From 87cf6db3f4cc943c4c012eaf98ec82fff0c63103 Mon Sep 17 00:00:00 2001 From: egillax Date: Mon, 15 Apr 2024 17:03:42 +0000 Subject: [PATCH] =?UTF-8?q?Deploying=20to=20gh-pages=20from=20@=20OHDSI/Pa?= =?UTF-8?q?tientLevelPrediction@f555fa7348b363bf11b649cd0158aa8aa0b3bd56?= =?UTF-8?q?=20=F0=9F=9A=80?= MIME-Version: 1.0 Content-Type: text/plain; charset=UTF-8 Content-Transfer-Encoding: 8bit --- .../AddingCustomFeatureEngineering.html | 8 +++--- dev/articles/AddingCustomModels.html | 8 +++--- dev/articles/AddingCustomSamples.html | 8 +++--- dev/articles/AddingCustomSplitting.html | 8 +++--- dev/articles/BenchmarkTasks.html | 8 +++--- dev/articles/BestPractices.html | 8 +++--- .../BuildingMultiplePredictiveModels.html | 8 +++--- dev/articles/BuildingPredictiveModels.html | 27 ++++++++++--------- dev/articles/ConstrainedPredictors.html | 8 +++--- dev/articles/CreatingLearningCurves.html | 8 +++--- dev/articles/CreatingNetworkStudies.html | 8 +++--- dev/articles/InstallationGuide.html | 8 +++--- dev/articles/Videos.html | 8 +++--- dev/articles/index.html | 6 ++--- dev/authors.html | 8 +++--- dev/index.html | 18 +++++-------- dev/news/index.html | 18 ++++++++++--- dev/pkgdown.yml | 4 +-- dev/reference/MapIds.html | 6 ++--- dev/reference/PatientLevelPrediction.html | 6 ++--- dev/reference/accuracy.html | 6 ++--- dev/reference/addDiagnosePlpToDatabase.html | 6 ++--- .../addMultipleDiagnosePlpToDatabase.html | 6 ++--- .../addMultipleRunPlpToDatabase.html | 6 ++--- dev/reference/addRunPlpToDatabase.html | 6 ++--- dev/reference/averagePrecision.html | 6 ++--- dev/reference/brierScore.html | 6 ++--- dev/reference/calibrationLine.html | 6 ++--- dev/reference/computeAuc.html | 6 ++--- dev/reference/computeGridPerformance.html | 6 ++--- dev/reference/configurePython.html | 6 ++--- dev/reference/covariateSummary.html | 6 ++--- .../createCohortCovariateSettings.html | 6 ++--- dev/reference/createDatabaseDetails.html | 6 ++--- dev/reference/createDatabaseList.html | 6 ++--- .../createDatabaseSchemaSettings.html | 6 ++--- .../createDefaultExecuteSettings.html | 6 ++--- dev/reference/createDefaultSplitSetting.html | 11 +++----- dev/reference/createExecuteSettings.html | 6 ++--- .../createFeatureEngineeringSettings.html | 6 ++--- dev/reference/createLearningCurve.html | 6 ++--- dev/reference/createLogSettings.html | 6 ++--- dev/reference/createModelDesign.html | 6 ++--- dev/reference/createPlpResultTables.html | 6 ++--- dev/reference/createPreprocessSettings.html | 6 ++--- .../createRandomForestFeatureSelection.html | 6 ++--- .../createRestrictPlpDataSettings.html | 6 ++--- dev/reference/createSampleSettings.html | 11 +++----- dev/reference/createSplineSettings.html | 6 ++--- .../createStratifiedImputationSettings.html | 6 ++--- dev/reference/createStudyPopulation.html | 6 ++--- .../createStudyPopulationSettings.html | 6 ++--- dev/reference/createTempModelLoc.html | 6 ++--- .../createUnivariateFeatureSelection.html | 6 ++--- dev/reference/createValidationSettings.html | 6 ++--- dev/reference/diagnoseMultiplePlp.html | 6 ++--- dev/reference/diagnosePlp.html | 6 ++--- dev/reference/diagnosticOddsRatio.html | 6 ++--- dev/reference/evaluatePlp.html | 6 ++--- dev/reference/externalValidateDbPlp.html | 6 ++--- dev/reference/extractDatabaseToCsv.html | 6 ++--- dev/reference/f1Score.html | 6 ++--- dev/reference/falseDiscoveryRate.html | 6 ++--- dev/reference/falseNegativeRate.html | 6 ++--- dev/reference/falseOmissionRate.html | 6 ++--- dev/reference/falsePositiveRate.html | 6 ++--- dev/reference/fitPlp.html | 6 ++--- dev/reference/getCalibrationSummary.html | 6 ++--- dev/reference/getCohortCovariateData.html | 6 ++--- dev/reference/getDemographicSummary.html | 6 ++--- dev/reference/getPlpData.html | 6 ++--- dev/reference/getPredictionDistribution.html | 6 ++--- .../getPredictionDistribution_binary.html | 6 ++--- dev/reference/getThresholdSummary.html | 6 ++--- dev/reference/getThresholdSummary_binary.html | 6 ++--- dev/reference/ici.html | 11 +++----- dev/reference/index.html | 27 +++++++------------ dev/reference/insertCsvToDatabase.html | 6 ++--- .../insertModelDesignInDatabase.html | 6 ++--- dev/reference/insertResultsToSqlite.html | 6 ++--- dev/reference/listAppend.html | 6 ++--- dev/reference/listCartesian.html | 6 ++--- dev/reference/loadPlpAnalysesJson.html | 6 ++--- dev/reference/loadPlpData.html | 6 ++--- dev/reference/loadPlpModel.html | 6 ++--- dev/reference/loadPlpResult.html | 6 ++--- dev/reference/loadPlpShareable.html | 6 ++--- dev/reference/loadPrediction.html | 6 ++--- dev/reference/migrateDataModel.html | 6 ++--- dev/reference/modelBasedConcordance.html | 10 +++---- dev/reference/negativeLikelihoodRatio.html | 6 ++--- dev/reference/negativePredictiveValue.html | 6 ++--- dev/reference/outcomeSurvivalPlot.html | 6 ++--- dev/reference/pfi.html | 6 ++--- dev/reference/plotDemographicSummary.html | 6 ++--- dev/reference/plotF1Measure.html | 6 ++--- dev/reference/plotGeneralizability.html | 6 ++--- dev/reference/plotLearningCurve.html | 6 ++--- dev/reference/plotPlp.html | 6 ++--- dev/reference/plotPrecisionRecall.html | 6 ++--- dev/reference/plotPredictedPDF.html | 6 ++--- dev/reference/plotPredictionDistribution.html | 6 ++--- dev/reference/plotPreferencePDF.html | 11 +++----- dev/reference/plotSmoothCalibration.html | 10 +++---- dev/reference/plotSparseCalibration.html | 6 ++--- dev/reference/plotSparseCalibration2.html | 6 ++--- dev/reference/plotSparseRoc.html | 6 ++--- dev/reference/plotVariableScatterplot.html | 6 ++--- dev/reference/plpDataSimulationProfile.html | 6 ++--- dev/reference/positiveLikelihoodRatio.html | 6 ++--- dev/reference/positivePredictiveValue.html | 6 ++--- dev/reference/predictCyclops.html | 6 ++--- dev/reference/predictPlp.html | 6 ++--- dev/reference/preprocessData.html | 11 +++----- dev/reference/recalibratePlp.html | 6 ++--- dev/reference/recalibratePlpRefit.html | 6 ++--- dev/reference/runMultiplePlp.html | 6 ++--- dev/reference/runPlp.html | 6 ++--- dev/reference/savePlpAnalysesJson.html | 6 ++--- dev/reference/savePlpData.html | 6 ++--- dev/reference/savePlpModel.html | 6 ++--- dev/reference/savePlpResult.html | 6 ++--- dev/reference/savePlpShareable.html | 6 ++--- dev/reference/savePrediction.html | 6 ++--- dev/reference/sensitivity.html | 6 ++--- dev/reference/setAdaBoost.html | 6 ++--- dev/reference/setCoxModel.html | 6 ++--- dev/reference/setDecisionTree.html | 6 ++--- dev/reference/setGradientBoostingMachine.html | 6 ++--- .../setIterativeHardThresholding.html | 6 ++--- dev/reference/setKNN.html | 6 ++--- dev/reference/setLassoLogisticRegression.html | 6 ++--- dev/reference/setLightGBM.html | 6 ++--- dev/reference/setMLP.html | 6 ++--- dev/reference/setNaiveBayes.html | 6 ++--- dev/reference/setPythonEnvironment.html | 6 ++--- dev/reference/setRandomForest.html | 6 ++--- dev/reference/setSVM.html | 6 ++--- dev/reference/simulatePlpData.html | 6 ++--- dev/reference/sklearnFromJson.html | 6 ++--- dev/reference/sklearnToJson.html | 6 ++--- dev/reference/specificity.html | 6 ++--- dev/reference/splitData.html | 6 ++--- dev/reference/toSparseM.html | 6 ++--- dev/reference/validateMultiplePlp.html | 6 ++--- dev/reference/viewDatabaseResultPlp.html | 6 ++--- dev/reference/viewMultiplePlp.html | 6 ++--- dev/reference/viewPlp.html | 6 ++--- 148 files changed, 496 insertions(+), 515 deletions(-) diff --git a/dev/articles/AddingCustomFeatureEngineering.html b/dev/articles/AddingCustomFeatureEngineering.html index 7e6529de9..b7a3c55ae 100644 --- a/dev/articles/AddingCustomFeatureEngineering.html +++ b/dev/articles/AddingCustomFeatureEngineering.html @@ -6,7 +6,7 @@ Adding Custom Feature Engineering Functions • PatientLevelPrediction - + @@ -34,7 +34,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -146,7 +146,7 @@

Adding Custom Feature Engineering Functions

Jenna Reps, Egill Fridgeirsson

-

2024-04-04

+

2024-04-15

Source: vignettes/AddingCustomFeatureEngineering.Rmd @@ -375,7 +375,7 @@

Acknowledgments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/articles/AddingCustomModels.html b/dev/articles/AddingCustomModels.html index 4b01a0377..758012340 100644 --- a/dev/articles/AddingCustomModels.html +++ b/dev/articles/AddingCustomModels.html @@ -6,7 +6,7 @@ Adding Custom Patient-Level Prediction Algorithms • PatientLevelPrediction - + @@ -34,7 +34,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -147,7 +147,7 @@

Adding Custom Patient-Level Prediction

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

-

2024-04-04

+

2024-04-15

Source: vignettes/AddingCustomModels.Rmd @@ -759,7 +759,7 @@

Acknowledgments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/articles/AddingCustomSamples.html b/dev/articles/AddingCustomSamples.html index 027794bdf..f690c1b32 100644 --- a/dev/articles/AddingCustomSamples.html +++ b/dev/articles/AddingCustomSamples.html @@ -6,7 +6,7 @@ Adding Custom Sampling Functions • PatientLevelPrediction - + @@ -34,7 +34,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -145,7 +145,7 @@

Adding Custom Sampling Functions

Jenna Reps

-

2024-04-04

+

2024-04-15

Source: vignettes/AddingCustomSamples.Rmd @@ -346,7 +346,7 @@

Acknowledgments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/articles/AddingCustomSplitting.html b/dev/articles/AddingCustomSplitting.html index 64c898572..a66ffe848 100644 --- a/dev/articles/AddingCustomSplitting.html +++ b/dev/articles/AddingCustomSplitting.html @@ -6,7 +6,7 @@ Adding Custom Data Splitting Functions • PatientLevelPrediction - + @@ -34,7 +34,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -145,7 +145,7 @@

Adding Custom Data Splitting Functions

Jenna Reps

-

2024-04-04

+

2024-04-15

Source: vignettes/AddingCustomSplitting.Rmd @@ -312,7 +312,7 @@

Acknowledgments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/articles/BenchmarkTasks.html b/dev/articles/BenchmarkTasks.html index 9818e4514..f9fd5eccf 100644 --- a/dev/articles/BenchmarkTasks.html +++ b/dev/articles/BenchmarkTasks.html @@ -6,7 +6,7 @@ Benchmark Tasks • PatientLevelPrediction - + @@ -34,7 +34,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -146,7 +146,7 @@

Benchmark Tasks

Jenna Reps, Ross Williams, Peter R. Rijnbeek

-

2024-04-04

+

2024-04-15

Source: vignettes/BenchmarkTasks.Rmd @@ -443,7 +443,7 @@

Benchmark Tasks For

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/articles/BestPractices.html b/dev/articles/BestPractices.html index cd3bc4795..6af7a80f0 100644 --- a/dev/articles/BestPractices.html +++ b/dev/articles/BestPractices.html @@ -6,7 +6,7 @@ Best Practice Research • PatientLevelPrediction - + @@ -34,7 +34,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -146,7 +146,7 @@

Best Practice Research

Jenna Reps, Peter R. Rijnbeek

-

2024-04-04

+

2024-04-15

Source: vignettes/BestPractices.rmd @@ -383,7 +383,7 @@

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/articles/BuildingMultiplePredictiveModels.html b/dev/articles/BuildingMultiplePredictiveModels.html index c201b2fe0..7adf9140e 100644 --- a/dev/articles/BuildingMultiplePredictiveModels.html +++ b/dev/articles/BuildingMultiplePredictiveModels.html @@ -6,7 +6,7 @@ Automatically Build Multiple Patient-Level Predictive Models • PatientLevelPrediction - + @@ -34,7 +34,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -147,7 +147,7 @@

Automatically Build Multiple Patient-Level

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

-

2024-04-04

+

2024-04-15

Source: vignettes/BuildingMultiplePredictiveModels.Rmd @@ -546,7 +546,7 @@

Acknowledgments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/articles/BuildingPredictiveModels.html b/dev/articles/BuildingPredictiveModels.html index 5becb7976..9ee4d9936 100644 --- a/dev/articles/BuildingPredictiveModels.html +++ b/dev/articles/BuildingPredictiveModels.html @@ -6,7 +6,7 @@ Building patient-level predictive models • PatientLevelPrediction - + @@ -34,7 +34,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -146,7 +146,7 @@

Building patient-level predictive models

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

-

2024-04-04

+

2024-04-15

Source: vignettes/BuildingPredictiveModels.Rmd @@ -875,15 +875,16 @@

Custom cohorts

If all went well, we now have a table with the events of interest. We can see how many events per type:

-
-  sql <- paste("SELECT cohort_definition_id, COUNT(*) AS count",
-  "FROM @cohortsDatabaseSchema.AFibStrokeCohort",
-  "GROUP BY cohort_definition_id")
-  sql <- renderSql(sql, cohortsDatabaseSchema = cohortsDatabaseSchema)$sql
-  sql <- translateSql(sql, targetDialect = connectionDetails$dbms)$sql
-  
-  querySql(connection, sql)
-

{r echo=FALSE,message=FALSE} data.frame(cohort_definition_id = c(1, 2),count = c(527616, 221555))

+
  sql <- paste("SELECT cohort_definition_id, COUNT(*) AS count",
+  "FROM @cohortsDatabaseSchema.AFibStrokeCohort",
+  "GROUP BY cohort_definition_id")
+  sql <- renderSql(sql, cohortsDatabaseSchema = cohortsDatabaseSchema)$sql
+  sql <- translateSql(sql, targetDialect = connectionDetails$dbms)$sql
+  
+  querySql(connection, sql)
+  ```
+  ```{r echo=FALSE,message=FALSE}
+  data.frame(cohort_definition_id = c(1, 2),count = c(527616, 221555))

Study script creation @@ -2260,7 +2261,7 @@

Appendi

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/articles/ConstrainedPredictors.html b/dev/articles/ConstrainedPredictors.html index 158a41d95..a8b461964 100644 --- a/dev/articles/ConstrainedPredictors.html +++ b/dev/articles/ConstrainedPredictors.html @@ -6,7 +6,7 @@ Constrained predictors • PatientLevelPrediction - + @@ -34,7 +34,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999

@@ -145,7 +145,7 @@

Constrained predictors

Jenna Reps

-

2024-04-04

+

2024-04-15

Source: vignettes/ConstrainedPredictors.Rmd @@ -930,7 +930,7 @@

The full set of predictor phenotyp

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/articles/CreatingLearningCurves.html b/dev/articles/CreatingLearningCurves.html index 8c745f7de..a02903ca1 100644 --- a/dev/articles/CreatingLearningCurves.html +++ b/dev/articles/CreatingLearningCurves.html @@ -6,7 +6,7 @@ Creating Learning Curves • PatientLevelPrediction - + @@ -34,7 +34,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -146,7 +146,7 @@

Creating Learning Curves

Luis H. John, Jenna M. Reps, Peter R. Rijnbeek

-

2024-04-04

+

2024-04-15

Source: vignettes/CreatingLearningCurves.Rmd @@ -412,7 +412,7 @@

Acknowledgments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/articles/CreatingNetworkStudies.html b/dev/articles/CreatingNetworkStudies.html index af6bf0643..a7026c2b5 100644 --- a/dev/articles/CreatingNetworkStudies.html +++ b/dev/articles/CreatingNetworkStudies.html @@ -6,7 +6,7 @@ Making patient-level predictive network study packages • PatientLevelPrediction - + @@ -34,7 +34,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -147,7 +147,7 @@

Making patient-level predictive network study

Jenna Reps, Martijn J. Schuemie, Patrick B. Ryan, Peter R. Rijnbeek

-

2024-04-04

+

2024-04-15

Source: vignettes/CreatingNetworkStudies.Rmd @@ -280,7 +280,7 @@

Package Skeleton - File Structure

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/articles/InstallationGuide.html b/dev/articles/InstallationGuide.html index 1e444cfc8..f83aecd67 100644 --- a/dev/articles/InstallationGuide.html +++ b/dev/articles/InstallationGuide.html @@ -6,7 +6,7 @@ Patient-Level Prediction Installation Guide • PatientLevelPrediction - + @@ -34,7 +34,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -146,7 +146,7 @@

Patient-Level Prediction Installation Guide

Jenna Reps, Peter R. Rijnbeek, Egill Fridgeirsson

-

2024-04-04

+

2024-04-15

Source: vignettes/InstallationGuide.Rmd @@ -329,7 +329,7 @@

Acknowledgments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/articles/Videos.html b/dev/articles/Videos.html index d4a3a2bf7..c01cd2120 100644 --- a/dev/articles/Videos.html +++ b/dev/articles/Videos.html @@ -6,7 +6,7 @@ Demo Videos • PatientLevelPrediction - + @@ -34,7 +34,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -146,7 +146,7 @@

Demo Videos

Jenna Reps, Peter R. Rijnbeek

-

2024-04-04

+

2024-04-15

Source: vignettes/Videos.rmd @@ -294,7 +294,7 @@

Validating existing models

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/articles/index.html b/dev/articles/index.html index 38ee6c12e..a4c585826 100644 --- a/dev/articles/index.html +++ b/dev/articles/index.html @@ -1,5 +1,5 @@ -Articles • PatientLevelPredictionArticles • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -159,7 +159,7 @@

All vignettes

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/authors.html b/dev/authors.html index 27c8b8f48..a4658850d 100644 --- a/dev/authors.html +++ b/dev/authors.html @@ -1,5 +1,5 @@ -Authors and Citation • PatientLevelPredictionAuthors and Citation • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -117,7 +117,7 @@
-

Authors

+

Authors and Citation

@@ -181,7 +181,7 @@

Citation

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/index.html b/dev/index.html index 6b62ec363..36a1196e5 100644 --- a/dev/index.html +++ b/dev/index.html @@ -5,20 +5,14 @@ -Developing patient level prediction using data in the OMOP Common Data - Model • PatientLevelPrediction - +Developing patient level prediction using data in the OMOP Common Data Model • PatientLevelPrediction + - - + + Changelog • PatientLevelPredictionChangelog • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -120,6 +120,18 @@

Changelog

Source: NEWS.md +
+

PatientLevelPrediction 6.3.7

+

PatientLevelPrediction 6.3.6

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/pkgdown.yml b/dev/pkgdown.yml index a58176eaf..119999129 100644 --- a/dev/pkgdown.yml +++ b/dev/pkgdown.yml @@ -1,5 +1,5 @@ pandoc: 3.1.11 -pkgdown: 2.0.7 +pkgdown: 2.0.8 pkgdown_sha: ~ articles: AddingCustomFeatureEngineering: AddingCustomFeatureEngineering.html @@ -15,5 +15,5 @@ articles: CreatingNetworkStudies: CreatingNetworkStudies.html InstallationGuide: InstallationGuide.html Videos: Videos.html -last_built: 2024-04-04T14:59Z +last_built: 2024-04-15T17:02Z diff --git a/dev/reference/MapIds.html b/dev/reference/MapIds.html index 42205dc30..5d81cce1a 100644 --- a/dev/reference/MapIds.html +++ b/dev/reference/MapIds.html @@ -1,5 +1,5 @@ -Map covariate and row Ids so they start from 1 — MapIds • PatientLevelPredictionMap covariate and row Ids so they start from 1 — MapIds • PatientLevelPredictionPatientLevelPrediction — PatientLevelPrediction • PatientLevelPredictionPatientLevelPrediction — PatientLevelPrediction • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -155,7 +155,7 @@

Author

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/accuracy.html b/dev/reference/accuracy.html index f9494c30f..0a0c8295b 100644 --- a/dev/reference/accuracy.html +++ b/dev/reference/accuracy.html @@ -1,5 +1,5 @@ -Calculate the accuracy — accuracy • PatientLevelPredictionCalculate the accuracy — accuracy • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -170,7 +170,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/addDiagnosePlpToDatabase.html b/dev/reference/addDiagnosePlpToDatabase.html index aaba0f5b3..17540c0b8 100644 --- a/dev/reference/addDiagnosePlpToDatabase.html +++ b/dev/reference/addDiagnosePlpToDatabase.html @@ -1,5 +1,5 @@ -Insert a diagnostic result into a PLP result schema database — addDiagnosePlpToDatabase • PatientLevelPredictionInsert a diagnostic result into a PLP result schema database — addDiagnosePlpToDatabase • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -187,7 +187,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/addMultipleDiagnosePlpToDatabase.html b/dev/reference/addMultipleDiagnosePlpToDatabase.html index 989d0d3bc..49dc556a4 100644 --- a/dev/reference/addMultipleDiagnosePlpToDatabase.html +++ b/dev/reference/addMultipleDiagnosePlpToDatabase.html @@ -1,5 +1,5 @@ -Insert mutliple diagnosePlp results saved to a directory into a PLP result schema database — addMultipleDiagnosePlpToDatabase • PatientLevelPredictionInsert mutliple diagnosePlp results saved to a directory into a PLP result schema database — addMultipleDiagnosePlpToDatabase • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -182,7 +182,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/addMultipleRunPlpToDatabase.html b/dev/reference/addMultipleRunPlpToDatabase.html index 656072701..5369934ed 100644 --- a/dev/reference/addMultipleRunPlpToDatabase.html +++ b/dev/reference/addMultipleRunPlpToDatabase.html @@ -1,5 +1,5 @@ -Populate the PatientLevelPrediction results tables — addMultipleRunPlpToDatabase • PatientLevelPredictionPopulate the PatientLevelPrediction results tables — addMultipleRunPlpToDatabase • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -192,7 +192,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/addRunPlpToDatabase.html b/dev/reference/addRunPlpToDatabase.html index 55d9b44c3..f17b57eee 100644 --- a/dev/reference/addRunPlpToDatabase.html +++ b/dev/reference/addRunPlpToDatabase.html @@ -1,5 +1,5 @@ -Function to add the run plp (development or validation) to database — addRunPlpToDatabase • PatientLevelPredictionFunction to add the run plp (development or validation) to database — addRunPlpToDatabase • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -187,7 +187,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/averagePrecision.html b/dev/reference/averagePrecision.html index c1676c1d9..778482b13 100644 --- a/dev/reference/averagePrecision.html +++ b/dev/reference/averagePrecision.html @@ -1,5 +1,5 @@ -Calculate the average precision — averagePrecision • PatientLevelPredictionCalculate the average precision — averagePrecision • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -158,7 +158,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/brierScore.html b/dev/reference/brierScore.html index 27cc3a8f3..f64f5aa9e 100644 --- a/dev/reference/brierScore.html +++ b/dev/reference/brierScore.html @@ -1,5 +1,5 @@ -brierScore — brierScore • PatientLevelPredictionbrierScore — brierScore • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -158,7 +158,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/calibrationLine.html b/dev/reference/calibrationLine.html index ed656dbae..ac445c6b6 100644 --- a/dev/reference/calibrationLine.html +++ b/dev/reference/calibrationLine.html @@ -1,5 +1,5 @@ -calibrationLine — calibrationLine • PatientLevelPredictioncalibrationLine — calibrationLine • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -156,7 +156,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/computeAuc.html b/dev/reference/computeAuc.html index 858eacaf3..5047117c5 100644 --- a/dev/reference/computeAuc.html +++ b/dev/reference/computeAuc.html @@ -1,5 +1,5 @@ -Compute the area under the ROC curve — computeAuc • PatientLevelPredictionCompute the area under the ROC curve — computeAuc • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -158,7 +158,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/computeGridPerformance.html b/dev/reference/computeGridPerformance.html index 69aa1c50e..606851596 100644 --- a/dev/reference/computeGridPerformance.html +++ b/dev/reference/computeGridPerformance.html @@ -1,5 +1,5 @@ -Computes grid performance with a specified performance function — computeGridPerformance • PatientLevelPredictionComputes grid performance with a specified performance function — computeGridPerformance • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -163,7 +163,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/configurePython.html b/dev/reference/configurePython.html index 28fb88e18..b92b8b04e 100644 --- a/dev/reference/configurePython.html +++ b/dev/reference/configurePython.html @@ -1,5 +1,5 @@ -Sets up a virtual environment to use for PLP (can be conda or python) — configurePython • PatientLevelPredictionSets up a virtual environment to use for PLP (can be conda or python) — configurePython • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -161,7 +161,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/covariateSummary.html b/dev/reference/covariateSummary.html index d2741c74c..72d58ba5b 100644 --- a/dev/reference/covariateSummary.html +++ b/dev/reference/covariateSummary.html @@ -1,5 +1,5 @@ -covariateSummary — covariateSummary • PatientLevelPredictioncovariateSummary — covariateSummary • PatientLevelPredictionExtracts covariates based on cohorts — createCohortCovariateSettings • PatientLevelPredictionExtracts covariates based on cohorts — createCohortCovariateSettings • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -213,7 +213,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createDatabaseDetails.html b/dev/reference/createDatabaseDetails.html index ca2fa817d..666f319a8 100644 --- a/dev/reference/createDatabaseDetails.html +++ b/dev/reference/createDatabaseDetails.html @@ -1,5 +1,5 @@ -Create a setting that holds the details about the cdmDatabase connection for data extraction — createDatabaseDetails • PatientLevelPredictionCreate a setting that holds the details about the cdmDatabase connection for data extraction — createDatabaseDetails • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -236,7 +236,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createDatabaseList.html b/dev/reference/createDatabaseList.html index 2253eea92..ce93168e9 100644 --- a/dev/reference/createDatabaseList.html +++ b/dev/reference/createDatabaseList.html @@ -1,5 +1,5 @@ -Create a list with the database details and database meta data entries — createDatabaseList • PatientLevelPredictionCreate a list with the database details and database meta data entries — createDatabaseList • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -166,7 +166,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createDatabaseSchemaSettings.html b/dev/reference/createDatabaseSchemaSettings.html index 22e9a8dd6..891499bbe 100644 --- a/dev/reference/createDatabaseSchemaSettings.html +++ b/dev/reference/createDatabaseSchemaSettings.html @@ -1,5 +1,5 @@ -Create the PatientLevelPrediction database result schema settings — createDatabaseSchemaSettings • PatientLevelPredictionCreate the PatientLevelPrediction database result schema settings — createDatabaseSchemaSettings • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -195,7 +195,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createDefaultExecuteSettings.html b/dev/reference/createDefaultExecuteSettings.html index 9471b3e4d..a0b37908d 100644 --- a/dev/reference/createDefaultExecuteSettings.html +++ b/dev/reference/createDefaultExecuteSettings.html @@ -1,5 +1,5 @@ -Creates default list of settings specifying what parts of runPlp to execute — createDefaultExecuteSettings • PatientLevelPredictionCreates default list of settings specifying what parts of runPlp to execute — createDefaultExecuteSettings • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -152,7 +152,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createDefaultSplitSetting.html b/dev/reference/createDefaultSplitSetting.html index 7592b1df3..331bc5879 100644 --- a/dev/reference/createDefaultSplitSetting.html +++ b/dev/reference/createDefaultSplitSetting.html @@ -1,7 +1,5 @@ -Create the settings for defining how the plpData are split into test/validation/train sets using -default splitting functions (either random stratified by outcome, time or subject splitting). — createDefaultSplitSetting • PatientLevelPredictionCreate the settings for defining how the plpData are split into test/validation/train sets using default splitting functions (either random stratified by outcome, time or subject splitting). — createDefaultSplitSetting • PatientLevelPredictionCreates list of settings specifying what parts of runPlp to execute — createExecuteSettings • PatientLevelPredictionCreates list of settings specifying what parts of runPlp to execute — createExecuteSettings • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -185,7 +185,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createFeatureEngineeringSettings.html b/dev/reference/createFeatureEngineeringSettings.html index 47df2f5b5..696176e23 100644 --- a/dev/reference/createFeatureEngineeringSettings.html +++ b/dev/reference/createFeatureEngineeringSettings.html @@ -1,5 +1,5 @@ -Create the settings for defining any feature engineering that will be done — createFeatureEngineeringSettings • PatientLevelPredictionCreate the settings for defining any feature engineering that will be done — createFeatureEngineeringSettings • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -161,7 +161,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createLearningCurve.html b/dev/reference/createLearningCurve.html index 6f22632af..0c04d5abc 100644 --- a/dev/reference/createLearningCurve.html +++ b/dev/reference/createLearningCurve.html @@ -1,5 +1,5 @@ -createLearningCurve — createLearningCurve • PatientLevelPredictioncreateLearningCurve — createLearningCurve • PatientLevelPredictionCreate the settings for logging the progression of the analysis — createLogSettings • PatientLevelPredictionCreate the settings for logging the progression of the analysis — createLogSettings • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -174,7 +174,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createModelDesign.html b/dev/reference/createModelDesign.html index 2befb85fd..b8066701b 100644 --- a/dev/reference/createModelDesign.html +++ b/dev/reference/createModelDesign.html @@ -1,5 +1,5 @@ -Specify settings for deceloping a single model — createModelDesign • PatientLevelPredictionSpecify settings for deceloping a single model — createModelDesign • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -211,7 +211,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createPlpResultTables.html b/dev/reference/createPlpResultTables.html index eb00fd094..c4ffe6387 100644 --- a/dev/reference/createPlpResultTables.html +++ b/dev/reference/createPlpResultTables.html @@ -1,5 +1,5 @@ -Create the results tables to store PatientLevelPrediction models and results into a database — createPlpResultTables • PatientLevelPredictionCreate the results tables to store PatientLevelPrediction models and results into a database — createPlpResultTables • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -195,7 +195,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createPreprocessSettings.html b/dev/reference/createPreprocessSettings.html index 968b24da6..0beab3aa0 100644 --- a/dev/reference/createPreprocessSettings.html +++ b/dev/reference/createPreprocessSettings.html @@ -1,5 +1,5 @@ -Create the settings for preprocessing the trainData. — createPreprocessSettings • PatientLevelPredictionCreate the settings for preprocessing the trainData. — createPreprocessSettings • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -172,7 +172,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createRandomForestFeatureSelection.html b/dev/reference/createRandomForestFeatureSelection.html index 94dc4d683..a2f701533 100644 --- a/dev/reference/createRandomForestFeatureSelection.html +++ b/dev/reference/createRandomForestFeatureSelection.html @@ -1,5 +1,5 @@ -Create the settings for random foreat based feature selection — createRandomForestFeatureSelection • PatientLevelPredictionCreate the settings for random foreat based feature selection — createRandomForestFeatureSelection • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -164,7 +164,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createRestrictPlpDataSettings.html b/dev/reference/createRestrictPlpDataSettings.html index b84200f2b..1661f8747 100644 --- a/dev/reference/createRestrictPlpDataSettings.html +++ b/dev/reference/createRestrictPlpDataSettings.html @@ -1,5 +1,5 @@ -createRestrictPlpDataSettings define extra restriction settings when calling getPlpData — createRestrictPlpDataSettings • PatientLevelPredictioncreateRestrictPlpDataSettings define extra restriction settings when calling getPlpData — createRestrictPlpDataSettings • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -189,7 +189,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createSampleSettings.html b/dev/reference/createSampleSettings.html index f5fa2bc0c..e82472c36 100644 --- a/dev/reference/createSampleSettings.html +++ b/dev/reference/createSampleSettings.html @@ -1,7 +1,5 @@ -Create the settings for defining how the trainData from splitData are sampled using -default sample functions. — createSampleSettings • PatientLevelPredictionCreate the settings for defining how the trainData from splitData are sampled using default sample functions. — createSampleSettings • PatientLevelPredictionCreate the settings for adding a spline for continuous variables — createSplineSettings • PatientLevelPredictionCreate the settings for adding a spline for continuous variables — createSplineSettings • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -168,7 +168,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createStratifiedImputationSettings.html b/dev/reference/createStratifiedImputationSettings.html index 5f3aa809c..19af636d8 100644 --- a/dev/reference/createStratifiedImputationSettings.html +++ b/dev/reference/createStratifiedImputationSettings.html @@ -1,5 +1,5 @@ -Create the settings for adding a spline for continuous variables — createStratifiedImputationSettings • PatientLevelPredictionCreate the settings for adding a spline for continuous variables — createStratifiedImputationSettings • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -164,7 +164,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createStudyPopulation.html b/dev/reference/createStudyPopulation.html index 89d01a079..cec4af39f 100644 --- a/dev/reference/createStudyPopulation.html +++ b/dev/reference/createStudyPopulation.html @@ -1,5 +1,5 @@ -Create a study population — createStudyPopulation • PatientLevelPredictionCreate a study population — createStudyPopulation • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -196,7 +196,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createStudyPopulationSettings.html b/dev/reference/createStudyPopulationSettings.html index 63532eb04..6a5fc2135 100644 --- a/dev/reference/createStudyPopulationSettings.html +++ b/dev/reference/createStudyPopulationSettings.html @@ -1,5 +1,5 @@ -create the study population settings — createStudyPopulationSettings • PatientLevelPredictioncreate the study population settings — createStudyPopulationSettings • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -226,7 +226,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createTempModelLoc.html b/dev/reference/createTempModelLoc.html index aabaf15b0..af0515a1f 100644 --- a/dev/reference/createTempModelLoc.html +++ b/dev/reference/createTempModelLoc.html @@ -1,5 +1,5 @@ -Create a temporary model location — createTempModelLoc • PatientLevelPredictionCreate a temporary model location — createTempModelLoc • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -142,7 +142,7 @@

Create a temporary model location

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createUnivariateFeatureSelection.html b/dev/reference/createUnivariateFeatureSelection.html index f0e67cb3b..1a5bae89d 100644 --- a/dev/reference/createUnivariateFeatureSelection.html +++ b/dev/reference/createUnivariateFeatureSelection.html @@ -1,5 +1,5 @@ -Create the settings for defining any feature selection that will be done — createUnivariateFeatureSelection • PatientLevelPredictionCreate the settings for defining any feature selection that will be done — createUnivariateFeatureSelection • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -160,7 +160,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/createValidationSettings.html b/dev/reference/createValidationSettings.html index c71d2065f..36993661e 100644 --- a/dev/reference/createValidationSettings.html +++ b/dev/reference/createValidationSettings.html @@ -1,5 +1,5 @@ -createValidationSettings define optional settings for performing external validation — createValidationSettings • PatientLevelPredictioncreateValidationSettings define optional settings for performing external validation — createValidationSettings • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -162,7 +162,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/diagnoseMultiplePlp.html b/dev/reference/diagnoseMultiplePlp.html index b2a093ce3..0ea5f0867 100644 --- a/dev/reference/diagnoseMultiplePlp.html +++ b/dev/reference/diagnoseMultiplePlp.html @@ -1,5 +1,5 @@ -Run a list of predictions diagnoses — diagnoseMultiplePlp • PatientLevelPredictionRun a list of predictions diagnoses — diagnoseMultiplePlp • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -183,7 +183,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/diagnosePlp.html b/dev/reference/diagnosePlp.html index d34d76e8b..42fcd047d 100644 --- a/dev/reference/diagnosePlp.html +++ b/dev/reference/diagnosePlp.html @@ -1,5 +1,5 @@ -diagnostic - Investigates the prediction problem settings - use before training a model — diagnosePlp • PatientLevelPredictiondiagnostic - Investigates the prediction problem settings - use before training a model — diagnosePlp • PatientLevelPredictionCalculate the diagnostic odds ratio — diagnosticOddsRatio • PatientLevelPredictionCalculate the diagnostic odds ratio — diagnosticOddsRatio • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -170,7 +170,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/evaluatePlp.html b/dev/reference/evaluatePlp.html index 454d412d1..3b9e74ae3 100644 --- a/dev/reference/evaluatePlp.html +++ b/dev/reference/evaluatePlp.html @@ -1,5 +1,5 @@ -evaluatePlp — evaluatePlp • PatientLevelPredictionevaluatePlp — evaluatePlp • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -163,7 +163,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/externalValidateDbPlp.html b/dev/reference/externalValidateDbPlp.html index 7fdc90785..ddad45d7b 100644 --- a/dev/reference/externalValidateDbPlp.html +++ b/dev/reference/externalValidateDbPlp.html @@ -1,5 +1,5 @@ -externalValidateDbPlp - Validate a model on new databases — externalValidateDbPlp • PatientLevelPredictionexternalValidateDbPlp - Validate a model on new databases — externalValidateDbPlp • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -187,7 +187,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/extractDatabaseToCsv.html b/dev/reference/extractDatabaseToCsv.html index 2d320b93e..da80a9e5d 100644 --- a/dev/reference/extractDatabaseToCsv.html +++ b/dev/reference/extractDatabaseToCsv.html @@ -1,5 +1,5 @@ -Exports all the results from a database into csv files — extractDatabaseToCsv • PatientLevelPredictionExports all the results from a database into csv files — extractDatabaseToCsv • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -184,7 +184,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/f1Score.html b/dev/reference/f1Score.html index 1762087f4..4b533773c 100644 --- a/dev/reference/f1Score.html +++ b/dev/reference/f1Score.html @@ -1,5 +1,5 @@ -Calculate the f1Score — f1Score • PatientLevelPredictionCalculate the f1Score — f1Score • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -170,7 +170,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/falseDiscoveryRate.html b/dev/reference/falseDiscoveryRate.html index 128b84da6..9f2d41412 100644 --- a/dev/reference/falseDiscoveryRate.html +++ b/dev/reference/falseDiscoveryRate.html @@ -1,5 +1,5 @@ -Calculate the falseDiscoveryRate — falseDiscoveryRate • PatientLevelPredictionCalculate the falseDiscoveryRate — falseDiscoveryRate • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -170,7 +170,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/falseNegativeRate.html b/dev/reference/falseNegativeRate.html index b3094dc52..991543c44 100644 --- a/dev/reference/falseNegativeRate.html +++ b/dev/reference/falseNegativeRate.html @@ -1,5 +1,5 @@ -Calculate the falseNegativeRate — falseNegativeRate • PatientLevelPredictionCalculate the falseNegativeRate — falseNegativeRate • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -170,7 +170,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/falseOmissionRate.html b/dev/reference/falseOmissionRate.html index a18274e71..f6add6582 100644 --- a/dev/reference/falseOmissionRate.html +++ b/dev/reference/falseOmissionRate.html @@ -1,5 +1,5 @@ -Calculate the falseOmissionRate — falseOmissionRate • PatientLevelPredictionCalculate the falseOmissionRate — falseOmissionRate • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -170,7 +170,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/falsePositiveRate.html b/dev/reference/falsePositiveRate.html index 917cbed8e..d6430bdef 100644 --- a/dev/reference/falsePositiveRate.html +++ b/dev/reference/falsePositiveRate.html @@ -1,5 +1,5 @@ -Calculate the falsePositiveRate — falsePositiveRate • PatientLevelPredictionCalculate the falsePositiveRate — falsePositiveRate • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -170,7 +170,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/fitPlp.html b/dev/reference/fitPlp.html index dab82e773..4706aa512 100644 --- a/dev/reference/fitPlp.html +++ b/dev/reference/fitPlp.html @@ -1,5 +1,5 @@ -fitPlp — fitPlp • PatientLevelPredictionfitPlp — fitPlp • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -199,7 +199,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/getCalibrationSummary.html b/dev/reference/getCalibrationSummary.html index 7d6dcd1d2..57724fa00 100644 --- a/dev/reference/getCalibrationSummary.html +++ b/dev/reference/getCalibrationSummary.html @@ -1,5 +1,5 @@ -Get a sparse summary of the calibration — getCalibrationSummary • PatientLevelPredictionGet a sparse summary of the calibration — getCalibrationSummary • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -183,7 +183,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/getCohortCovariateData.html b/dev/reference/getCohortCovariateData.html index b3181b183..d06b5ccda 100644 --- a/dev/reference/getCohortCovariateData.html +++ b/dev/reference/getCohortCovariateData.html @@ -1,5 +1,5 @@ -Extracts covariates based on cohorts — getCohortCovariateData • PatientLevelPredictionExtracts covariates based on cohorts — getCohortCovariateData • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -201,7 +201,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/getDemographicSummary.html b/dev/reference/getDemographicSummary.html index 373bae42f..7dc7582a0 100644 --- a/dev/reference/getDemographicSummary.html +++ b/dev/reference/getDemographicSummary.html @@ -1,5 +1,5 @@ -Get a calibration per age/gender groups — getDemographicSummary • PatientLevelPredictionGet a calibration per age/gender groups — getDemographicSummary • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -166,7 +166,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/getPlpData.html b/dev/reference/getPlpData.html index 8ca148b49..0cc51fe90 100644 --- a/dev/reference/getPlpData.html +++ b/dev/reference/getPlpData.html @@ -1,5 +1,5 @@ -Get the patient level prediction data from the server — getPlpData • PatientLevelPredictionGet the patient level prediction data from the server — getPlpData • PatientLevelPredictionCalculates the prediction distribution — getPredictionDistribution • PatientLevelPredictionCalculates the prediction distribution — getPredictionDistribution • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -171,7 +171,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/getPredictionDistribution_binary.html b/dev/reference/getPredictionDistribution_binary.html index 8cde3bfe6..f07e0a497 100644 --- a/dev/reference/getPredictionDistribution_binary.html +++ b/dev/reference/getPredictionDistribution_binary.html @@ -1,5 +1,5 @@ -Calculates the prediction distribution — getPredictionDistribution_binary • PatientLevelPredictionCalculates the prediction distribution — getPredictionDistribution_binary • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -167,7 +167,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/getThresholdSummary.html b/dev/reference/getThresholdSummary.html index f724b18f0..5555d2526 100644 --- a/dev/reference/getThresholdSummary.html +++ b/dev/reference/getThresholdSummary.html @@ -1,5 +1,5 @@ -Calculate all measures for sparse ROC — getThresholdSummary • PatientLevelPredictionCalculate all measures for sparse ROC — getThresholdSummary • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -167,7 +167,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/getThresholdSummary_binary.html b/dev/reference/getThresholdSummary_binary.html index 82ecc1e77..88875bec3 100644 --- a/dev/reference/getThresholdSummary_binary.html +++ b/dev/reference/getThresholdSummary_binary.html @@ -1,5 +1,5 @@ -Calculate all measures for sparse ROC when prediction is bianry classification — getThresholdSummary_binary • PatientLevelPredictionCalculate all measures for sparse ROC when prediction is bianry classification — getThresholdSummary_binary • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -167,7 +167,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/ici.html b/dev/reference/ici.html index 5c55cb434..54bfb91a9 100644 --- a/dev/reference/ici.html +++ b/dev/reference/ici.html @@ -1,7 +1,5 @@ -Calculate the Integrated Calibration Information from Austin and Steyerberg -https://onlinelibrary.wiley.com/doi/full/10.1002/sim.8281 — ici • PatientLevelPredictionCalculate the Integrated Calibration Information from Austin and Steyerberg https://onlinelibrary.wiley.com/doi/full/10.1002/sim.8281 — ici • PatientLevelPredictionFunction reference • PatientLevelPredictionFunction reference • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -158,13 +158,11 @@

Settings for designing a pre

createDefaultSplitSetting()

-

Create the settings for defining how the plpData are split into test/validation/train sets using -default splitting functions (either random stratified by outcome, time or subject splitting).

+

Create the settings for defining how the plpData are split into test/validation/train sets using default splitting functions (either random stratified by outcome, time or subject splitting).

createSampleSettings()

-

Create the settings for defining how the trainData from splitData are sampled using -default sample functions.

+

Create the settings for defining how the trainData from splitData are sampled using default sample functions.

createFeatureEngineeringSettings()

@@ -360,8 +358,7 @@

Individual pipeline functions preprocessData()

-

A function that wraps around FeatureExtraction::tidyCovariateData to normalise the data -and remove rare or redundant features

+

A function that wraps around FeatureExtraction::tidyCovariateData to normalise the data and remove rare or redundant features

fitPlp()

@@ -461,8 +458,7 @@

Plotting

plotSmoothCalibration()

-

Plot the smooth calibration as detailed in Calster et al. "A calibration heirarchy for risk models -was defined: from utopia to empirical data" (2016)

+

Plot the smooth calibration as detailed in Calster et al. "A calibration heirarchy for risk models was defined: from utopia to empirical data" (2016)

plotSparseCalibration()

@@ -494,8 +490,7 @@

Plotting

plotPreferencePDF()

-

Plot the preference score probability density function, showing prediction overlap between true and false cases -#'

+

Plot the preference score probability density function, showing prediction overlap between true and false cases #'

plotPredictionDistribution()

@@ -615,13 +610,11 @@

Evaluation measures

ici()

-

Calculate the Integrated Calibration Information from Austin and Steyerberg -https://onlinelibrary.wiley.com/doi/full/10.1002/sim.8281

+

Calculate the Integrated Calibration Information from Austin and Steyerberg https://onlinelibrary.wiley.com/doi/full/10.1002/sim.8281

modelBasedConcordance()

-

Calculate the model-based concordance, which is a calculation of the expected discrimination performance of a model under the assumption the model predicts the "TRUE" outcome -as detailed in van Klaveren et al. https://pubmed.ncbi.nlm.nih.gov/27251001/

+

Calculate the model-based concordance, which is a calculation of the expected discrimination performance of a model under the assumption the model predicts the "TRUE" outcome as detailed in van Klaveren et al. https://pubmed.ncbi.nlm.nih.gov/27251001/

negativeLikelihoodRatio()

@@ -739,7 +732,7 @@

Other functions -

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/insertCsvToDatabase.html b/dev/reference/insertCsvToDatabase.html index 81cef7e0b..ab6c186f7 100644 --- a/dev/reference/insertCsvToDatabase.html +++ b/dev/reference/insertCsvToDatabase.html @@ -1,5 +1,5 @@ -Function to insert results into a database from csvs — insertCsvToDatabase • PatientLevelPredictionFunction to insert results into a database from csvs — insertCsvToDatabase • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -180,7 +180,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/insertModelDesignInDatabase.html b/dev/reference/insertModelDesignInDatabase.html index 3f75ae479..91089c7a9 100644 --- a/dev/reference/insertModelDesignInDatabase.html +++ b/dev/reference/insertModelDesignInDatabase.html @@ -1,5 +1,5 @@ -Insert a model design into a PLP result schema database — insertModelDesignInDatabase • PatientLevelPredictionInsert a model design into a PLP result schema database — insertModelDesignInDatabase • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -177,7 +177,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/insertResultsToSqlite.html b/dev/reference/insertResultsToSqlite.html index e9333657c..b6ac365a7 100644 --- a/dev/reference/insertResultsToSqlite.html +++ b/dev/reference/insertResultsToSqlite.html @@ -1,5 +1,5 @@ -Create sqlite database with the results — insertResultsToSqlite • PatientLevelPredictionCreate sqlite database with the results — insertResultsToSqlite • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -175,7 +175,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/listAppend.html b/dev/reference/listAppend.html index c6d50c902..d4eedde92 100644 --- a/dev/reference/listAppend.html +++ b/dev/reference/listAppend.html @@ -1,5 +1,5 @@ -join two lists — listAppend • PatientLevelPredictionjoin two lists — listAppend • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -156,7 +156,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/listCartesian.html b/dev/reference/listCartesian.html index 3c9fa223a..475293649 100644 --- a/dev/reference/listCartesian.html +++ b/dev/reference/listCartesian.html @@ -1,5 +1,5 @@ -Cartesian product — listCartesian • PatientLevelPredictionCartesian product — listCartesian • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -154,7 +154,7 @@

Value

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/loadPlpAnalysesJson.html b/dev/reference/loadPlpAnalysesJson.html index b752e8cba..eaf77dabf 100644 --- a/dev/reference/loadPlpAnalysesJson.html +++ b/dev/reference/loadPlpAnalysesJson.html @@ -1,5 +1,5 @@ -Load the multiple prediction json settings from a file — loadPlpAnalysesJson • PatientLevelPredictionLoad the multiple prediction json settings from a file — loadPlpAnalysesJson • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -161,7 +161,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/loadPlpData.html b/dev/reference/loadPlpData.html index 2477a610a..2f6683da4 100644 --- a/dev/reference/loadPlpData.html +++ b/dev/reference/loadPlpData.html @@ -1,5 +1,5 @@ -Load the cohort data from a folder — loadPlpData • PatientLevelPredictionLoad the cohort data from a folder — loadPlpData • PatientLevelPredictionloads the plp model — loadPlpModel • PatientLevelPredictionloads the plp model — loadPlpModel • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -152,7 +152,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/loadPlpResult.html b/dev/reference/loadPlpResult.html index de0fa78f2..bfd2ea886 100644 --- a/dev/reference/loadPlpResult.html +++ b/dev/reference/loadPlpResult.html @@ -1,5 +1,5 @@ -Loads the evalaution dataframe — loadPlpResult • PatientLevelPredictionLoads the evalaution dataframe — loadPlpResult • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -152,7 +152,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/loadPlpShareable.html b/dev/reference/loadPlpShareable.html index 589d59a27..31e34d7b6 100644 --- a/dev/reference/loadPlpShareable.html +++ b/dev/reference/loadPlpShareable.html @@ -1,5 +1,5 @@ -Loads the plp result saved as json/csv files for transparent sharing — loadPlpShareable • PatientLevelPredictionLoads the plp result saved as json/csv files for transparent sharing — loadPlpShareable • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -152,7 +152,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/loadPrediction.html b/dev/reference/loadPrediction.html index b099967dd..83937ecbb 100644 --- a/dev/reference/loadPrediction.html +++ b/dev/reference/loadPrediction.html @@ -1,5 +1,5 @@ -Loads the prediciton dataframe to csv — loadPrediction • PatientLevelPredictionLoads the prediciton dataframe to csv — loadPrediction • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -152,7 +152,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/migrateDataModel.html b/dev/reference/migrateDataModel.html index ff960d9bb..43757489f 100644 --- a/dev/reference/migrateDataModel.html +++ b/dev/reference/migrateDataModel.html @@ -1,5 +1,5 @@ -Migrate Data model — migrateDataModel • PatientLevelPredictionMigrate Data model — migrateDataModel • PatientLevelPredictionCalculate the model-based concordance, which is a calculation of the expected discrimination performance of a model under the assumption the model predicts the "TRUE" outcome -as detailed in van Klaveren et al. https://pubmed.ncbi.nlm.nih.gov/27251001/ — modelBasedConcordance • PatientLevelPredictionCalculate the negativeLikelihoodRatio — negativeLikelihoodRatio • PatientLevelPredictionCalculate the negativeLikelihoodRatio — negativeLikelihoodRatio • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -170,7 +170,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/negativePredictiveValue.html b/dev/reference/negativePredictiveValue.html index 5269e8fca..7ae3bf730 100644 --- a/dev/reference/negativePredictiveValue.html +++ b/dev/reference/negativePredictiveValue.html @@ -1,5 +1,5 @@ -Calculate the negativePredictiveValue — negativePredictiveValue • PatientLevelPredictionCalculate the negativePredictiveValue — negativePredictiveValue • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -170,7 +170,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/outcomeSurvivalPlot.html b/dev/reference/outcomeSurvivalPlot.html index f6c7e4504..cd2a99717 100644 --- a/dev/reference/outcomeSurvivalPlot.html +++ b/dev/reference/outcomeSurvivalPlot.html @@ -1,5 +1,5 @@ -Plot the outcome incidence over time — outcomeSurvivalPlot • PatientLevelPredictionPlot the outcome incidence over time — outcomeSurvivalPlot • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -188,7 +188,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/pfi.html b/dev/reference/pfi.html index 7229a6d4b..7ea14a8a3 100644 --- a/dev/reference/pfi.html +++ b/dev/reference/pfi.html @@ -1,5 +1,5 @@ -pfi — pfi • PatientLevelPredictionpfi — pfi • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -196,7 +196,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/plotDemographicSummary.html b/dev/reference/plotDemographicSummary.html index 24d18d1f0..0d0b088a5 100644 --- a/dev/reference/plotDemographicSummary.html +++ b/dev/reference/plotDemographicSummary.html @@ -1,5 +1,5 @@ -Plot the Observed vs. expected incidence, by age and gender — plotDemographicSummary • PatientLevelPredictionPlot the Observed vs. expected incidence, by age and gender — plotDemographicSummary • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -179,7 +179,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/plotF1Measure.html b/dev/reference/plotF1Measure.html index 5f54fefe2..907911307 100644 --- a/dev/reference/plotF1Measure.html +++ b/dev/reference/plotF1Measure.html @@ -1,5 +1,5 @@ -Plot the F1 measure efficiency frontier using the sparse thresholdSummary data frame — plotF1Measure • PatientLevelPredictionPlot the F1 measure efficiency frontier using the sparse thresholdSummary data frame — plotF1Measure • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -178,7 +178,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/plotGeneralizability.html b/dev/reference/plotGeneralizability.html index f0d8987af..e7cc05051 100644 --- a/dev/reference/plotGeneralizability.html +++ b/dev/reference/plotGeneralizability.html @@ -1,5 +1,5 @@ -Plot the train/test generalizability diagnostic — plotGeneralizability • PatientLevelPredictionPlot the train/test generalizability diagnostic — plotGeneralizability • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -175,7 +175,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/plotLearningCurve.html b/dev/reference/plotLearningCurve.html index 094dac9c8..2abb58710 100644 --- a/dev/reference/plotLearningCurve.html +++ b/dev/reference/plotLearningCurve.html @@ -1,5 +1,5 @@ -plotLearningCurve — plotLearningCurve • PatientLevelPredictionplotLearningCurve — plotLearningCurve • PatientLevelPredictionPlot all the PatientLevelPrediction plots — plotPlp • PatientLevelPredictionPlot all the PatientLevelPrediction plots — plotPlp • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -167,7 +167,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/plotPrecisionRecall.html b/dev/reference/plotPrecisionRecall.html index f03145832..7d6a4796e 100644 --- a/dev/reference/plotPrecisionRecall.html +++ b/dev/reference/plotPrecisionRecall.html @@ -1,5 +1,5 @@ -Plot the precision-recall curve using the sparse thresholdSummary data frame — plotPrecisionRecall • PatientLevelPredictionPlot the precision-recall curve using the sparse thresholdSummary data frame — plotPrecisionRecall • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -178,7 +178,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/plotPredictedPDF.html b/dev/reference/plotPredictedPDF.html index ed592bb52..ec63b2451 100644 --- a/dev/reference/plotPredictedPDF.html +++ b/dev/reference/plotPredictedPDF.html @@ -1,5 +1,5 @@ -Plot the Predicted probability density function, showing prediction overlap between true and false cases — plotPredictedPDF • PatientLevelPredictionPlot the Predicted probability density function, showing prediction overlap between true and false cases — plotPredictedPDF • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -178,7 +178,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/plotPredictionDistribution.html b/dev/reference/plotPredictionDistribution.html index 9185ce3bf..07e12f7a9 100644 --- a/dev/reference/plotPredictionDistribution.html +++ b/dev/reference/plotPredictionDistribution.html @@ -1,5 +1,5 @@ -Plot the side-by-side boxplots of prediction distribution, by class#' — plotPredictionDistribution • PatientLevelPredictionPlot the side-by-side boxplots of prediction distribution, by class#' — plotPredictionDistribution • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -179,7 +179,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/plotPreferencePDF.html b/dev/reference/plotPreferencePDF.html index 37f85a9ed..7d8e68c95 100644 --- a/dev/reference/plotPreferencePDF.html +++ b/dev/reference/plotPreferencePDF.html @@ -1,7 +1,5 @@ -Plot the preference score probability density function, showing prediction overlap between true and false cases -#' — plotPreferencePDF • PatientLevelPredictionPlot the preference score probability density function, showing prediction overlap between true and false cases #' — plotPreferencePDF • PatientLevelPredictionPlot the smooth calibration as detailed in Calster et al. "A calibration heirarchy for risk models -was defined: from utopia to empirical data" (2016) — plotSmoothCalibration • PatientLevelPredictionPlot the calibration — plotSparseCalibration • PatientLevelPredictionPlot the calibration — plotSparseCalibration • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -179,7 +179,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/plotSparseCalibration2.html b/dev/reference/plotSparseCalibration2.html index fe2206410..6835e9db8 100644 --- a/dev/reference/plotSparseCalibration2.html +++ b/dev/reference/plotSparseCalibration2.html @@ -1,5 +1,5 @@ -Plot the conventional calibration — plotSparseCalibration2 • PatientLevelPredictionPlot the conventional calibration — plotSparseCalibration2 • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -179,7 +179,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/plotSparseRoc.html b/dev/reference/plotSparseRoc.html index 7c77ea12b..804527b08 100644 --- a/dev/reference/plotSparseRoc.html +++ b/dev/reference/plotSparseRoc.html @@ -1,5 +1,5 @@ -Plot the ROC curve using the sparse thresholdSummary data frame — plotSparseRoc • PatientLevelPredictionPlot the ROC curve using the sparse thresholdSummary data frame — plotSparseRoc • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -178,7 +178,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/plotVariableScatterplot.html b/dev/reference/plotVariableScatterplot.html index 35b69ec01..bad98f313 100644 --- a/dev/reference/plotVariableScatterplot.html +++ b/dev/reference/plotVariableScatterplot.html @@ -1,5 +1,5 @@ -Plot the variable importance scatterplot — plotVariableScatterplot • PatientLevelPredictionPlot the variable importance scatterplot — plotVariableScatterplot • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -175,7 +175,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/plpDataSimulationProfile.html b/dev/reference/plpDataSimulationProfile.html index 1e9e58b37..f1640edfa 100644 --- a/dev/reference/plpDataSimulationProfile.html +++ b/dev/reference/plpDataSimulationProfile.html @@ -1,5 +1,5 @@ -A simulation profile — plpDataSimulationProfile • PatientLevelPredictionA simulation profile — plpDataSimulationProfile • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -164,7 +164,7 @@

Format

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/positiveLikelihoodRatio.html b/dev/reference/positiveLikelihoodRatio.html index 1b930f5b8..07b532040 100644 --- a/dev/reference/positiveLikelihoodRatio.html +++ b/dev/reference/positiveLikelihoodRatio.html @@ -1,5 +1,5 @@ -Calculate the positiveLikelihoodRatio — positiveLikelihoodRatio • PatientLevelPredictionCalculate the positiveLikelihoodRatio — positiveLikelihoodRatio • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -170,7 +170,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/positivePredictiveValue.html b/dev/reference/positivePredictiveValue.html index ce463d2e0..17518f4fa 100644 --- a/dev/reference/positivePredictiveValue.html +++ b/dev/reference/positivePredictiveValue.html @@ -1,5 +1,5 @@ -Calculate the positivePredictiveValue — positivePredictiveValue • PatientLevelPredictionCalculate the positivePredictiveValue — positivePredictiveValue • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -170,7 +170,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/predictCyclops.html b/dev/reference/predictCyclops.html index 42f71b404..f2185d18a 100644 --- a/dev/reference/predictCyclops.html +++ b/dev/reference/predictCyclops.html @@ -1,5 +1,5 @@ -Create predictive probabilities — predictCyclops • PatientLevelPredictionCreate predictive probabilities — predictCyclops • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -168,7 +168,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/predictPlp.html b/dev/reference/predictPlp.html index 8b1e51a51..084926411 100644 --- a/dev/reference/predictPlp.html +++ b/dev/reference/predictPlp.html @@ -1,5 +1,5 @@ -predictPlp — predictPlp • PatientLevelPredictionpredictPlp — predictPlp • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -171,7 +171,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/preprocessData.html b/dev/reference/preprocessData.html index 4247b425d..6856fc6c6 100644 --- a/dev/reference/preprocessData.html +++ b/dev/reference/preprocessData.html @@ -1,7 +1,5 @@ -A function that wraps around FeatureExtraction::tidyCovariateData to normalise the data -and remove rare or redundant features — preprocessData • PatientLevelPredictionA function that wraps around FeatureExtraction::tidyCovariateData to normalise the data and remove rare or redundant features — preprocessData • PatientLevelPredictionrecalibratePlp — recalibratePlp • PatientLevelPredictionrecalibratePlp — recalibratePlp • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -176,7 +176,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/recalibratePlpRefit.html b/dev/reference/recalibratePlpRefit.html index 45d87de2c..14d112db5 100644 --- a/dev/reference/recalibratePlpRefit.html +++ b/dev/reference/recalibratePlpRefit.html @@ -1,5 +1,5 @@ -recalibratePlpRefit — recalibratePlpRefit • PatientLevelPredictionrecalibratePlpRefit — recalibratePlpRefit • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -168,7 +168,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/runMultiplePlp.html b/dev/reference/runMultiplePlp.html index 80344173a..f2c488749 100644 --- a/dev/reference/runMultiplePlp.html +++ b/dev/reference/runMultiplePlp.html @@ -1,5 +1,5 @@ -Run a list of predictions analyses — runMultiplePlp • PatientLevelPredictionRun a list of predictions analyses — runMultiplePlp • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -193,7 +193,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/runPlp.html b/dev/reference/runPlp.html index 5aef4c2a9..f78eb412e 100644 --- a/dev/reference/runPlp.html +++ b/dev/reference/runPlp.html @@ -1,5 +1,5 @@ -runPlp - Develop and internally evaluate a model using specified settings — runPlp • PatientLevelPredictionrunPlp - Develop and internally evaluate a model using specified settings — runPlp • PatientLevelPrediction PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -264,7 +264,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/savePlpAnalysesJson.html b/dev/reference/savePlpAnalysesJson.html index dc734751f..3aec45482 100644 --- a/dev/reference/savePlpAnalysesJson.html +++ b/dev/reference/savePlpAnalysesJson.html @@ -1,5 +1,5 @@ -Save the modelDesignList to a json file — savePlpAnalysesJson • PatientLevelPredictionSave the modelDesignList to a json file — savePlpAnalysesJson • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -180,7 +180,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/savePlpData.html b/dev/reference/savePlpData.html index 1d38137e6..7a44b11ea 100644 --- a/dev/reference/savePlpData.html +++ b/dev/reference/savePlpData.html @@ -1,5 +1,5 @@ -Save the cohort data to folder — savePlpData • PatientLevelPredictionSave the cohort data to folder — savePlpData • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -173,7 +173,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/savePlpModel.html b/dev/reference/savePlpModel.html index 84bafa8b1..461785751 100644 --- a/dev/reference/savePlpModel.html +++ b/dev/reference/savePlpModel.html @@ -1,5 +1,5 @@ -Saves the plp model — savePlpModel • PatientLevelPredictionSaves the plp model — savePlpModel • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -156,7 +156,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/savePlpResult.html b/dev/reference/savePlpResult.html index 0927b6bc7..b3e4351e9 100644 --- a/dev/reference/savePlpResult.html +++ b/dev/reference/savePlpResult.html @@ -1,5 +1,5 @@ -Saves the result from runPlp into the location directory — savePlpResult • PatientLevelPredictionSaves the result from runPlp into the location directory — savePlpResult • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -156,7 +156,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/savePlpShareable.html b/dev/reference/savePlpShareable.html index 4b3fa347c..ee912806d 100644 --- a/dev/reference/savePlpShareable.html +++ b/dev/reference/savePlpShareable.html @@ -1,5 +1,5 @@ -Save the plp result as json files and csv files for transparent sharing — savePlpShareable • PatientLevelPredictionSave the plp result as json files and csv files for transparent sharing — savePlpShareable • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -160,7 +160,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/savePrediction.html b/dev/reference/savePrediction.html index 32492125a..c5b660a92 100644 --- a/dev/reference/savePrediction.html +++ b/dev/reference/savePrediction.html @@ -1,5 +1,5 @@ -Saves the prediction dataframe to RDS — savePrediction • PatientLevelPredictionSaves the prediction dataframe to RDS — savePrediction • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -160,7 +160,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/sensitivity.html b/dev/reference/sensitivity.html index 2d5c23be4..348e83856 100644 --- a/dev/reference/sensitivity.html +++ b/dev/reference/sensitivity.html @@ -1,5 +1,5 @@ -Calculate the sensitivity — sensitivity • PatientLevelPredictionCalculate the sensitivity — sensitivity • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -170,7 +170,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/setAdaBoost.html b/dev/reference/setAdaBoost.html index 45e383169..743335c69 100644 --- a/dev/reference/setAdaBoost.html +++ b/dev/reference/setAdaBoost.html @@ -1,5 +1,5 @@ -Create setting for AdaBoost with python DecisionTreeClassifier base estimator — setAdaBoost • PatientLevelPredictionCreate setting for AdaBoost with python DecisionTreeClassifier base estimator — setAdaBoost • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -175,7 +175,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/setCoxModel.html b/dev/reference/setCoxModel.html index 7f807dfae..7506ff3e1 100644 --- a/dev/reference/setCoxModel.html +++ b/dev/reference/setCoxModel.html @@ -1,5 +1,5 @@ -Create setting for lasso Cox model — setCoxModel • PatientLevelPredictionCreate setting for lasso Cox model — setCoxModel • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -195,7 +195,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/setDecisionTree.html b/dev/reference/setDecisionTree.html index 03cbf16f9..f34880da8 100644 --- a/dev/reference/setDecisionTree.html +++ b/dev/reference/setDecisionTree.html @@ -1,5 +1,5 @@ -Create setting for the scikit-learn 1.0.1 DecisionTree with python — setDecisionTree • PatientLevelPredictionCreate setting for the scikit-learn 1.0.1 DecisionTree with python — setDecisionTree • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -207,7 +207,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/setGradientBoostingMachine.html b/dev/reference/setGradientBoostingMachine.html index c5598b04e..5b6829d51 100644 --- a/dev/reference/setGradientBoostingMachine.html +++ b/dev/reference/setGradientBoostingMachine.html @@ -1,5 +1,5 @@ -Create setting for gradient boosting machine model using gbm_xgboost implementation — setGradientBoostingMachine • PatientLevelPredictionCreate setting for gradient boosting machine model using gbm_xgboost implementation — setGradientBoostingMachine • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -202,7 +202,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/setIterativeHardThresholding.html b/dev/reference/setIterativeHardThresholding.html index 22d7d1ca3..7ecdbcf20 100644 --- a/dev/reference/setIterativeHardThresholding.html +++ b/dev/reference/setIterativeHardThresholding.html @@ -1,5 +1,5 @@ -Create setting for lasso logistic regression — setIterativeHardThresholding • PatientLevelPredictionCreate setting for lasso logistic regression — setIterativeHardThresholding • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -205,7 +205,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/setKNN.html b/dev/reference/setKNN.html index e8e22d831..634a7b801 100644 --- a/dev/reference/setKNN.html +++ b/dev/reference/setKNN.html @@ -1,5 +1,5 @@ -Create setting for knn model — setKNN • PatientLevelPredictionCreate setting for knn model — setKNN • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -163,7 +163,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/setLassoLogisticRegression.html b/dev/reference/setLassoLogisticRegression.html index a36fbe053..9af9f692e 100644 --- a/dev/reference/setLassoLogisticRegression.html +++ b/dev/reference/setLassoLogisticRegression.html @@ -1,5 +1,5 @@ -Create setting for lasso logistic regression — setLassoLogisticRegression • PatientLevelPredictionCreate setting for lasso logistic regression — setLassoLogisticRegression • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -205,7 +205,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/setLightGBM.html b/dev/reference/setLightGBM.html index e496f9818..82f65e1d7 100644 --- a/dev/reference/setLightGBM.html +++ b/dev/reference/setLightGBM.html @@ -1,5 +1,5 @@ -Create setting for gradient boosting machine model using lightGBM (https://github.com/microsoft/LightGBM/tree/master/R-package). — setLightGBM • PatientLevelPredictionCreate setting for gradient boosting machine model using lightGBM (https://github.com/microsoft/LightGBM/tree/master/R-package). — setLightGBM • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -214,7 +214,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/setMLP.html b/dev/reference/setMLP.html index d291a15c1..feb2b0f66 100644 --- a/dev/reference/setMLP.html +++ b/dev/reference/setMLP.html @@ -1,5 +1,5 @@ -Create setting for neural network model with python — setMLP • PatientLevelPredictionCreate setting for neural network model with python — setMLP • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -261,7 +261,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/setNaiveBayes.html b/dev/reference/setNaiveBayes.html index 245197077..e30432abe 100644 --- a/dev/reference/setNaiveBayes.html +++ b/dev/reference/setNaiveBayes.html @@ -1,5 +1,5 @@ -Create setting for naive bayes model with python — setNaiveBayes • PatientLevelPredictionCreate setting for naive bayes model with python — setNaiveBayes • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -149,7 +149,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/setPythonEnvironment.html b/dev/reference/setPythonEnvironment.html index 8b4b1c89b..7ad0eb7d6 100644 --- a/dev/reference/setPythonEnvironment.html +++ b/dev/reference/setPythonEnvironment.html @@ -1,5 +1,5 @@ -Use the virtual environment created using configurePython() — setPythonEnvironment • PatientLevelPredictionUse the virtual environment created using configurePython() — setPythonEnvironment • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -156,7 +156,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/setRandomForest.html b/dev/reference/setRandomForest.html index 7d2bc8ca2..00aae7877 100644 --- a/dev/reference/setRandomForest.html +++ b/dev/reference/setRandomForest.html @@ -1,5 +1,5 @@ -Create setting for random forest model with python (very fast) — setRandomForest • PatientLevelPredictionCreate setting for random forest model with python (very fast) — setRandomForest • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -233,7 +233,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/setSVM.html b/dev/reference/setSVM.html index d02cd4503..16e152dea 100644 --- a/dev/reference/setSVM.html +++ b/dev/reference/setSVM.html @@ -1,5 +1,5 @@ -Create setting for the python sklearn SVM (SVC function) — setSVM • PatientLevelPredictionCreate setting for the python sklearn SVM (SVC function) — setSVM • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -202,7 +202,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/simulatePlpData.html b/dev/reference/simulatePlpData.html index e6b9bc7e6..b37297916 100644 --- a/dev/reference/simulatePlpData.html +++ b/dev/reference/simulatePlpData.html @@ -1,5 +1,5 @@ -Generate simulated data — simulatePlpData • PatientLevelPredictionGenerate simulated data — simulatePlpData • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -165,7 +165,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/sklearnFromJson.html b/dev/reference/sklearnFromJson.html index 2d633726d..b90c8fd12 100644 --- a/dev/reference/sklearnFromJson.html +++ b/dev/reference/sklearnFromJson.html @@ -1,5 +1,5 @@ -Loads sklearn python model from json — sklearnFromJson • PatientLevelPredictionLoads sklearn python model from json — sklearnFromJson • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -148,7 +148,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/sklearnToJson.html b/dev/reference/sklearnToJson.html index 5b4ea7aa7..4cd3de6f2 100644 --- a/dev/reference/sklearnToJson.html +++ b/dev/reference/sklearnToJson.html @@ -1,5 +1,5 @@ -Saves sklearn python model object to json in path — sklearnToJson • PatientLevelPredictionSaves sklearn python model object to json in path — sklearnToJson • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -152,7 +152,7 @@

Arguments

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/specificity.html b/dev/reference/specificity.html index 410d48247..52b153aab 100644 --- a/dev/reference/specificity.html +++ b/dev/reference/specificity.html @@ -1,5 +1,5 @@ -Calculate the specificity — specificity • PatientLevelPredictionCalculate the specificity — specificity • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -170,7 +170,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/splitData.html b/dev/reference/splitData.html index e30720e4f..c2e19c222 100644 --- a/dev/reference/splitData.html +++ b/dev/reference/splitData.html @@ -1,5 +1,5 @@ -Split the plpData into test/train sets using a splitting settings of class splitSettings — splitData • PatientLevelPredictionSplit the plpData into test/train sets using a splitting settings of class splitSettings — splitData • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -177,7 +177,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/toSparseM.html b/dev/reference/toSparseM.html index ba65d51f5..57b3aa6aa 100644 --- a/dev/reference/toSparseM.html +++ b/dev/reference/toSparseM.html @@ -1,5 +1,5 @@ -Convert the plpData in COO format into a sparse R matrix — toSparseM • PatientLevelPredictionConvert the plpData in COO format into a sparse R matrix — toSparseM • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -186,7 +186,7 @@

Examples

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/validateMultiplePlp.html b/dev/reference/validateMultiplePlp.html index 4791e6742..c2d360b83 100644 --- a/dev/reference/validateMultiplePlp.html +++ b/dev/reference/validateMultiplePlp.html @@ -1,5 +1,5 @@ -externally validate the multiple plp models across new datasets — validateMultiplePlp • PatientLevelPredictionexternally validate the multiple plp models across new datasets — validateMultiplePlp • PatientLevelPredictionopen a local shiny app for viewing the result of a PLP analyses from a database — viewDatabaseResultPlp • PatientLevelPredictionopen a local shiny app for viewing the result of a PLP analyses from a database — viewDatabaseResultPlp • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -184,7 +184,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/viewMultiplePlp.html b/dev/reference/viewMultiplePlp.html index 276505e05..cf133d068 100644 --- a/dev/reference/viewMultiplePlp.html +++ b/dev/reference/viewMultiplePlp.html @@ -1,5 +1,5 @@ -open a local shiny app for viewing the result of a multiple PLP analyses — viewMultiplePlp • PatientLevelPredictionopen a local shiny app for viewing the result of a multiple PLP analyses — viewMultiplePlp • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -153,7 +153,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.

diff --git a/dev/reference/viewPlp.html b/dev/reference/viewPlp.html index 6baece764..5d40ad5a4 100644 --- a/dev/reference/viewPlp.html +++ b/dev/reference/viewPlp.html @@ -1,5 +1,5 @@ -viewPlp - Interactively view the performance and model settings — viewPlp • PatientLevelPredictionviewPlp - Interactively view the performance and model settings — viewPlp • PatientLevelPrediction @@ -17,7 +17,7 @@ PatientLevelPrediction - 6.3.6.9000 + 6.3.7.9999 @@ -166,7 +166,7 @@

Details

-

Site built with pkgdown 2.0.7.

+

Site built with pkgdown 2.0.8.