From 0b8c87a42d4fa9f8521d242a2dde0f9717a1c0cf Mon Sep 17 00:00:00 2001 From: Schuemie Date: Wed, 18 Jan 2023 08:51:13 +0100 Subject: [PATCH] Adding Characterization to HADES --- DESCRIPTION | 8 +++-- NEWS.md | 7 ++++ Rmd/packageStatuses.Rmd | 1 + Rmd/packages.Rmd | 4 +++ Rmd/support.Rmd | 2 ++ docs/developmentRoadmap.html | 2 ++ docs/packageStatuses.html | 62 +++++++++++++++++++++--------------- docs/packages.html | 11 +++++++ docs/rSetup.html | 4 ++- docs/support.html | 1 + extras/packages.csv | 47 ++++++++++++++------------- 11 files changed, 96 insertions(+), 53 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index 83c9403..b8e917e 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,7 +1,7 @@ Package: Hades Type: Package Title: Health Analytics Data-to-Evidence Suite -Version: 1.8.0 +Version: 1.9.0 Date: 2023-01-11 Authors@R: c( person("Martijn", "Schuemie", , "schuemie@ohdsi.org", role = c("aut", "cre")), @@ -42,7 +42,8 @@ Imports: Hydra, IterativeHardThresholding, OhdsiShinyModules, - ResultModelManager + ResultModelManager, + Characterization Remotes: ohdsi/BigKnn, ohdsi/ROhdsiWebApi, @@ -65,7 +66,8 @@ Remotes: ohdsi/DeepPatientLevelPrediction, ohdsi/CohortExplorer, ohdsi/OhdsiShinyModules, - ohdsi/ResultModelManager + ohdsi/ResultModelManager, + ohdsi/Characterization LazyData: false RoxygenNote: 7.2.0 Encoding: UTF-8 diff --git a/NEWS.md b/NEWS.md index 1ae2bbb..bc3bc3d 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,10 @@ +HADES 1.9.0 +=========== + +Changes + +- Adding Characterization to HADES + HADES 1.8.0 =========== diff --git a/Rmd/packageStatuses.Rmd b/Rmd/packageStatuses.Rmd index fce6d7e..9f4e23f 100644 --- a/Rmd/packageStatuses.Rmd +++ b/Rmd/packageStatuses.Rmd @@ -21,6 +21,7 @@ The table below lists, for each of the HADES packages, the following details: | [Andromeda](https://github.com/OHDSI/Andromeda) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Andromeda?label=%20)](https://ohdsi.github.io/Andromeda/) | Adam Black | CRAN | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Andromeda?label=%20)](https://github.com/OHDSI/Andromeda/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Andromeda?label=%20)](https://github.com/OHDSI/Andromeda/pulls) | [![Build Status](https://github.com/OHDSI/Andromeda/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Andromeda/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Andromeda/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/Andromeda?branch=main) | | [BigKnn](https://github.com/OHDSI/BigKnn) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/BigKnn?label=%20)](https://ohdsi.github.io/BigKnn/) | Martijn Schuemie | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/BigKnn?label=%20)](https://github.com/OHDSI/BigKnn/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/BigKnn?label=%20)](https://github.com/OHDSI/BigKnn/pulls) | [![Build Status](https://github.com/OHDSI/BigKnn/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/BigKnn/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/BigKnn/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/BigKnn?branch=main) | | [Capr](https://github.com/OHDSI/Capr) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Capr?label=%20)](https://ohdsi.github.io/Capr/) | Martin Lavallee | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Capr?label=%20)](https://github.com/OHDSI/Capr/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Capr?label=%20)](https://github.com/OHDSI/Capr/pulls) | [![Build Status](https://github.com/OHDSI/Capr/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Capr/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Capr/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/Capr?branch=main) | +| [Characterization](https://github.com/OHDSI/Characterization) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/Characterization?label=%20)](https://ohdsi.github.io/Characterization/) | Jenna Reps | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/Characterization?label=%20)](https://github.com/OHDSI/Characterization/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/Characterization?label=%20)](https://github.com/OHDSI/Characterization/pulls) | [![Build Status](https://github.com/OHDSI/Characterization/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/Characterization/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/Characterization/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/Characterization?branch=main) | | [CirceR](https://github.com/OHDSI/CirceR) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/CirceR?label=%20)](https://ohdsi.github.io/CirceR/) | Chris Knoll | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/CirceR?label=%20)](https://github.com/OHDSI/CirceR/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/CirceR?label=%20)](https://github.com/OHDSI/CirceR/pulls) | [![Build Status](https://github.com/OHDSI/CirceR/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/CirceR/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/CirceR/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/CirceR?branch=main) | | [CohortDiagnostics](https://github.com/OHDSI/CohortDiagnostics) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/CohortDiagnostics?label=%20)](https://ohdsi.github.io/CohortDiagnostics/) | Jamie Gilbert | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/CohortDiagnostics?label=%20)](https://github.com/OHDSI/CohortDiagnostics/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/CohortDiagnostics?label=%20)](https://github.com/OHDSI/CohortDiagnostics/pulls) | [![Build Status](https://github.com/OHDSI/CohortDiagnostics/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/CohortDiagnostics/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/CohortDiagnostics/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/CohortDiagnostics?branch=main) | | [CohortExplorer](https://github.com/OHDSI/CohortExplorer) | [![Version](https://img.shields.io/github/r-package/v/ohdsi/CohortExplorer?label=%20)](https://ohdsi.github.io/CohortExplorer/) | Gowtham Rao | GitHub | [![Open issues](https://img.shields.io/github/issues-raw/OHDSI/CohortExplorer?label=%20)](https://github.com/OHDSI/CohortExplorer/issues) | [![Open pull-requests](https://img.shields.io/github/issues-pr-raw/OHDSI/CohortExplorer?label=%20)](https://github.com/OHDSI/CohortExplorer/pulls) | [![Build Status](https://github.com/OHDSI/CohortExplorer/workflows/R-CMD-check/badge.svg)](https://github.com/OHDSI/CohortExplorer/actions?query=workflow%3AR-CMD-check) | [![codecov.io](https://codecov.io/github/OHDSI/CohortExplorer/coverage.svg?branch=main)](https://codecov.io/github/OHDSI/CohortExplorer?branch=main) | diff --git a/Rmd/packages.Rmd b/Rmd/packages.Rmd index 2ed18f8..b6b36d6 100644 --- a/Rmd/packages.Rmd +++ b/Rmd/packages.Rmd @@ -22,6 +22,10 @@ Below are the packages included in HADES. For each package a link is provided wi

  • DeepPatientLevelPrediction

    Performing patient level prediction using deep learning
    Learn more...

  • EnsemblePatientLevelPrediction

    Building and validating ensemble patient-level predictive models.
    Learn more...
    • +

    Characterization

    +

    Cohort construction and evaluation

    +Characterization +

    + +

    Cohort construction and evaluation