diff --git a/DESCRIPTION b/DESCRIPTION index e12ffac..5cb9960 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -2,7 +2,7 @@ Package: MethodEvaluation Type: Package Title: Package for Evaluation of Estimation Methods Version: 2.3.0 -Date: 2023-04-13 +Date: 2023-06-30 Authors@R: c( person("Martijn", "Schuemie", , "schuemie@ohdsi.org", role = c("aut", "cre")) ) diff --git a/docs/articles/OhdsiMethodsBenchmark.html b/docs/articles/OhdsiMethodsBenchmark.html index 92a5b8f..3484fc7 100644 --- a/docs/articles/OhdsiMethodsBenchmark.html +++ b/docs/articles/OhdsiMethodsBenchmark.html @@ -85,7 +85,7 @@

Running the OHDSI Methods Benchmark

Martijn J. Schuemie

-

2023-04-13

+

2023-06-30

Source: vignettes/OhdsiMethodsBenchmark.Rmd diff --git a/docs/pkgdown.yml b/docs/pkgdown.yml index 9cf782e..0010bb7 100644 --- a/docs/pkgdown.yml +++ b/docs/pkgdown.yml @@ -3,5 +3,5 @@ pkgdown: 2.0.7 pkgdown_sha: ~ articles: OhdsiMethodsBenchmark: OhdsiMethodsBenchmark.html -last_built: 2023-04-13T13:56Z +last_built: 2023-06-30T04:07Z diff --git a/docs/reference/computeMetrics.html b/docs/reference/computeMetrics.html index e8ffd01..418ff05 100644 --- a/docs/reference/computeMetrics.html +++ b/docs/reference/computeMetrics.html @@ -122,7 +122,7 @@

Examples

#> Setting levels: control = FALSE, case = TRUE #> Setting direction: controls < cases #> auc coverage meanP mse type1 type2 -#> 1.00 0.71 148.61 0.02 0.32 0.00 +#> 1.00 0.72 136.49 0.03 0.24 0.00 #> nonEstimable #> 0.00 diff --git a/docs/reference/packageCustomBenchmarkResults.html b/docs/reference/packageCustomBenchmarkResults.html index 4de2a43..e8b2f22 100644 --- a/docs/reference/packageCustomBenchmarkResults.html +++ b/docs/reference/packageCustomBenchmarkResults.html @@ -72,6 +72,7 @@

Package results of a method on the OHDSI Methods Benchmark

estimates, negativeControls, synthesisSummary, + mdrr = NULL, analysisRef, databaseName, exportFolder @@ -93,6 +94,12 @@

Arguments

synthesizePositiveControls function.

+
mdrr
+

The MDRR as computed using the computeMdrr function. Should contain the +following columns: "exposureId", "outcomeId", "mdrr". For comparative analyses, +the "mdrr" column can be replaced by a "mdrrTarget" and "mdrrComparator" column.

+ +
analysisRef

A file describing the various analyses that were performed. See details for required columns.

diff --git a/extras/MethodEvaluation.pdf b/extras/MethodEvaluation.pdf index 52dbd60..9aad438 100644 Binary files a/extras/MethodEvaluation.pdf and b/extras/MethodEvaluation.pdf differ diff --git a/inst/doc/OhdsiMethodsBenchmark.pdf b/inst/doc/OhdsiMethodsBenchmark.pdf index 46b70a9..a67b8f2 100644 Binary files a/inst/doc/OhdsiMethodsBenchmark.pdf and b/inst/doc/OhdsiMethodsBenchmark.pdf differ