From 33d03cbb2daa978d0eaed9879415943b186398c1 Mon Sep 17 00:00:00 2001 From: Schuemie Date: Mon, 12 Dec 2022 17:37:15 +0100 Subject: [PATCH] Addign OhdsiShinyModules to HADES --- DESCRIPTION | 10 ++++++---- NEWS.md | 7 +++++++ Rmd/packageStatuses.Rmd | 1 + Rmd/packages.Rmd | 1 + Rmd/support.Rmd | 2 ++ docs/developmentRoadmap.html | 2 ++ docs/packageStatuses.html | 24 +++++++++++++++++------- docs/packages.html | 6 ++++++ docs/support.html | 1 + extras/packages.csv | 1 + 10 files changed, 44 insertions(+), 11 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 5e82a89..49d190a 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: Hades Type: Package Title: Health Analytics Data-to-Evidence Suite -Version: 1.6.0 -Date: 2022-12-05 +Version: 1.7.0 +Date: 2022-12-12 Authors@R: c( person("Martijn", "Schuemie", , "schuemie@ohdsi.org", role = c("aut", "cre")), person("Observational Health Data Science and Informatics", role = c("cph")) @@ -40,7 +40,8 @@ Imports: MethodEvaluation, OhdsiSharing, Hydra, - IterativeHardThresholding + IterativeHardThresholding, + OhdsiShinyModules Remotes: ohdsi/BigKnn, ohdsi/ROhdsiWebApi, @@ -61,7 +62,8 @@ Remotes: ohdsi/Eunomia, ohdsi/CohortGenerator, ohdsi/DeepPatientLevelPrediction, - ohdsi/CohortExplorer + ohdsi/CohortExplorer, + ohdsi/OhdsiShinyModules LazyData: false RoxygenNote: 7.2.0 Encoding: UTF-8 diff --git a/NEWS.md b/NEWS.md index e7d13b9..32243af 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,10 @@ +HADES 1.7.0 +=========== + +Changes + +- Adding OhdsiShinyModules to HADES + HADES 1.6.0 =========== diff --git a/Rmd/packageStatuses.Rmd b/Rmd/packageStatuses.Rmd index 766ce40..e5634c4 100644 --- a/Rmd/packageStatuses.Rmd +++ b/Rmd/packageStatuses.Rmd @@ -38,6 +38,7 @@ The table below lists, for each of the HADES packages, the following details: | [IterativeHardThresholding](https://github.com/OHDSI/IterativeHardThresholding) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/IterativeHardThresholding?label=%20)](https://ohdsi.github.io/IterativeHardThresholding/) | Marc Suchard | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/IterativeHardThresholding?label=%20)](https://github.com/OHDSI/IterativeHardThresholding/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/IterativeHardThresholding?label=%20)](https://github.com/OHDSI/IterativeHardThresholding/pulls) | [![Build Status](https://github.com/OHDSI/IterativeHardThresholding/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/IterativeHardThresholding/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/IterativeHardThresholding/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/IterativeHardThresholding?branch=main) | | [MethodEvaluation](https://github.com/OHDSI/MethodEvaluation) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/MethodEvaluation?label=%20)](https://ohdsi.github.io/MethodEvaluation/) | Martijn Schuemie | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/MethodEvaluation?label=%20)](https://github.com/OHDSI/MethodEvaluation/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/MethodEvaluation?label=%20)](https://github.com/OHDSI/MethodEvaluation/pulls) | [![Build Status](https://github.com/OHDSI/MethodEvaluation/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/MethodEvaluation/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/MethodEvaluation/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/MethodEvaluation?branch=main) | | [OhdsiSharing](https://github.com/OHDSI/OhdsiSharing) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/OhdsiSharing?label=%20)](https://ohdsi.github.io/OhdsiSharing/) | Lee Evans | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/OhdsiSharing?label=%20)](https://github.com/OHDSI/OhdsiSharing/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/OhdsiSharing?label=%20)](https://github.com/OHDSI/OhdsiSharing/pulls) | [![Build Status](https://github.com/OHDSI/OhdsiSharing/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/OhdsiSharing/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/OhdsiSharing/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/OhdsiSharing?branch=main) | +| [OhdsiShinyModules](https://github.com/OHDSI/OhdsiShinyModules) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/OhdsiShinyModules?label=%20)](https://ohdsi.github.io/OhdsiShinyModules/) | Jenna Reps | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/OhdsiShinyModules?label=%20)](https://github.com/OHDSI/OhdsiShinyModules/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/OhdsiShinyModules?label=%20)](https://github.com/OHDSI/OhdsiShinyModules/pulls) | [![Build Status](https://github.com/OHDSI/OhdsiShinyModules/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/OhdsiShinyModules/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/OhdsiShinyModules/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/OhdsiShinyModules?branch=main) | | [ParallelLogger](https://github.com/OHDSI/ParallelLogger) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/ParallelLogger?label=%20)](https://ohdsi.github.io/ParallelLogger/) | Martijn Schuemie | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/ParallelLogger?label=%20)](https://github.com/OHDSI/ParallelLogger/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/ParallelLogger?label=%20)](https://github.com/OHDSI/ParallelLogger/pulls) | [![Build Status](https://github.com/OHDSI/ParallelLogger/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/ParallelLogger/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/ParallelLogger/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/ParallelLogger?branch=main) | | [PatientLevelPrediction](https://github.com/OHDSI/PatientLevelPrediction) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/PatientLevelPrediction?label=%20)](https://ohdsi.github.io/PatientLevelPrediction/) | Jenna Reps & Peter Rijnbeek | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/PatientLevelPrediction?label=%20)](https://github.com/OHDSI/PatientLevelPrediction/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/PatientLevelPrediction?label=%20)](https://github.com/OHDSI/PatientLevelPrediction/pulls) | [![Build Status](https://github.com/OHDSI/PatientLevelPrediction/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/PatientLevelPrediction/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/PatientLevelPrediction/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/PatientLevelPrediction?branch=main) | | [PhenotypeLibrary](https://github.com/OHDSI/PhenotypeLibrary) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/PhenotypeLibrary?label=%20)](https://ohdsi.github.io/PhenotypeLibrary/) | Gowtham Rao | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/PhenotypeLibrary?label=%20)](https://github.com/OHDSI/PhenotypeLibrary/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/PhenotypeLibrary?label=%20)](https://github.com/OHDSI/PhenotypeLibrary/pulls) | [![Build Status](https://github.com/OHDSI/PhenotypeLibrary/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/PhenotypeLibrary/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/PhenotypeLibrary/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/PhenotypeLibrary?branch=main) | diff --git a/Rmd/packages.Rmd b/Rmd/packages.Rmd index 684512d..4a61def 100644 --- a/Rmd/packages.Rmd +++ b/Rmd/packages.Rmd @@ -48,6 +48,7 @@ Below are the packages included in HADES. For each package a link is provided wi

  • Hydra

    Hydrating package skeletons into executable R study packages based on specifications in JSON format.
    Learn more...

  • IterativeHardThresholding

    Performing L0-based regressions using Cyclops
    Learn more...

  • OhdsiSharing

    Securely sharing (large) files between OHDSI collaborators.
    Learn more...
    • +

  • OhdsiShinyModules

    Contains shiny modules that can be used within shiny result interfaces
    Learn more...

  • ParallelLogger

    Support for parallel computation with logging to console, disk, or e-mail.
    Learn more...

  • ROhdsiWebApi

    Interact with OHDSI WebAPI web services.
    Learn more...

  • SqlRender

    Generate SQL on the fly for the various SQL dialects.
    Learn more...
    • diff --git a/Rmd/support.Rmd b/Rmd/support.Rmd index 4aabe07..e17c6c9 100644 --- a/Rmd/support.Rmd +++ b/Rmd/support.Rmd @@ -54,6 +54,8 @@ Bug reports should be files using the issue tracker of the misbehaving package: - [OhdsiSharing issue tracker](https://github.com/OHDSI/OhdsiSharing/issues) +- [OhdsiShinyModules issue tracker](https://github.com/OHDSI/OhdsiShinyModules/issues) + - [ParallelLogger issue tracker](https://github.com/OHDSI/ParallelLogger/issues) - [PatientLevelPrediction issue tracker](https://github.com/OHDSI/PatientLevelPrediction/issues) diff --git a/docs/developmentRoadmap.html b/docs/developmentRoadmap.html index 146f9f6..4807b44 100644 --- a/docs/developmentRoadmap.html +++ b/docs/developmentRoadmap.html @@ -485,6 +485,8 @@

    Package milestones

    +

    +

    diff --git a/docs/packageStatuses.html b/docs/packageStatuses.html index 0049c5b..0d989e2 100644 --- a/docs/packageStatuses.html +++ b/docs/packageStatuses.html @@ -600,6 +600,16 @@

    Package statuses

    codecov.io +OhdsiShinyModules +Version +Jenna Reps +GitHub +Open issues +Open pull-requests +Build Status +codecov.io + + ParallelLogger Version Martijn Schuemie @@ -609,7 +619,7 @@

    Package statuses

    Build Status codecov.io - + PatientLevelPrediction Version Jenna Reps & Peter Rijnbeek @@ -619,7 +629,7 @@

    Package statuses

    Build Status codecov.io - + PhenotypeLibrary Version Gowtham Rao @@ -629,7 +639,7 @@

    Package statuses

    Build Status codecov.io - + PheValuator Version Joel Swerdel @@ -639,7 +649,7 @@

    Package statuses

    Build Status codecov.io - + ROhdsiWebApi Version Gowtham Rao @@ -649,7 +659,7 @@

    Package statuses

    Build Status codecov.io - + SelfControlledCaseSeries Version Martijn Schuemie @@ -659,7 +669,7 @@

    Package statuses

    Build Status codecov.io - + SelfControlledCohort Version Jamie Gilbert @@ -669,7 +679,7 @@

    Package statuses

    Build Status codecov.io - + SqlRender Version Martijn Schuemie diff --git a/docs/packages.html b/docs/packages.html index af86c9e..1dff629 100644 --- a/docs/packages.html +++ b/docs/packages.html @@ -619,6 +619,12 @@

  • + OhdsiShinyModules +

    +Contains shiny modules that can be used within shiny result interfaces
    Learn more… +
    • +
  • +

    ParallelLogger

    Support for parallel computation with logging to console, disk, or e-mail.
    Learn more… diff --git a/docs/support.html b/docs/support.html index 299ac06..210ce95 100644 --- a/docs/support.html +++ b/docs/support.html @@ -469,6 +469,7 @@

    Bug reports

  • IterativeHardThresholding issue tracker

  • MethodEvaluation issue tracker

  • OhdsiSharing issue tracker

    • +

  • OhdsiShinyModules issue tracker

  • ParallelLogger issue tracker

  • PatientLevelPrediction issue tracker

  • PhenotypeLibrary issue tracker

    • diff --git a/extras/packages.csv b/extras/packages.csv index bc924d4..cc6746b 100644 --- a/extras/packages.csv +++ b/extras/packages.csv @@ -24,6 +24,7 @@ order,name,section,description,inCran,pages,maintainers 22,Hydra,Supporting packages,Hydrating package skeletons into executable R study packages based on specifications in JSON format.,FALSE,TRUE,Anthony Sena 23,IterativeHardThresholding,Supporting packages,Performing L0-based regressions using Cyclops,TRUE,TRUE,Marc Suchard 24,OhdsiSharing,Supporting packages,Securely sharing (large) files between OHDSI collaborators.,FALSE,TRUE,Lee Evans +25,OhdsiShinyModules,Supporting packages,Contains shiny modules that can be used within shiny result interfaces,FALSE,TRUE,Jenna Reps 25,ParallelLogger,Supporting packages,"Support for parallel computation with logging to console, disk, or e-mail.",TRUE,TRUE,Martijn Schuemie 26,ROhdsiWebApi,Supporting packages,Interact with OHDSI WebAPI web services.,FALSE,TRUE,Gowtham Rao 27,SqlRender,Supporting packages,Generate SQL on the fly for the various SQL dialects.,TRUE,TRUE,Martijn Schuemie