pytest-action.yaml

name: Run pytest on pull request to develop

# runs on every pull request to develop
on:
  pull_request:
    branches:
      - develop
# runs on version 20.04 of ubuntu
jobs:
  pytest-coverage-comment:
    runs-on: ubuntu-20.04
    steps:

# 1) Checkout the code
      - uses: actions/checkout@v3
# 2) Removing PyDoop from the requirements.txt
      - name: Remove pydoop requirements.txt
        shell: bash -l {0}
        run: |
          awk '!/pydoop.*/' requirements.txt> temp && mv temp requirements.txt
# 3) Set up Python
      - name: Set up Python 3.10
        uses: actions/setup-python@v5
        with:
          python-version: '3.10'
# 4) Install dependencies from requirements.txt
      - name: Install dependencies
        run: pip install -r requirements.txt
# 5) Run pytest to run all tests in the tests folder!
      - name: Use coverage to run pytest
      # Specify shell to run the command in
        working-directory: ${{ github.workspace }}
        shell: bash -l {0}
        run: |
          coverage run --branch --source=./src --omit=src/utils/hdfs_mods.py,src/utils/wrappers.py,src/utils/runlog.py,src/_version.py,src/pipeline.py,src/*_main.py \
              -m pytest -ra ./tests --junitxml=junit_result.xml --ignore=tests/test_utils/test_hdfs_mods.py && coverage xml \
              -o python_coverage.xml && coverage report -m --fail-under=10
# 6) Get the coverage report in to the pull request comments
      - name: Pytest coverage comment
        uses: MishaKav/pytest-coverage-comment@main
        with:
          title: Detailed Coverage Report
          badge-title: Percentage Coverage for this PR
          pytest-xml-coverage-path: ./python_coverage.xml
          coverage-path-prefix: src/
          junitxml-title: Summary of tests
          junitxml-path: ./junit_result.xml