From c78a51bd1fe7e902dddab60eef34d24de93a09c7 Mon Sep 17 00:00:00 2001 From: Schuemie Date: Wed, 11 Jan 2023 14:05:27 +0100 Subject: [PATCH] Adding ResultModelManager --- DESCRIPTION | 10 ++++++---- NEWS.md | 7 +++++++ R/Hades.R | 2 +- R/Packages.R | 2 +- Rmd/packageStatuses.Rmd | 1 + Rmd/packages.Rmd | 1 + Rmd/support.Rmd | 2 ++ docs/developmentRoadmap.html | 2 ++ docs/packageStatuses.html | 16 +++++++++++++--- docs/packages.html | 6 ++++++ docs/support.html | 1 + extras/packages.csv | 5 +++-- 12 files changed, 44 insertions(+), 11 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 49d190a..83c9403 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: Hades Type: Package Title: Health Analytics Data-to-Evidence Suite -Version: 1.7.0 -Date: 2022-12-12 +Version: 1.8.0 +Date: 2023-01-11 Authors@R: c( person("Martijn", "Schuemie", , "schuemie@ohdsi.org", role = c("aut", "cre")), person("Observational Health Data Science and Informatics", role = c("cph")) @@ -41,7 +41,8 @@ Imports: OhdsiSharing, Hydra, IterativeHardThresholding, - OhdsiShinyModules + OhdsiShinyModules, + ResultModelManager Remotes: ohdsi/BigKnn, ohdsi/ROhdsiWebApi, @@ -63,7 +64,8 @@ Remotes: ohdsi/CohortGenerator, ohdsi/DeepPatientLevelPrediction, ohdsi/CohortExplorer, - ohdsi/OhdsiShinyModules + ohdsi/OhdsiShinyModules, + ohdsi/ResultModelManager LazyData: false RoxygenNote: 7.2.0 Encoding: UTF-8 diff --git a/NEWS.md b/NEWS.md index 32243af..1ae2bbb 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,10 @@ +HADES 1.8.0 +=========== + +Changes + +- Adding ResultModelManager to HADES + HADES 1.7.0 =========== diff --git a/R/Hades.R b/R/Hades.R index 618b3e1..5eae1d3 100644 --- a/R/Hades.R +++ b/R/Hades.R @@ -1,4 +1,4 @@ -# Copyright 2022 Observational Health Data Sciences and Informatics +# Copyright 2023 Observational Health Data Sciences and Informatics # # This file is part of Hades # diff --git a/R/Packages.R b/R/Packages.R index 5a2e576..e56c81b 100644 --- a/R/Packages.R +++ b/R/Packages.R @@ -1,4 +1,4 @@ -# Copyright 2022 Observational Health Data Sciences and Informatics +# Copyright 2023 Observational Health Data Sciences and Informatics # # This file is part of Hades # diff --git a/Rmd/packageStatuses.Rmd b/Rmd/packageStatuses.Rmd index e5634c4..fce6d7e 100644 --- a/Rmd/packageStatuses.Rmd +++ b/Rmd/packageStatuses.Rmd @@ -43,6 +43,7 @@ The table below lists, for each of the HADES packages, the following details: | [PatientLevelPrediction](https://github.com/OHDSI/PatientLevelPrediction) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/PatientLevelPrediction?label=%20)](https://ohdsi.github.io/PatientLevelPrediction/) | Jenna Reps & Peter Rijnbeek | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/PatientLevelPrediction?label=%20)](https://github.com/OHDSI/PatientLevelPrediction/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/PatientLevelPrediction?label=%20)](https://github.com/OHDSI/PatientLevelPrediction/pulls) | [![Build Status](https://github.com/OHDSI/PatientLevelPrediction/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/PatientLevelPrediction/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/PatientLevelPrediction/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/PatientLevelPrediction?branch=main) | | [PhenotypeLibrary](https://github.com/OHDSI/PhenotypeLibrary) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/PhenotypeLibrary?label=%20)](https://ohdsi.github.io/PhenotypeLibrary/) | Gowtham Rao | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/PhenotypeLibrary?label=%20)](https://github.com/OHDSI/PhenotypeLibrary/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/PhenotypeLibrary?label=%20)](https://github.com/OHDSI/PhenotypeLibrary/pulls) | [![Build Status](https://github.com/OHDSI/PhenotypeLibrary/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/PhenotypeLibrary/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/PhenotypeLibrary/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/PhenotypeLibrary?branch=main) | | [PheValuator](https://github.com/OHDSI/PheValuator) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/PheValuator?label=%20)](https://ohdsi.github.io/PheValuator/) | Joel Swerdel | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/PheValuator?label=%20)](https://github.com/OHDSI/PheValuator/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/PheValuator?label=%20)](https://github.com/OHDSI/PheValuator/pulls) | [![Build Status](https://github.com/OHDSI/PheValuator/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/PheValuator/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/PheValuator/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/PheValuator?branch=main) | +| [ResultModelManager](https://github.com/OHDSI/ResultModelManager) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/ResultModelManager?label=%20)](https://ohdsi.github.io/ResultModelManager/) | Jamie Gilbert | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/ResultModelManager?label=%20)](https://github.com/OHDSI/ResultModelManager/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/ResultModelManager?label=%20)](https://github.com/OHDSI/ResultModelManager/pulls) | [![Build Status](https://github.com/OHDSI/ResultModelManager/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/ResultModelManager/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/ResultModelManager/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/ResultModelManager?branch=main) | | [ROhdsiWebApi](https://github.com/OHDSI/ROhdsiWebApi) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/ROhdsiWebApi?label=%20)](https://ohdsi.github.io/ROhdsiWebApi/) | Gowtham Rao | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/ROhdsiWebApi?label=%20)](https://github.com/OHDSI/ROhdsiWebApi/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/ROhdsiWebApi?label=%20)](https://github.com/OHDSI/ROhdsiWebApi/pulls) | [![Build Status](https://github.com/OHDSI/ROhdsiWebApi/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/ROhdsiWebApi/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/ROhdsiWebApi/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/ROhdsiWebApi?branch=main) | | [SelfControlledCaseSeries](https://github.com/OHDSI/SelfControlledCaseSeries) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/SelfControlledCaseSeries?label=%20)](https://ohdsi.github.io/SelfControlledCaseSeries/) | Martijn Schuemie | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/SelfControlledCaseSeries?label=%20)](https://github.com/OHDSI/SelfControlledCaseSeries/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/SelfControlledCaseSeries?label=%20)](https://github.com/OHDSI/SelfControlledCaseSeries/pulls) | [![Build Status](https://github.com/OHDSI/SelfControlledCaseSeries/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/SelfControlledCaseSeries/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/SelfControlledCaseSeries/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/SelfControlledCaseSeries?branch=main) | | [SelfControlledCohort](https://github.com/OHDSI/SelfControlledCohort) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/SelfControlledCohort?label=%20)](https://ohdsi.github.io/SelfControlledCohort/) | Jamie Gilbert | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/SelfControlledCohort?label=%20)](https://github.com/OHDSI/SelfControlledCohort/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/SelfControlledCohort?label=%20)](https://github.com/OHDSI/SelfControlledCohort/pulls) | [![Build Status](https://github.com/OHDSI/SelfControlledCohort/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/SelfControlledCohort/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/SelfControlledCohort/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/SelfControlledCohort?branch=main) | diff --git a/Rmd/packages.Rmd b/Rmd/packages.Rmd index 4a61def..2ed18f8 100644 --- a/Rmd/packages.Rmd +++ b/Rmd/packages.Rmd @@ -50,6 +50,7 @@ Below are the packages included in HADES. For each package a link is provided wi

  • OhdsiSharing

    Securely sharing (large) files between OHDSI collaborators.
    Learn more...

  • OhdsiShinyModules

    Contains shiny modules that can be used within shiny result interfaces
    Learn more...

  • ParallelLogger

    Support for parallel computation with logging to console, disk, or e-mail.
    Learn more...
    • +

  • ResultModelManager

    A lightweight utility for data migrations allowing old results to work with new shiny apps and data visualisations.
    Learn more...

  • ROhdsiWebApi

    Interact with OHDSI WebAPI web services.
    Learn more...

  • SqlRender

    Generate SQL on the fly for the various SQL dialects.
    Learn more...
    • diff --git a/Rmd/support.Rmd b/Rmd/support.Rmd index e17c6c9..32c36e4 100644 --- a/Rmd/support.Rmd +++ b/Rmd/support.Rmd @@ -64,6 +64,8 @@ Bug reports should be files using the issue tracker of the misbehaving package: - [PheValuator issue tracker](https://github.com/OHDSI/PheValuator/issues) +- [ResultModelManager issue tracker](https://github.com/OHDSI/ResultModelManager/issues) + - [ROhdsiWebApi issue tracker](https://github.com/OHDSI/ROhdsiWebApi/issues) - [SelfControlledCaseSeries issue tracker](https://github.com/OHDSI/SelfControlledCaseSeries/issues) diff --git a/docs/developmentRoadmap.html b/docs/developmentRoadmap.html index 4807b44..faae289 100644 --- a/docs/developmentRoadmap.html +++ b/docs/developmentRoadmap.html @@ -495,6 +495,8 @@

    Package milestones

    +

    +

    diff --git a/docs/packageStatuses.html b/docs/packageStatuses.html index 0d989e2..9d1709f 100644 --- a/docs/packageStatuses.html +++ b/docs/packageStatuses.html @@ -650,6 +650,16 @@

    Package statuses

    codecov.io +ResultModelManager +Version +Jamie Gilbert +GitHub +Open issues +Open pull-requests +Build Status +codecov.io + + ROhdsiWebApi Version Gowtham Rao @@ -659,7 +669,7 @@

    Package statuses

    Build Status codecov.io - + SelfControlledCaseSeries Version Martijn Schuemie @@ -669,7 +679,7 @@

    Package statuses

    Build Status codecov.io - + SelfControlledCohort Version Jamie Gilbert @@ -679,7 +689,7 @@

    Package statuses

    Build Status codecov.io - + SqlRender Version Martijn Schuemie diff --git a/docs/packages.html b/docs/packages.html index 1dff629..58fc427 100644 --- a/docs/packages.html +++ b/docs/packages.html @@ -631,6 +631,12 @@

  • + ResultModelManager +

    +A lightweight utility for data migrations allowing old results to work with new shiny apps and data visualisations.
    Learn more… +
    • +
  • +

    ROhdsiWebApi

    Interact with OHDSI WebAPI web services.
    Learn more… diff --git a/docs/support.html b/docs/support.html index 210ce95..33d4380 100644 --- a/docs/support.html +++ b/docs/support.html @@ -474,6 +474,7 @@

    Bug reports

  • PatientLevelPrediction issue tracker

  • PhenotypeLibrary issue tracker

  • PheValuator issue tracker

    • +

  • ResultModelManager issue tracker

  • ROhdsiWebApi issue tracker

  • SelfControlledCaseSeries issue tracker

  • SelfControlledCohort issue tracker

    • diff --git a/extras/packages.csv b/extras/packages.csv index 65bd6e3..4044926 100644 --- a/extras/packages.csv +++ b/extras/packages.csv @@ -26,5 +26,6 @@ order,name,section,description,inCran,pages,maintainers,CRON 24,OhdsiSharing,Supporting packages,Securely sharing (large) files between OHDSI collaborators.,FALSE,TRUE,Lee Evans,0 8 * * 0 25,OhdsiShinyModules,Supporting packages,Contains shiny modules that can be used within shiny result interfaces,FALSE,TRUE,Jenna Reps,0 9 * * 0 25,ParallelLogger,Supporting packages,"Support for parallel computation with logging to console, disk, or e-mail.",TRUE,TRUE,Martijn Schuemie ,0 10 * * 0 -26,ROhdsiWebApi,Supporting packages,Interact with OHDSI WebAPI web services.,FALSE,TRUE,Gowtham Rao,0 11 * * 0 -27,SqlRender,Supporting packages,Generate SQL on the fly for the various SQL dialects.,TRUE,TRUE,Martijn Schuemie ,0 12 * * 0 +26,ResultModelManager,Supporting packages,"A lightweight utility for data migrations allowing old results to work with new shiny apps and data visualisations.",FALSE,TRUE,Jamie Gilbert,0 13 * * 0 +27,ROhdsiWebApi,Supporting packages,Interact with OHDSI WebAPI web services.,FALSE,TRUE,Gowtham Rao,0 11 * * 0 +28,SqlRender,Supporting packages,Generate SQL on the fly for the various SQL dialects.,TRUE,TRUE,Martijn Schuemie ,0 12 * * 0