From c8c3fa632fe577d8d4963a68437b9b5c8bbc221f Mon Sep 17 00:00:00 2001
From: schuemie <schuemie@ohdsi.org>
Date: Tue, 29 Oct 2024 08:24:20 +0100
Subject: [PATCH] Using codecov action to upload covr results

---
 .github/workflows/R_CMD_check_Hades.yaml | 16 +++++++++++++++-
 1 file changed, 15 insertions(+), 1 deletion(-)

diff --git a/.github/workflows/R_CMD_check_Hades.yaml b/.github/workflows/R_CMD_check_Hades.yaml
index 680290e..306c915 100644
--- a/.github/workflows/R_CMD_check_Hades.yaml
+++ b/.github/workflows/R_CMD_check_Hades.yaml
@@ -99,9 +99,23 @@ jobs:
         
       - name: Test coverage
         if: runner.os == 'Linux'
-        run: covr::codecov(token = "${{ secrets.CODECOV_TOKEN }}")
+        run: |
+          cov <- covr::package_coverage(
+            quiet = FALSE,
+            clean = FALSE,
+            install_path = file.path(normalizePath(Sys.getenv("RUNNER_TEMP"), winslash = "/"), "package")
+          )
+          covr::to_cobertura(cov)
         shell: Rscript {0}
 
+      - uses: codecov/codecov-action@v4
+        if: runner.os == 'Linux'
+        with:
+          file: ./cobertura.xml
+          plugin: noop
+          disable_search: true
+          token: ${{ secrets.CODECOV_TOKEN }}
+
   Release:
     needs: R-CMD-Check