diff --git a/.github/workflows/R_CMD_check_Hades.yaml b/.github/workflows/R_CMD_check_Hades.yaml index 9b5ac15..a54f43a 100644 --- a/.github/workflows/R_CMD_check_Hades.yaml +++ b/.github/workflows/R_CMD_check_Hades.yaml @@ -113,7 +113,7 @@ jobs: path: check - name: Upload source package - if: success() && runner.os == 'macOS' && github.event_name != 'pull_request' && github.ref == 'refs/heads/master' + if: success() && runner.os == 'macOS' && github.event_name != 'pull_request' && github.ref == 'refs/heads/main' uses: actions/upload-artifact@v2 with: name: package_tarball @@ -127,7 +127,7 @@ jobs: env: GH_TOKEN: ${{ secrets.GH_TOKEN }} - if: ${{ github.event_name != 'pull_request' && github.ref == 'refs/heads/master' }} + if: ${{ github.event_name != 'pull_request' && github.ref == 'refs/heads/main' }} steps: diff --git a/Rmd/community.Rmd b/Rmd/community.Rmd index e9c9b24..8148f91 100644 --- a/Rmd/community.Rmd +++ b/Rmd/community.Rmd @@ -19,7 +19,7 @@ The HADES workgroup has regular meetings. Meetings are open to all, and will be ```{block2, type='rounded'} ### Next HADES meeting -Date: **December 16, 2021** +Date: **February 18, 2022** Time (DST where appropriate): @@ -35,6 +35,10 @@ URL: [Join Microsoft Teams Meeting](https://teams.microsoft.com/l/meetup-join/19 ## Prior meetings +### 2022 + +- January 20: *2022 objectives and key results*. See recordings in Teams + ### 2021 - November 18: *Study packages, Hydra, renv, and Docker*. [Notes](meetings/Hades18Nov2021.docx) and [slides](meetings/HadesNovember2021.pptx) diff --git a/Rmd/contribute.Rmd b/Rmd/contribute.Rmd index 031ee2d..6e97fd4 100644 --- a/Rmd/contribute.Rmd +++ b/Rmd/contribute.Rmd @@ -18,5 +18,5 @@ If you're a bit more experienced with HADES and are looking to improve your open # Write unit tests -An important part of validating the methods in the library is unit testing. A unit test is a small program that tests a specific function in the library. For example, there are [several unit tests](https://github.com/OHDSI/CohortMethod/blob/master/tests/testthat/test-psFunctions.R#L5) that make sure the propensity score matching works correctly. We can never have enough unit tests, and writing unit tests is an excellent way to learn how HADES packages work under the hood. Make sure you read through the Develops section first! +An important part of validating the methods in the library is unit testing. A unit test is a small program that tests a specific function in the library. For example, there are [several unit tests](https://github.com/OHDSI/CohortMethod/blob/main/tests/testthat/test-psFunctions.R#L5) that make sure the propensity score matching works correctly. We can never have enough unit tests, and writing unit tests is an excellent way to learn how HADES packages work under the hood. Make sure you read through the Develops section first! diff --git a/Rmd/developerGuidelines.Rmd b/Rmd/developerGuidelines.Rmd index 1c6919d..e92f8af 100644 --- a/Rmd/developerGuidelines.Rmd +++ b/Rmd/developerGuidelines.Rmd @@ -47,7 +47,7 @@ All of these should be generated when releasing a new version, as discussed in t ### README.md -In addition, the README.md file forms the main page of the package repo. This page has a standard structure, as for example can be seen [here](https://github.com/OHDSI/FeatureExtraction/blob/master/README.md). +In addition, the README.md file forms the main page of the package repo. This page has a standard structure, as for example can be seen [here](https://github.com/OHDSI/FeatureExtraction/blob/main/README.md). ## extras folder @@ -93,7 +93,7 @@ We use `codecov` in combination with the `covr` package to measure which lines o On the OHDSI Jenkins server there are 3 databases that can be accessed from within a unit test, for the 3 main platforms (SQL Server, Oracle, PostgreSQL). To access the databases locally, you'll need to specify several environmental variables. These environmental variables should also be available when running tests using Github Actions. -Some example code in the DatabaseConnector package can be found [here](https://github.com/OHDSI/DatabaseConnector/blob/master/tests/testthat/test-connection.R). +Some example code in the DatabaseConnector package can be found [here](https://github.com/OHDSI/DatabaseConnector/blob/main/tests/testthat/test-connection.R). # Coding guidelines diff --git a/Rmd/packageStatuses.Rmd b/Rmd/packageStatuses.Rmd index fc85a2d..f349ad1 100644 --- a/Rmd/packageStatuses.Rmd +++ b/Rmd/packageStatuses.Rmd @@ -12,30 +12,31 @@ The table below lists, for each of the HADES packages, the following details: - **Availability**: whether the package can be installed from CRAN (using `install.packages()`), or needs to be installed from GitHub (using `remotes::install_github()`). - **Open issues**: The number of open issues. - **Open pull-requests**: The number of open pull-requests. -- **Build status**: Whether the package passes R Check (including unit tests) on several different operating systems, and using various database platforms. The status shown is of the the latest push, including those to develop branches. Released packages (in the master branch) by definition have successful builds, and are not shown here. -- **Coverage**: The percentage of lines of code that is covered by the unit tests in the master branch (i.e. in the latest released version). +- **Build status**: Whether the package passes R Check (including unit tests) on several different operating systems, and using various database platforms. The status shown is of the the latest push, including those to develop branches. Released packages (in the `main` branch) by definition have successful builds, and are not shown here. +- **Coverage**: The percentage of lines of code that is covered by the unit tests in the `main` branch (i.e. in the latest released version). | Package | Version | Maintainer(s) | Availability | Open issues | Open pull-requests | Build status | Coverage | | :----------------- | :----: |:--------------- | :------: | :------: | :------: | :------------: | :----------: | -| [Andromeda](https://github.com/OHDSI/Andromeda) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Andromeda?label=%20)](https://ohdsi.github.io/Andromeda/) | Adam Black | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Andromeda?label=%20)](https://github.com/OHDSI/Andromeda/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Andromeda?label=%20)](https://github.com/OHDSI/Andromeda/pulls) | [![Build Status](https://github.com/OHDSI/Andromeda/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Andromeda/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Andromeda/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/Andromeda?branch=master) | -| [BigKnn](https://github.com/OHDSI/BigKnn) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/BigKnn?label=%20)](https://ohdsi.github.io/BigKnn/) | Martijn Schuemie | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/BigKnn?label=%20)](https://github.com/OHDSI/BigKnn/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/BigKnn?label=%20)](https://github.com/OHDSI/BigKnn/pulls) | [![Build Status](https://github.com/OHDSI/BigKnn/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/BigKnn/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/BigKnn/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/BigKnn?branch=master) | -| [CirceR](https://github.com/OHDSI/CirceR) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/CirceR?label=%20)](https://ohdsi.github.io/CirceR/) | Chris Knoll | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/CirceR?label=%20)](https://github.com/OHDSI/CirceR/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/CirceR?label=%20)](https://github.com/OHDSI/CirceR/pulls) | [![Build Status](https://github.com/OHDSI/CirceR/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/CirceR/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/CirceR/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/CirceR?branch=master) | -| [CohortDiagnostics](https://github.com/OHDSI/CohortDiagnostics) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/CohortDiagnostics?label=%20)](https://ohdsi.github.io/CohortDiagnostics/) | Gowtham Rao | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/CohortDiagnostics?label=%20)](https://github.com/OHDSI/CohortDiagnostics/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/CohortDiagnostics?label=%20)](https://github.com/OHDSI/CohortDiagnostics/pulls) | [![Build Status](https://github.com/OHDSI/CohortDiagnostics/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/CohortDiagnostics/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/CohortDiagnostics/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/CohortDiagnostics?branch=master) | -| [CohortGenerator](https://github.com/OHDSI/CohortGenerator) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/CohortGenerator?label=%20)](https://ohdsi.github.io/CohortGenerator/) | Anthony Sena | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/CohortGenerator?label=%20)](https://github.com/OHDSI/CohortGenerator/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/CohortGenerator?label=%20)](https://github.com/OHDSI/CohortGenerator/pulls) | [![Build Status](https://github.com/OHDSI/CohortGenerator/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/CohortGenerator/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/CohortGenerator/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/CohortGenerator?branch=master) | -| [CohortMethod](https://github.com/OHDSI/CohortMethod) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/CohortMethod?label=%20)](https://ohdsi.github.io/CohortMethod/) | Martijn Schuemie | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/CohortMethod?label=%20)](https://github.com/OHDSI/CohortMethod/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/CohortMethod?label=%20)](https://github.com/OHDSI/CohortMethod/pulls) | [![Build Status](https://github.com/OHDSI/CohortMethod/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/CohortMethod/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/CohortMethod/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/CohortMethod?branch=master) | -| [Cyclops](https://github.com/OHDSI/Cyclops) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Cyclops?label=%20)](https://ohdsi.github.io/Cyclops/) | Marc Suchard | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Cyclops?label=%20)](https://github.com/OHDSI/Cyclops/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Cyclops?label=%20)](https://github.com/OHDSI/Cyclops/pulls) | [![Build Status](https://github.com/OHDSI/Cyclops/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Cyclops/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Cyclops/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/Cyclops?branch=master) | -| [DatabaseConnector](https://github.com/OHDSI/DatabaseConnector) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/DatabaseConnector?label=%20)](https://ohdsi.github.io/DatabaseConnector/) | Martijn Schuemie | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/DatabaseConnector?label=%20)](https://github.com/OHDSI/DatabaseConnector/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/DatabaseConnector?label=%20)](https://github.com/OHDSI/DatabaseConnector/pulls) | [![Build Status](https://github.com/OHDSI/DatabaseConnector/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/DatabaseConnector/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/DatabaseConnector/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/DatabaseConnector?branch=master) | -| [EmpiricalCalibration](https://github.com/OHDSI/EmpiricalCalibration) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/EmpiricalCalibration?label=%20)](https://ohdsi.github.io/EmpiricalCalibration/) | Martijn Schuemie | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/EmpiricalCalibration?label=%20)](https://github.com/OHDSI/EmpiricalCalibration/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/EmpiricalCalibration?label=%20)](https://github.com/OHDSI/EmpiricalCalibration/pulls) | [![Build Status](https://github.com/OHDSI/EmpiricalCalibration/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/EmpiricalCalibration/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/EmpiricalCalibration/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/EmpiricalCalibration?branch=master) | -| [Eunomia](https://github.com/OHDSI/Eunomia) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Eunomia?label=%20)](https://ohdsi.github.io/Eunomia/) | Frank DeFalco | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Eunomia?label=%20)](https://github.com/OHDSI/Eunomia/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Eunomia?label=%20)](https://github.com/OHDSI/Eunomia/pulls) | [![Build Status](https://github.com/OHDSI/Eunomia/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Eunomia/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Eunomia/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/Eunomia?branch=master) | -| [EvidenceSynthesis](https://github.com/OHDSI/EvidenceSynthesis) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/EvidenceSynthesis?label=%20)](https://ohdsi.github.io/EvidenceSynthesis/) | Martijn Schuemie | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/EvidenceSynthesis?label=%20)](https://github.com/OHDSI/EvidenceSynthesis/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/EvidenceSynthesis?label=%20)](https://github.com/OHDSI/EvidenceSynthesis/pulls) | [![Build Status](https://github.com/OHDSI/EvidenceSynthesis/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/EvidenceSynthesis/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/EvidenceSynthesis/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/EvidenceSynthesis?branch=master) | -| [FeatureExtraction](https://github.com/OHDSI/FeatureExtraction) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/FeatureExtraction?label=%20)](https://ohdsi.github.io/FeatureExtraction/) | Anthony Sena | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/FeatureExtraction?label=%20)](https://github.com/OHDSI/FeatureExtraction/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/FeatureExtraction?label=%20)](https://github.com/OHDSI/FeatureExtraction/pulls) | [![Build Status](https://github.com/OHDSI/FeatureExtraction/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/FeatureExtraction/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/FeatureExtraction/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/FeatureExtraction?branch=master) | -| [Hydra](https://github.com/OHDSI/Hydra) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Hydra?label=%20)](https://ohdsi.github.io/Hydra/) | Martijn Schuemie | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Hydra?label=%20)](https://github.com/OHDSI/Hydra/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Hydra?label=%20)](https://github.com/OHDSI/Hydra/pulls) | [![Build Status](https://github.com/OHDSI/Hydra/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Hydra/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Hydra/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/Hydra?branch=master) | -| [MethodEvaluation](https://github.com/OHDSI/MethodEvaluation) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/MethodEvaluation?label=%20)](https://ohdsi.github.io/MethodEvaluation/) | Martijn Schuemie | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/MethodEvaluation?label=%20)](https://github.com/OHDSI/MethodEvaluation/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/MethodEvaluation?label=%20)](https://github.com/OHDSI/MethodEvaluation/pulls) | [![Build Status](https://github.com/OHDSI/MethodEvaluation/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/MethodEvaluation/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/MethodEvaluation/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/MethodEvaluation?branch=master) | -| [OhdsiSharing](https://github.com/OHDSI/OhdsiSharing) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/OhdsiSharing?label=%20)](https://ohdsi.github.io/OhdsiSharing/) | Lee Evans | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/OhdsiSharing?label=%20)](https://github.com/OHDSI/OhdsiSharing/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/OhdsiSharing?label=%20)](https://github.com/OHDSI/OhdsiSharing/pulls) | [![Build Status](https://github.com/OHDSI/OhdsiSharing/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/OhdsiSharing/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/OhdsiSharing/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/OhdsiSharing?branch=master) | -| [ParallelLogger](https://github.com/OHDSI/ParallelLogger) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/ParallelLogger?label=%20)](https://ohdsi.github.io/ParallelLogger/) | Martijn Schuemie | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/ParallelLogger?label=%20)](https://github.com/OHDSI/ParallelLogger/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/ParallelLogger?label=%20)](https://github.com/OHDSI/ParallelLogger/pulls) | [![Build Status](https://github.com/OHDSI/ParallelLogger/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/ParallelLogger/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/ParallelLogger/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/ParallelLogger?branch=master) | -| [PatientLevelPrediction](https://github.com/OHDSI/PatientLevelPrediction) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/PatientLevelPrediction?label=%20)](https://ohdsi.github.io/PatientLevelPrediction/) | Jenna Reps & Peter Rijnbeek | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/PatientLevelPrediction?label=%20)](https://github.com/OHDSI/PatientLevelPrediction/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/PatientLevelPrediction?label=%20)](https://github.com/OHDSI/PatientLevelPrediction/pulls) | [![Build Status](https://github.com/OHDSI/PatientLevelPrediction/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/PatientLevelPrediction/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/PatientLevelPrediction/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/PatientLevelPrediction?branch=master) | -| [ROhdsiWebApi](https://github.com/OHDSI/ROhdsiWebApi) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/ROhdsiWebApi?label=%20)](https://ohdsi.github.io/ROhdsiWebApi/) | Gowtham Rao | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/ROhdsiWebApi?label=%20)](https://github.com/OHDSI/ROhdsiWebApi/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/ROhdsiWebApi?label=%20)](https://github.com/OHDSI/ROhdsiWebApi/pulls) | [![Build Status](https://github.com/OHDSI/ROhdsiWebApi/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/ROhdsiWebApi/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/ROhdsiWebApi/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/ROhdsiWebApi?branch=master) | -| [SelfControlledCaseSeries](https://github.com/OHDSI/SelfControlledCaseSeries) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/SelfControlledCaseSeries?label=%20)](https://ohdsi.github.io/SelfControlledCaseSeries/) | Martijn Schuemie | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/SelfControlledCaseSeries?label=%20)](https://github.com/OHDSI/SelfControlledCaseSeries/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/SelfControlledCaseSeries?label=%20)](https://github.com/OHDSI/SelfControlledCaseSeries/pulls) | [![Build Status](https://github.com/OHDSI/SelfControlledCaseSeries/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/SelfControlledCaseSeries/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/SelfControlledCaseSeries/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/SelfControlledCaseSeries?branch=master) | -| [SelfControlledCohort](https://github.com/OHDSI/SelfControlledCohort) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/SelfControlledCohort?label=%20)](https://ohdsi.github.io/SelfControlledCohort/) | Jamie Gilbert | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/SelfControlledCohort?label=%20)](https://github.com/OHDSI/SelfControlledCohort/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/SelfControlledCohort?label=%20)](https://github.com/OHDSI/SelfControlledCohort/pulls) | [![Build Status](https://github.com/OHDSI/SelfControlledCohort/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/SelfControlledCohort/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/SelfControlledCohort/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/SelfControlledCohort?branch=master) | -| [SqlRender](https://github.com/OHDSI/SqlRender) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/SqlRender?label=%20)](https://ohdsi.github.io/SqlRender/) | Martijn Schuemie | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/SqlRender?label=%20)](https://github.com/OHDSI/SqlRender/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/SqlRender?label=%20)](https://github.com/OHDSI/SqlRender/pulls) | [![Build Status](https://github.com/OHDSI/SqlRender/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/SqlRender/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/SqlRender/coverage.svg?branch=master)](https://codecov.io/github/OHDSI/SqlRender?branch=master) | +| [Andromeda](https://github.com/OHDSI/Andromeda) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Andromeda?label=%20)](https://ohdsi.github.io/Andromeda/) | Adam Black | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Andromeda?label=%20)](https://github.com/OHDSI/Andromeda/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Andromeda?label=%20)](https://github.com/OHDSI/Andromeda/pulls) | [![Build Status](https://github.com/OHDSI/Andromeda/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Andromeda/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Andromeda/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/Andromeda?branch=main) | +| [BigKnn](https://github.com/OHDSI/BigKnn) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/BigKnn?label=%20)](https://ohdsi.github.io/BigKnn/) | Martijn Schuemie | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/BigKnn?label=%20)](https://github.com/OHDSI/BigKnn/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/BigKnn?label=%20)](https://github.com/OHDSI/BigKnn/pulls) | [![Build Status](https://github.com/OHDSI/BigKnn/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/BigKnn/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/BigKnn/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/BigKnn?branch=main) | +| [Capr](https://github.com/OHDSI/Capr) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Capr?label=%20)](https://ohdsi.github.io/Capr/) | Martin Lavallee | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Capr?label=%20)](https://github.com/OHDSI/Capr/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Capr?label=%20)](https://github.com/OHDSI/Capr/pulls) | [![Build Status](https://github.com/OHDSI/Capr/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Capr/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Capr/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/Capr?branch=main) | +| [CirceR](https://github.com/OHDSI/CirceR) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/CirceR?label=%20)](https://ohdsi.github.io/CirceR/) | Chris Knoll | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/CirceR?label=%20)](https://github.com/OHDSI/CirceR/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/CirceR?label=%20)](https://github.com/OHDSI/CirceR/pulls) | [![Build Status](https://github.com/OHDSI/CirceR/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/CirceR/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/CirceR/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/CirceR?branch=main) | +| [CohortDiagnostics](https://github.com/OHDSI/CohortDiagnostics) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/CohortDiagnostics?label=%20)](https://ohdsi.github.io/CohortDiagnostics/) | Gowtham Rao | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/CohortDiagnostics?label=%20)](https://github.com/OHDSI/CohortDiagnostics/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/CohortDiagnostics?label=%20)](https://github.com/OHDSI/CohortDiagnostics/pulls) | [![Build Status](https://github.com/OHDSI/CohortDiagnostics/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/CohortDiagnostics/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/CohortDiagnostics/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/CohortDiagnostics?branch=main) | +| [CohortGenerator](https://github.com/OHDSI/CohortGenerator) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/CohortGenerator?label=%20)](https://ohdsi.github.io/CohortGenerator/) | Anthony Sena | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/CohortGenerator?label=%20)](https://github.com/OHDSI/CohortGenerator/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/CohortGenerator?label=%20)](https://github.com/OHDSI/CohortGenerator/pulls) | [![Build Status](https://github.com/OHDSI/CohortGenerator/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/CohortGenerator/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/CohortGenerator/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/CohortGenerator?branch=main) | +| [CohortMethod](https://github.com/OHDSI/CohortMethod) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/CohortMethod?label=%20)](https://ohdsi.github.io/CohortMethod/) | Martijn Schuemie | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/CohortMethod?label=%20)](https://github.com/OHDSI/CohortMethod/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/CohortMethod?label=%20)](https://github.com/OHDSI/CohortMethod/pulls) | [![Build Status](https://github.com/OHDSI/CohortMethod/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/CohortMethod/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/CohortMethod/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/CohortMethod?branch=main) | +| [Cyclops](https://github.com/OHDSI/Cyclops) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Cyclops?label=%20)](https://ohdsi.github.io/Cyclops/) | Marc Suchard | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Cyclops?label=%20)](https://github.com/OHDSI/Cyclops/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Cyclops?label=%20)](https://github.com/OHDSI/Cyclops/pulls) | [![Build Status](https://github.com/OHDSI/Cyclops/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Cyclops/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Cyclops/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/Cyclops?branch=main) | +| [DatabaseConnector](https://github.com/OHDSI/DatabaseConnector) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/DatabaseConnector?label=%20)](https://ohdsi.github.io/DatabaseConnector/) | Martijn Schuemie | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/DatabaseConnector?label=%20)](https://github.com/OHDSI/DatabaseConnector/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/DatabaseConnector?label=%20)](https://github.com/OHDSI/DatabaseConnector/pulls) | [![Build Status](https://github.com/OHDSI/DatabaseConnector/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/DatabaseConnector/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/DatabaseConnector/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/DatabaseConnector?branch=main) | +| [EmpiricalCalibration](https://github.com/OHDSI/EmpiricalCalibration) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/EmpiricalCalibration?label=%20)](https://ohdsi.github.io/EmpiricalCalibration/) | Martijn Schuemie | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/EmpiricalCalibration?label=%20)](https://github.com/OHDSI/EmpiricalCalibration/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/EmpiricalCalibration?label=%20)](https://github.com/OHDSI/EmpiricalCalibration/pulls) | [![Build Status](https://github.com/OHDSI/EmpiricalCalibration/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/EmpiricalCalibration/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/EmpiricalCalibration/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/EmpiricalCalibration?branch=main) | +| [Eunomia](https://github.com/OHDSI/Eunomia) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Eunomia?label=%20)](https://ohdsi.github.io/Eunomia/) | Frank DeFalco | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Eunomia?label=%20)](https://github.com/OHDSI/Eunomia/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Eunomia?label=%20)](https://github.com/OHDSI/Eunomia/pulls) | [![Build Status](https://github.com/OHDSI/Eunomia/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Eunomia/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Eunomia/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/Eunomia?branch=main) | +| [EvidenceSynthesis](https://github.com/OHDSI/EvidenceSynthesis) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/EvidenceSynthesis?label=%20)](https://ohdsi.github.io/EvidenceSynthesis/) | Martijn Schuemie | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/EvidenceSynthesis?label=%20)](https://github.com/OHDSI/EvidenceSynthesis/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/EvidenceSynthesis?label=%20)](https://github.com/OHDSI/EvidenceSynthesis/pulls) | [![Build Status](https://github.com/OHDSI/EvidenceSynthesis/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/EvidenceSynthesis/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/EvidenceSynthesis/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/EvidenceSynthesis?branch=main) | +| [FeatureExtraction](https://github.com/OHDSI/FeatureExtraction) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/FeatureExtraction?label=%20)](https://ohdsi.github.io/FeatureExtraction/) | Anthony Sena | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/FeatureExtraction?label=%20)](https://github.com/OHDSI/FeatureExtraction/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/FeatureExtraction?label=%20)](https://github.com/OHDSI/FeatureExtraction/pulls) | [![Build Status](https://github.com/OHDSI/FeatureExtraction/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/FeatureExtraction/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/FeatureExtraction/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/FeatureExtraction?branch=main) | +| [Hydra](https://github.com/OHDSI/Hydra) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Hydra?label=%20)](https://ohdsi.github.io/Hydra/) | Martijn Schuemie | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Hydra?label=%20)](https://github.com/OHDSI/Hydra/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Hydra?label=%20)](https://github.com/OHDSI/Hydra/pulls) | [![Build Status](https://github.com/OHDSI/Hydra/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Hydra/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Hydra/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/Hydra?branch=main) | +| [MethodEvaluation](https://github.com/OHDSI/MethodEvaluation) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/MethodEvaluation?label=%20)](https://ohdsi.github.io/MethodEvaluation/) | Martijn Schuemie | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/MethodEvaluation?label=%20)](https://github.com/OHDSI/MethodEvaluation/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/MethodEvaluation?label=%20)](https://github.com/OHDSI/MethodEvaluation/pulls) | [![Build Status](https://github.com/OHDSI/MethodEvaluation/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/MethodEvaluation/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/MethodEvaluation/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/MethodEvaluation?branch=main) | +| [OhdsiSharing](https://github.com/OHDSI/OhdsiSharing) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/OhdsiSharing?label=%20)](https://ohdsi.github.io/OhdsiSharing/) | Lee Evans | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/OhdsiSharing?label=%20)](https://github.com/OHDSI/OhdsiSharing/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/OhdsiSharing?label=%20)](https://github.com/OHDSI/OhdsiSharing/pulls) | [![Build Status](https://github.com/OHDSI/OhdsiSharing/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/OhdsiSharing/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/OhdsiSharing/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/OhdsiSharing?branch=main) | +| [ParallelLogger](https://github.com/OHDSI/ParallelLogger) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/ParallelLogger?label=%20)](https://ohdsi.github.io/ParallelLogger/) | Martijn Schuemie | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/ParallelLogger?label=%20)](https://github.com/OHDSI/ParallelLogger/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/ParallelLogger?label=%20)](https://github.com/OHDSI/ParallelLogger/pulls) | [![Build Status](https://github.com/OHDSI/ParallelLogger/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/ParallelLogger/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/ParallelLogger/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/ParallelLogger?branch=main) | +| [PatientLevelPrediction](https://github.com/OHDSI/PatientLevelPrediction) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/PatientLevelPrediction?label=%20)](https://ohdsi.github.io/PatientLevelPrediction/) | Jenna Reps & Peter Rijnbeek | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/PatientLevelPrediction?label=%20)](https://github.com/OHDSI/PatientLevelPrediction/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/PatientLevelPrediction?label=%20)](https://github.com/OHDSI/PatientLevelPrediction/pulls) | [![Build Status](https://github.com/OHDSI/PatientLevelPrediction/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/PatientLevelPrediction/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/PatientLevelPrediction/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/PatientLevelPrediction?branch=main) | +| [ROhdsiWebApi](https://github.com/OHDSI/ROhdsiWebApi) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/ROhdsiWebApi?label=%20)](https://ohdsi.github.io/ROhdsiWebApi/) | Gowtham Rao | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/ROhdsiWebApi?label=%20)](https://github.com/OHDSI/ROhdsiWebApi/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/ROhdsiWebApi?label=%20)](https://github.com/OHDSI/ROhdsiWebApi/pulls) | [![Build Status](https://github.com/OHDSI/ROhdsiWebApi/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/ROhdsiWebApi/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/ROhdsiWebApi/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/ROhdsiWebApi?branch=main) | +| [SelfControlledCaseSeries](https://github.com/OHDSI/SelfControlledCaseSeries) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/SelfControlledCaseSeries?label=%20)](https://ohdsi.github.io/SelfControlledCaseSeries/) | Martijn Schuemie | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/SelfControlledCaseSeries?label=%20)](https://github.com/OHDSI/SelfControlledCaseSeries/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/SelfControlledCaseSeries?label=%20)](https://github.com/OHDSI/SelfControlledCaseSeries/pulls) | [![Build Status](https://github.com/OHDSI/SelfControlledCaseSeries/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/SelfControlledCaseSeries/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/SelfControlledCaseSeries/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/SelfControlledCaseSeries?branch=main) | +| [SelfControlledCohort](https://github.com/OHDSI/SelfControlledCohort) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/SelfControlledCohort?label=%20)](https://ohdsi.github.io/SelfControlledCohort/) | Jamie Gilbert | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/SelfControlledCohort?label=%20)](https://github.com/OHDSI/SelfControlledCohort/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/SelfControlledCohort?label=%20)](https://github.com/OHDSI/SelfControlledCohort/pulls) | [![Build Status](https://github.com/OHDSI/SelfControlledCohort/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/SelfControlledCohort/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/SelfControlledCohort/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/SelfControlledCohort?branch=main) | +| [SqlRender](https://github.com/OHDSI/SqlRender) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/SqlRender?label=%20)](https://ohdsi.github.io/SqlRender/) | Martijn Schuemie | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/SqlRender?label=%20)](https://github.com/OHDSI/SqlRender/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/SqlRender?label=%20)](https://github.com/OHDSI/SqlRender/pulls) | [![Build Status](https://github.com/OHDSI/SqlRender/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/SqlRender/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/SqlRender/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/SqlRender?branch=main) | diff --git a/Rmd/packages.Rmd b/Rmd/packages.Rmd index 4e5882c..2f6c051 100644 --- a/Rmd/packages.Rmd +++ b/Rmd/packages.Rmd @@ -30,6 +30,7 @@ Below are the packages included in HADES. For each package a link is provided wi

  • Make sure the package passes R check without warnings, both locally and on Github Actions. Fix as many Notes as possible.

  • For those packages that go into CRAN: Check the package using devtools::check_win_devel() and devtools::check_rhub(), and submit to CRAN using devtools::release().

    • -

  • Once all these steps are completed and commited to the develop branch, the package can be released by merging develop into master.

    -

    Pushing changes to the master branch where the version number in the DESCRIPTION file is higher than the current one will trigger the automated release process. If the package passes R check, the following steps are automatically performed:

    +

  • Once all these steps are completed and commited to the develop branch, the package can be released by merging develop into main.

    +

    Pushing changes to the main branch where the version number in the DESCRIPTION file is higher than the current one will trigger the automated release process. If the package passes R check, the following steps are automatically performed:

    @@ -532,13 +532,13 @@

    OHDSI Study packages

    "RemoteHost" : "api.github.com", "RemoteRepo" : "Covid19EstimationHydroxychloroquine", "RemoteUsername" : "ohdsi-studies", - "RemoteRef" : "master" + "RemoteRef" : "main" }

    As discussed later in this document, sometimes we would like to include an OHDSI study package in the lock file as well. These entries are identical in terms of Source, RemoteType, and RemoteHost to those for HADES GitHub packages, but differ in these fields:

    diff --git a/docs/support.html b/docs/support.html index 2b41a95..4c1ed74 100644 --- a/docs/support.html +++ b/docs/support.html @@ -441,6 +441,7 @@

    Bug reports