      +
      +
      +
      3. +

    3. As the admin, sudo copy or git clone this repo to production

      +
      +
      # as sudo on OnDemand host:
+cd /var/www/ood/apps/sys
+git clone /users/PZS0562/efranz/ondemand/dev/quota
+
      +
      +
      +
      4. +

    4. Reload the dashboard.

      5. +
    +
    +../../_images/app-dev-tutorial-ps-to-quota-published.png +

    Fig. 7 Every user can now launch the Quota from the Files menu.

    +
    +
    +

    Warning

    +

    Accessing this new app for the first time will cause your NGINX server to restart, +killing all websocket connections, which means resetting your active web-based OnDemand Shell sessions.

    +
    +
    +
    + + +
    + +
    +
    + + + + +
    + +
    +

    + © Copyright 2017-2024, Ohio Supercomputer Center + +

    +
    + +
    + +
    +
    + +
    + +
    +
    + + Documentation Versions + v: + + +
    +
    +
    Versions
    + +
    latest
    + +
    3.0
    + +
    2.0
    + +
    1.8
    + +
    1.7
    + +
    1.6
    + +
    1.5
    + +
    1.4
    + +
    1.3
    + +
    1.2
    + +
    1.1
    + +
    1.0
    + +
    develop
    + +
    +
    +
    On GitHub
    +
    + Website +
    +
    + Main Repo +
    +
    +
    + Theme provided by Read the Docs. +
    +
    + + + + + + + + + + \ No newline at end of file