From 5a7a8bca57a3d2ead74cb516ef545db4aaefe7a1 Mon Sep 17 00:00:00 2001 From: Anthony Sena Date: Mon, 30 Sep 2024 10:55:22 -0400 Subject: [PATCH] Release v0.11.2 prep (#194) * Bump version and NEWS * Code formatting * Update documentation * Regenerate vignettes * Regenerate site documentation --- DESCRIPTION | 4 +- NEWS.md | 5 +++ docs/404.html | 2 +- .../CreatingCohortSubsetDefinitions.html | 42 +++++++++--------- docs/articles/GeneratingCohorts.html | 8 ++-- docs/articles/SamplingCohorts.html | 4 +- docs/articles/index.html | 2 +- docs/authors.html | 7 ++- .../fonts/1Ptug8zYS_SKggPNyC0ITw.woff2 | Bin 48336 -> 48208 bytes .../fonts/1Ptug8zYS_SKggPNyCAIT5lu.woff2 | Bin 26988 -> 26788 bytes .../fonts/1Ptug8zYS_SKggPNyCIIT5lu.woff2 | Bin 11384 -> 11176 bytes .../fonts/1Ptug8zYS_SKggPNyCMIT5lu.woff2 | Bin 30860 -> 30744 bytes .../fonts/1Ptug8zYS_SKggPNyCkIT5lu.woff2 | Bin 25796 -> 25828 bytes docs/index.html | 2 +- docs/news/index.html | 6 ++- docs/pkgdown.yml | 4 +- docs/reference/CohortGenerator-package.html | 8 ++-- docs/reference/CohortSubsetDefinition.html | 2 +- docs/reference/CohortSubsetOperator.html | 2 +- docs/reference/DemographicSubsetOperator.html | 2 +- docs/reference/LimitSubsetOperator.html | 2 +- docs/reference/SubsetCohortWindow.html | 2 +- docs/reference/SubsetOperator.html | 2 +- docs/reference/addCohortSubsetDefinition.html | 2 +- ...eckAndFixCohortDefinitionSetDataTypes.html | 2 +- docs/reference/computeChecksum.html | 2 +- docs/reference/createCohortSubset.html | 2 +- .../createCohortSubsetDefinition.html | 2 +- docs/reference/createCohortTables.html | 2 +- docs/reference/createDemographicSubset.html | 2 +- .../createEmptyCohortDefinitionSet.html | 2 +- ...eEmptyNegativeControlOutcomeCohortSet.html | 2 +- docs/reference/createLimitSubset.html | 2 +- docs/reference/createResultsDataModel.html | 2 +- docs/reference/createSubsetCohortWindow.html | 2 +- docs/reference/dropCohortStatsTables.html | 2 +- docs/reference/exportCohortStatsTables.html | 2 +- docs/reference/generateCohortSet.html | 2 +- ...generateNegativeControlOutcomeCohorts.html | 2 +- docs/reference/getCohortCounts.html | 2 +- docs/reference/getCohortDefinitionSet.html | 2 +- docs/reference/getCohortInclusionRules.html | 2 +- docs/reference/getCohortStats.html | 2 +- docs/reference/getCohortTableNames.html | 2 +- docs/reference/getDataMigrator.html | 2 +- docs/reference/getRequiredTasks.html | 2 +- .../getResultsDataModelSpecifications.html | 2 +- docs/reference/getSubsetDefinitions.html | 2 +- docs/reference/index.html | 2 +- docs/reference/insertInclusionRuleNames.html | 2 +- docs/reference/isCamelCase.html | 2 +- docs/reference/isCohortDefinitionSet.html | 2 +- .../isFormattedForDatabaseUpload.html | 2 +- docs/reference/isSnakeCase.html | 2 +- docs/reference/isTaskRequired.html | 2 +- docs/reference/migrateDataModel.html | 2 +- docs/reference/readCsv.html | 2 +- docs/reference/recordTasksDone.html | 2 +- docs/reference/runCohortGeneration.html | 2 +- docs/reference/sampleCohortDefinitionSet.html | 2 +- docs/reference/saveCohortDefinitionSet.html | 2 +- .../reference/saveCohortSubsetDefinition.html | 2 +- docs/reference/saveIncremental.html | 2 +- docs/reference/uploadResults.html | 2 +- docs/reference/writeCsv.html | 2 +- docs/search.json | 2 +- extras/CohortGenerator.pdf | Bin 277150 -> 277150 bytes inst/doc/CreatingCohortSubsetDefinitions.pdf | Bin 268876 -> 269056 bytes inst/doc/GeneratingCohorts.pdf | Bin 254125 -> 254305 bytes inst/doc/SamplingCohorts.pdf | Bin 218824 -> 219047 bytes man/CohortGenerator-package.Rd | 4 +- vignettes/CreatingCohortSubsetDefinitions.Rmd | 2 +- vignettes/GeneratingCohorts.Rmd | 2 +- vignettes/SamplingCohorts.Rmd | 2 +- 74 files changed, 105 insertions(+), 97 deletions(-) diff --git a/DESCRIPTION b/DESCRIPTION index bff17ec..fbd83a7 100644 --- a/DESCRIPTION +++ b/DESCRIPTION @@ -1,8 +1,8 @@ Package: CohortGenerator Type: Package Title: Cohort Generation for the OMOP Common Data Model -Version: 0.11.1 -Date: 2024-09-12 +Version: 0.11.2 +Date: 2024-09-30 Authors@R: c( person("Anthony", "Sena", email = "sena@ohdsi.org", role = c("aut", "cre")), person("Jamie", "Gilbert", role = c("aut")), diff --git a/NEWS.md b/NEWS.md index 40cb54e..9271fa2 100644 --- a/NEWS.md +++ b/NEWS.md @@ -1,3 +1,8 @@ +CohortGenerator 0.11.2 +======================= + +- Ensure temp tables are dropped before creating them (#188) + CohortGenerator 0.11.1 ======================= diff --git a/docs/404.html b/docs/404.html index 9893fb2..88ce9be 100644 --- a/docs/404.html +++ b/docs/404.html @@ -20,7 +20,7 @@ CohortGenerator - 0.11.1 + 0.11.2